Wall clock time and date at job start Tue Mar 31 2020 04:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46753 * 200.87918 * 3 2 1 5 5 C 1.36938 * 119.99968 * 273.17514 * 4 3 2 6 6 H 1.08006 * 120.00317 * 186.98515 * 5 4 3 7 7 C 1.38813 * 119.99714 * 6.97741 * 5 4 3 8 8 N 1.31613 * 120.00284 * 25.11909 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 205.11076 * 7 5 4 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47298 * 120.00441 * 9 7 5 12 12 H 1.48499 * 109.47288 * 240.00493 * 9 7 5 13 13 S 1.65603 * 120.00385 * 93.17581 * 4 3 2 14 14 O 1.42096 * 106.40289 * 156.45543 * 13 4 3 15 15 O 1.42105 * 106.39610 * 23.53805 * 13 4 3 16 16 C 1.76191 * 107.21793 * 269.99921 * 13 4 3 17 17 C 1.40316 * 126.43841 * 115.02358 * 16 13 4 18 18 C 1.36644 * 106.70138 * 179.97438 * 17 16 13 19 19 C 1.46471 * 125.99169 * 179.97438 * 18 17 16 20 20 O 1.21620 * 120.00009 * 0.27632 * 19 18 17 21 21 O 1.34899 * 119.99708 * 180.02562 * 19 18 17 22 22 O 1.34933 * 108.00737 * 0.22649 * 18 17 16 23 23 C 1.33910 * 109.38287 * 359.62079 * 22 18 17 24 24 C 1.50704 * 125.60941 * 180.14864 * 23 22 18 25 25 H 4.40637 * 5.51402 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.46976 * 80.87488 * 3 2 1 27 27 H 1.09003 * 109.47255 * 320.87748 * 3 2 1 28 28 H 0.96999 * 120.00509 * 179.97438 * 8 7 5 29 29 H 1.08000 * 126.64657 * 359.97438 * 17 16 13 30 30 H 0.96695 * 116.99604 * 180.02562 * 21 19 18 31 31 H 1.08999 * 109.47227 * 270.27090 * 24 23 22 32 32 H 1.09002 * 109.46870 * 30.26865 * 24 23 22 33 33 H 1.08990 * 109.46951 * 150.27063 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2914 0.4923 5 6 3.2995 2.3371 -0.3762 6 1 3.7639 3.2516 -0.0380 7 6 2.8707 2.2216 -1.6914 8 7 1.9055 1.3808 -1.9975 9 14 3.6636 3.2596 -3.0268 10 1 4.7165 4.1180 -2.4270 11 1 4.2728 2.3707 -4.0485 12 1 2.6321 4.1151 -3.6667 13 16 3.4845 1.4860 2.0990 14 8 4.4097 2.5614 2.1803 15 8 3.7545 0.1880 2.6106 16 6 2.0105 2.0366 2.8917 17 6 1.2748 1.3382 3.8612 18 6 0.2148 2.1324 4.1973 19 6 -0.8260 1.8100 5.1760 20 8 -0.7892 0.7533 5.7772 21 8 -1.8227 2.6872 5.4144 22 8 0.2922 3.2632 3.4651 23 6 1.3761 3.2114 2.6806 24 6 1.8137 4.2839 1.7166 25 1 -1.0502 -0.0005 0.0000 26 1 3.0094 -0.1622 -1.0147 27 1 3.0098 -0.7965 0.6484 28 1 1.6057 1.3004 -2.9165 29 1 1.5024 0.3623 4.2638 30 1 -2.4863 2.4304 6.0691 31 1 1.3570 4.1058 0.7430 32 1 1.5014 5.2587 2.0914 33 1 2.8989 4.2631 1.6181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281048572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:14 Heat of formation + Delta-G solvation = -73.752368 kcal Electronic energy + Delta-G solvation = -24577.412996 eV Core-core repulsion = 20699.862758 eV Total energy + Delta-G solvation = -3877.550238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46424 -39.88104 -36.43258 -36.20281 -35.99737 -34.56638 -33.07586 -32.11906 -31.86601 -31.19926 -27.56782 -26.64534 -24.00707 -23.39486 -21.81818 -20.61367 -18.92409 -18.47148 -17.86517 -17.59331 -16.80557 -16.53362 -16.36827 -15.27622 -15.18992 -14.93189 -14.69666 -14.46607 -13.69167 -13.48895 -13.34372 -12.94747 -12.81838 -12.61926 -12.48692 -11.94392 -11.84268 -11.69556 -11.30951 -11.09825 -10.97335 -10.88612 -10.81478 -10.57211 -10.40999 -10.29591 -9.99354 -9.78083 -9.29430 -8.91943 -8.46746 -8.39174 -6.69863 -4.10061 1.00610 1.54614 2.18751 2.50596 2.97281 2.99135 3.09472 3.16010 3.33568 3.71374 3.91756 4.12365 4.48576 4.56696 4.84516 4.92710 5.05836 5.35686 5.50083 5.55458 5.70904 5.88136 5.93588 5.99576 6.23219 6.28123 6.39656 6.52277 6.66860 6.91547 6.98825 7.05816 7.16283 7.79537 8.03870 8.46613 8.84400 8.88560 10.21190 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.005458 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.218925 B = 5128.789201 C = 5199.715373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.111 4.111 3 C 0.236 3.764 4 N -0.794 5.794 5 C -0.253 4.253 6 H 0.125 0.875 7 C 0.031 3.969 8 N -0.815 5.815 9 Si 0.926 3.074 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.279 1.279 13 S 2.555 3.445 14 O -0.980 6.980 15 O -0.993 6.993 16 C -0.761 4.761 17 C -0.013 4.013 18 C -0.107 4.107 19 C 0.578 3.422 20 O -0.501 6.501 21 O -0.507 6.507 22 O -0.156 6.156 23 C 0.162 3.838 24 C -0.107 4.107 25 H 0.195 0.805 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.277 0.723 29 H 0.168 0.832 30 H 0.414 0.586 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 3.214 2.944 6.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.113 4.113 3 C 0.111 3.889 4 N -0.617 5.617 5 C -0.400 4.400 6 H 0.142 0.858 7 C -0.182 4.182 8 N -0.453 5.453 9 Si 0.751 3.249 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.205 1.205 13 S 2.650 3.350 14 O -0.970 6.970 15 O -0.983 6.983 16 C -0.838 4.838 17 C -0.033 4.033 18 C -0.156 4.156 19 C 0.423 3.577 20 O -0.392 6.392 21 O -0.319 6.319 22 O -0.051 6.051 23 C 0.106 3.894 24 C -0.163 4.163 25 H 0.212 0.788 26 H 0.135 0.865 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.186 0.814 30 H 0.273 0.727 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.437 3.016 3.472 5.742 hybrid contribution -1.562 0.383 -0.097 1.612 sum -4.999 3.400 3.375 6.924 Atomic orbital electron populations 1.24195 0.95309 1.03269 1.05821 1.23365 0.94547 0.97474 0.95942 1.18482 0.83857 0.84698 1.01908 1.55273 1.71926 1.14981 1.19540 1.20159 1.31460 0.99020 0.89351 0.85764 1.25593 0.95066 0.98032 0.99491 1.70240 1.20945 1.33554 1.20592 0.85851 0.79529 0.79528 0.79998 1.18331 1.20009 1.20483 1.10949 0.77385 0.73054 0.73617 1.93353 1.61667 1.55502 1.86469 1.93348 1.85549 1.39425 1.79978 1.33522 1.30257 1.03889 1.16098 1.21593 0.90055 0.98975 0.92664 1.20480 1.01343 0.90101 1.03636 1.18806 0.79027 0.80861 0.79003 1.90984 1.75384 1.24579 1.48221 1.84687 1.37250 1.48824 1.61122 1.84010 1.40832 1.37144 1.43153 1.22763 0.82381 0.95350 0.88946 1.21078 1.05036 0.93888 0.96302 0.78817 0.86512 0.89972 0.91206 0.81429 0.72712 0.87045 0.89943 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.48 19.25 29.55 0.57 -4.91 16 2 C -0.11 -2.40 11.24 -37.12 -0.42 -2.82 16 3 C 0.24 5.02 5.45 -6.83 -0.04 4.98 16 4 N -0.79 -17.43 2.88 -62.77 -0.18 -17.61 16 5 C -0.25 -5.45 8.42 -15.06 -0.13 -5.58 16 6 H 0.12 2.58 6.22 -52.48 -0.33 2.26 16 7 C 0.03 0.66 4.92 -17.43 -0.09 0.57 16 8 N -0.82 -17.84 8.97 55.49 0.50 -17.35 16 9 Si 0.93 16.68 29.62 -169.99 -5.04 11.65 16 10 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 11 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 12 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 13 S 2.55 57.05 5.46 -107.50 -0.59 56.47 16 14 O -0.98 -23.05 15.33 -57.17 -0.88 -23.92 16 15 O -0.99 -23.82 16.36 -57.17 -0.94 -24.75 16 16 C -0.76 -15.87 6.18 -39.89 -0.25 -16.12 16 17 C -0.01 -0.25 10.32 -39.38 -0.41 -0.66 16 18 C -0.11 -2.00 7.18 -36.84 -0.26 -2.26 16 19 C 0.58 9.43 8.30 34.05 0.28 9.71 16 20 O -0.50 -8.94 17.65 -19.36 -0.34 -9.29 16 21 O -0.51 -6.36 13.44 -42.48 -0.57 -6.93 16 22 O -0.16 -2.94 10.67 4.76 0.05 -2.89 16 23 C 0.16 3.09 7.31 -35.40 -0.26 2.83 16 24 C -0.11 -1.73 9.32 36.01 0.34 -1.39 16 25 H 0.19 3.36 7.80 -54.08 -0.42 2.94 16 26 H 0.12 2.47 6.43 -51.93 -0.33 2.14 16 27 H 0.08 1.66 6.95 -51.93 -0.36 1.30 16 28 H 0.28 5.77 8.31 -40.82 -0.34 5.43 16 29 H 0.17 3.19 8.06 -52.49 -0.42 2.77 16 30 H 0.41 2.76 9.11 45.56 0.42 3.17 16 31 H 0.11 1.78 8.00 -51.93 -0.42 1.37 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.12 2.02 5.45 -51.93 -0.28 1.73 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -29.70 314.08 -5.61 -35.31 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -1.71 Total: 10.22 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.66 Total: -15.64 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.32 Total: -34.96 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: -2.67 Total: -67.78 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.04 Total: 11.65 kcal Atomic # 16 Polarization: 57.05 SS G_CDS: -0.59 Total: 56.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.70 -5.61 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281048572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.440 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds