Wall clock time and date at job start Tue Mar 31 2020 04:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47164 * 240.57820 * 3 2 1 5 5 C 1.36968 * 120.00482 * 274.37027 * 4 3 2 6 6 H 1.07999 * 120.00317 * 124.68449 * 5 4 3 7 7 C 1.38975 * 119.99763 * 304.68987 * 5 4 3 8 8 N 1.31416 * 120.00001 * 183.20289 * 7 5 4 9 9 Si 1.86800 * 120.00004 * 3.19840 * 7 5 4 10 10 H 1.48506 * 109.46750 * 94.48391 * 9 7 5 11 11 H 1.48500 * 109.47023 * 214.48431 * 9 7 5 12 12 H 1.48501 * 109.47038 * 334.48660 * 9 7 5 13 13 C 1.34780 * 119.99933 * 94.36822 * 4 3 2 14 14 O 1.21672 * 119.99432 * 1.88231 * 13 4 3 15 15 C 1.47103 * 120.00299 * 181.88357 * 13 4 3 16 16 C 1.36096 * 123.47525 * 171.21227 * 15 13 4 17 17 S 1.70444 * 110.81168 * 180.29209 * 16 15 13 18 18 C 1.75505 * 92.44897 * 359.71970 * 17 16 15 19 19 S 1.76202 * 124.70101 * 179.97438 * 18 17 16 20 20 C 1.81397 * 104.45269 * 270.02684 * 19 18 17 21 21 O 1.42104 * 104.27847 * 26.10084 * 19 18 17 22 22 O 1.42101 * 104.27683 * 153.95299 * 19 18 17 23 23 C 1.32763 * 110.59524 * 0.02562 * 18 17 16 24 24 H 4.40638 * 5.51391 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46679 * 120.58409 * 3 2 1 26 26 H 1.08998 * 109.47072 * 0.58131 * 3 2 1 27 27 H 0.96997 * 120.00358 * 180.02562 * 8 7 5 28 28 H 1.08004 * 124.59063 * 359.97438 * 16 15 13 29 29 H 1.09004 * 109.47203 * 60.00237 * 20 19 18 30 30 H 1.08995 * 109.47461 * 179.97438 * 20 19 18 31 31 H 1.09004 * 109.47213 * 300.00240 * 20 19 18 32 32 H 1.08000 * 123.45226 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.6794 1.2031 5 6 3.2766 2.0416 1.2108 6 1 2.7825 2.6320 1.9683 7 6 4.0569 2.6641 0.2438 8 7 4.2450 3.9640 0.2881 9 14 4.8384 1.6531 -1.1187 10 1 3.9564 1.6670 -2.3134 11 1 6.1587 2.2343 -1.4713 12 1 5.0213 0.2544 -0.6546 13 6 3.4429 -0.0367 2.3024 14 8 3.3489 -1.2497 2.2844 15 6 3.8934 0.6482 3.5238 16 6 4.0573 0.0198 4.7198 17 16 4.5806 1.1175 5.9140 18 6 4.5905 2.4596 4.7831 19 16 5.0404 4.1132 5.1926 20 6 3.4842 4.8922 5.7044 21 8 5.9167 3.9734 6.3025 22 8 5.4952 4.6668 3.9654 23 6 4.2110 2.0563 3.5764 24 1 -1.0500 0.0001 -0.0002 25 1 3.0091 0.5237 -0.8847 26 1 3.0098 -1.0268 -0.0104 27 1 4.7893 4.3986 -0.3870 28 1 3.8751 -1.0311 4.8903 29 1 3.0750 4.3577 6.5618 30 1 3.6707 5.9303 5.9793 31 1 2.7717 4.8566 4.8802 32 1 4.1427 2.7144 2.7229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281041062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:19 Heat of formation + Delta-G solvation = -7.553501 kcal Electronic energy + Delta-G solvation = -21649.487032 eV Core-core repulsion = 18217.560264 eV Total energy + Delta-G solvation = -3431.926769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.027 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14664 -38.16891 -37.77275 -37.23476 -36.91509 -34.55033 -33.45830 -31.16391 -30.18456 -29.13358 -27.08770 -25.30661 -22.83922 -20.68915 -20.40624 -19.82790 -19.22333 -18.38098 -17.68196 -17.45694 -17.11257 -16.57180 -16.26314 -16.19260 -15.91393 -15.16076 -14.90088 -14.68410 -14.13070 -14.04378 -13.90619 -13.75563 -13.67713 -13.58875 -13.10648 -13.06447 -12.94622 -12.57825 -12.41533 -12.11498 -12.04284 -11.83844 -11.54822 -11.04633 -10.98297 -10.69691 -10.38931 -9.76405 -9.33523 -8.49490 -6.38169 -0.83084 -0.46370 0.47160 0.72783 0.81424 1.18382 1.30872 1.35288 1.66824 1.90589 1.93240 2.14609 2.36243 2.80984 2.86926 3.01099 3.39070 3.56517 3.97954 4.03326 4.13402 4.21037 4.28996 4.42468 4.50570 4.90047 4.91529 4.97166 5.04685 5.41474 5.48002 5.97040 6.05496 6.68293 6.85533 7.19058 7.58435 8.56254 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.006190 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.367534 B = 4522.384737 C = 5472.187060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.233 4.233 3 C 0.200 3.800 4 N -0.466 5.466 5 C -0.356 4.356 6 H 0.097 0.903 7 C 0.040 3.960 8 N -0.873 5.873 9 Si 0.914 3.086 10 H -0.253 1.253 11 H -0.284 1.284 12 H -0.261 1.261 13 C 0.548 3.452 14 O -0.610 6.610 15 C -0.188 4.188 16 C -0.161 4.161 17 S 0.323 5.677 18 C -0.818 4.818 19 S 2.519 3.481 20 C -0.621 4.621 21 O -0.965 6.965 22 O -0.966 6.966 23 C 0.020 3.980 24 H 0.259 0.741 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.284 0.716 28 H 0.190 0.810 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 0.245 9.980 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.234 4.234 3 C 0.079 3.921 4 N -0.186 5.186 5 C -0.483 4.483 6 H 0.115 0.885 7 C -0.168 4.168 8 N -0.507 5.507 9 Si 0.739 3.261 10 H -0.178 1.178 11 H -0.210 1.210 12 H -0.185 1.185 13 C 0.339 3.661 14 O -0.497 6.497 15 C -0.206 4.206 16 C -0.301 4.301 17 S 0.590 5.410 18 C -1.016 5.016 19 S 2.698 3.302 20 C -0.776 4.776 21 O -0.962 6.962 22 O -0.964 6.964 23 C -0.011 4.011 24 H 0.275 0.725 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.207 0.793 29 H 0.181 0.819 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.861 0.023 11.348 11.704 hybrid contribution -0.716 -0.685 -2.782 2.953 sum -3.577 -0.662 8.567 9.307 Atomic orbital electron populations 1.25716 0.96458 0.99555 0.97981 1.23806 0.95366 1.01624 1.02611 1.18646 0.85233 0.98640 0.89584 1.43514 1.57369 1.06957 1.10806 1.18904 1.31445 0.79967 1.17981 0.88533 1.25962 0.95092 0.96182 0.99537 1.69671 1.36599 1.09386 1.35065 0.86279 0.78885 0.80102 0.80817 1.17816 1.21020 1.18516 1.18173 0.77900 0.85684 0.84380 1.90620 1.59309 1.14492 1.85279 1.20350 1.11206 0.94461 0.94591 1.26246 0.99645 1.06588 0.97631 1.82149 1.59722 0.92547 1.06622 1.35665 1.30198 1.28734 1.07031 1.04694 0.78659 0.73137 0.73714 1.30020 1.18362 1.14749 1.14477 1.93520 1.63008 1.85748 1.53928 1.93626 1.80298 1.76994 1.45472 1.22994 0.85179 0.95412 0.97494 0.72466 0.90298 0.88785 0.90591 0.79254 0.81927 0.82005 0.83888 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.94 19.25 74.32 1.43 -4.51 16 2 C -0.23 -9.54 13.65 31.13 0.42 -9.12 16 3 C 0.20 8.91 4.41 84.58 0.37 9.29 16 4 N -0.47 -22.53 2.00 -649.46 -1.30 -23.83 16 5 C -0.36 -17.88 6.45 84.07 0.54 -17.34 16 6 H 0.10 5.01 6.28 -2.91 -0.02 4.99 16 7 C 0.04 2.07 5.30 84.93 0.45 2.52 16 8 N -0.87 -46.65 13.96 21.67 0.30 -46.35 16 9 Si 0.91 40.90 24.84 68.60 1.70 42.61 16 10 H -0.25 -10.57 7.10 99.48 0.71 -9.86 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.26 -11.72 6.45 99.48 0.64 -11.07 16 13 C 0.55 26.26 7.61 86.57 0.66 26.92 16 14 O -0.61 -30.67 16.26 -4.26 -0.07 -30.74 16 15 C -0.19 -7.87 5.91 -19.87 -0.12 -7.99 16 16 C -0.16 -5.34 10.53 67.32 0.71 -4.63 16 17 S 0.32 8.72 22.78 -56.49 -1.29 7.44 16 18 C -0.82 -27.39 6.16 66.64 0.41 -26.98 16 19 S 2.52 74.09 5.93 -56.49 -0.33 73.76 16 20 C -0.62 -10.44 10.80 113.37 1.22 -9.21 16 21 O -0.96 -30.51 17.74 -127.65 -2.26 -32.78 16 22 O -0.97 -39.04 17.61 -127.65 -2.25 -41.29 16 23 C 0.02 0.83 8.17 22.67 0.19 1.02 16 24 H 0.26 5.56 7.80 -4.42 -0.03 5.52 16 25 H 0.08 3.44 3.64 -2.39 -0.01 3.44 16 26 H 0.09 4.12 7.27 -2.39 -0.02 4.10 16 27 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.19 5.58 8.04 -2.91 -0.02 5.56 16 29 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.20 9.42 4.15 -2.91 -0.01 9.41 16 Total: -1.00 -73.49 309.92 1.91 -71.59 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.11 Total: 19.64 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 6.29 Total: -40.04 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.00 Total: -70.17 kcal Atomic # 8 Polarization: -100.23 SS G_CDS: -4.58 Total: -104.81 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.70 Total: 42.61 kcal Atomic # 16 Polarization: 82.81 SS G_CDS: -1.62 Total: 81.19 kcal Total: -73.49 1.91 -71.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281041062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.032 kcal (2) G-P(sol) polarization free energy of solvation -73.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds