Wall clock time and date at job start Tue Mar 31 2020 04:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46753 * 200.87918 * 3 2 1 5 5 C 1.36938 * 119.99968 * 273.17514 * 4 3 2 6 6 H 1.08006 * 120.00317 * 186.98515 * 5 4 3 7 7 C 1.38813 * 119.99714 * 6.97741 * 5 4 3 8 8 N 1.31613 * 120.00284 * 25.11909 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 205.11076 * 7 5 4 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47298 * 120.00441 * 9 7 5 12 12 H 1.48499 * 109.47288 * 240.00493 * 9 7 5 13 13 S 1.65603 * 120.00385 * 93.17581 * 4 3 2 14 14 O 1.42096 * 106.40289 * 156.45543 * 13 4 3 15 15 O 1.42105 * 106.39610 * 23.53805 * 13 4 3 16 16 C 1.76191 * 107.21793 * 269.99921 * 13 4 3 17 17 C 1.40316 * 126.43841 * 115.02358 * 16 13 4 18 18 C 1.36644 * 106.70138 * 179.97438 * 17 16 13 19 19 C 1.46471 * 125.99169 * 179.97438 * 18 17 16 20 20 O 1.21620 * 120.00009 * 0.27632 * 19 18 17 21 21 O 1.34899 * 119.99708 * 180.02562 * 19 18 17 22 22 O 1.34933 * 108.00737 * 0.22649 * 18 17 16 23 23 C 1.33910 * 109.38287 * 359.62079 * 22 18 17 24 24 C 1.50704 * 125.60941 * 180.14864 * 23 22 18 25 25 H 4.40637 * 5.51402 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.46976 * 80.87488 * 3 2 1 27 27 H 1.09003 * 109.47255 * 320.87748 * 3 2 1 28 28 H 0.96999 * 120.00509 * 179.97438 * 8 7 5 29 29 H 1.08000 * 126.64657 * 359.97438 * 17 16 13 30 30 H 0.96695 * 116.99604 * 180.02562 * 21 19 18 31 31 H 1.08999 * 109.47227 * 270.27090 * 24 23 22 32 32 H 1.09002 * 109.46870 * 30.26865 * 24 23 22 33 33 H 1.08990 * 109.46951 * 150.27063 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2914 0.4923 5 6 3.2995 2.3371 -0.3762 6 1 3.7639 3.2516 -0.0380 7 6 2.8707 2.2216 -1.6914 8 7 1.9055 1.3808 -1.9975 9 14 3.6636 3.2596 -3.0268 10 1 4.7165 4.1180 -2.4270 11 1 4.2728 2.3707 -4.0485 12 1 2.6321 4.1151 -3.6667 13 16 3.4845 1.4860 2.0990 14 8 4.4097 2.5614 2.1803 15 8 3.7545 0.1880 2.6106 16 6 2.0105 2.0366 2.8917 17 6 1.2748 1.3382 3.8612 18 6 0.2148 2.1324 4.1973 19 6 -0.8260 1.8100 5.1760 20 8 -0.7892 0.7533 5.7772 21 8 -1.8227 2.6872 5.4144 22 8 0.2922 3.2632 3.4651 23 6 1.3761 3.2114 2.6806 24 6 1.8137 4.2839 1.7166 25 1 -1.0502 -0.0005 0.0000 26 1 3.0094 -0.1622 -1.0147 27 1 3.0098 -0.7965 0.6484 28 1 1.6057 1.3004 -2.9165 29 1 1.5024 0.3623 4.2638 30 1 -2.4863 2.4304 6.0691 31 1 1.3570 4.1058 0.7430 32 1 1.5014 5.2587 2.0914 33 1 2.8989 4.2631 1.6181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281048572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:13 Heat of formation + Delta-G solvation = -94.353182 kcal Electronic energy + Delta-G solvation = -24578.306314 eV Core-core repulsion = 20699.862758 eV Total energy + Delta-G solvation = -3878.443556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.92080 -41.12593 -38.10596 -37.75180 -37.37135 -36.32442 -34.54687 -33.79425 -33.28062 -32.85115 -28.93223 -28.30016 -25.66412 -24.76801 -23.29194 -22.04804 -20.38961 -20.01349 -19.47375 -18.85028 -18.47397 -18.14632 -17.84395 -16.75421 -16.51799 -16.48247 -16.28573 -16.05484 -15.26437 -14.99182 -14.77466 -14.43505 -14.24013 -14.13462 -13.89794 -13.52813 -13.27019 -12.90814 -12.85203 -12.67977 -12.60534 -12.48877 -12.28995 -12.21086 -12.02936 -11.86534 -11.53603 -11.39078 -10.95421 -10.57752 -10.10351 -9.88773 -8.35838 -5.78908 -0.39683 -0.12198 0.68254 1.16840 1.56307 1.59353 1.64499 1.76066 2.03817 2.10787 2.36406 2.47248 2.83829 2.91014 3.25225 3.47423 3.59147 3.90551 3.97367 4.11430 4.38453 4.48371 4.52458 4.57196 4.64071 4.96755 4.98613 5.12819 5.20955 5.27904 5.42243 5.49045 5.58364 6.36056 6.72781 6.77425 7.17869 7.21643 8.54783 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.005458 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.218925 B = 5128.789201 C = 5199.715373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.141 4.141 3 C 0.234 3.766 4 N -0.792 5.792 5 C -0.254 4.254 6 H 0.131 0.869 7 C 0.005 3.995 8 N -0.826 5.826 9 Si 0.988 3.012 10 H -0.256 1.256 11 H -0.276 1.276 12 H -0.275 1.275 13 S 2.540 3.460 14 O -1.001 7.001 15 O -1.021 7.021 16 C -0.783 4.783 17 C -0.036 4.036 18 C -0.107 4.107 19 C 0.589 3.411 20 O -0.519 6.519 21 O -0.494 6.494 22 O -0.152 6.152 23 C 0.160 3.840 24 C -0.107 4.107 25 H 0.223 0.777 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.282 0.718 29 H 0.166 0.834 30 H 0.442 0.558 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 4.680 1.977 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.144 4.144 3 C 0.109 3.891 4 N -0.614 5.614 5 C -0.404 4.404 6 H 0.148 0.852 7 C -0.207 4.207 8 N -0.464 5.464 9 Si 0.811 3.189 10 H -0.179 1.179 11 H -0.202 1.202 12 H -0.201 1.201 13 S 2.640 3.360 14 O -0.991 6.991 15 O -1.011 7.011 16 C -0.861 4.861 17 C -0.057 4.057 18 C -0.156 4.156 19 C 0.434 3.566 20 O -0.411 6.411 21 O -0.308 6.308 22 O -0.047 6.047 23 C 0.104 3.896 24 C -0.162 4.162 25 H 0.239 0.761 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.183 0.817 30 H 0.305 0.695 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.728 4.463 2.565 6.989 hybrid contribution -1.291 -0.046 0.118 1.297 sum -6.019 4.416 2.683 7.933 Atomic orbital electron populations 1.24922 0.96185 1.02091 1.04667 1.23610 0.95087 0.98616 0.97043 1.18510 0.84150 0.84733 1.01699 1.55589 1.71468 1.15128 1.19202 1.20566 1.30744 0.99579 0.89490 0.85181 1.26322 0.95014 0.98744 1.00655 1.70313 1.21226 1.33561 1.21290 0.84918 0.78669 0.78077 0.77255 1.17920 1.20170 1.20066 1.12055 0.77769 0.72235 0.73950 1.93290 1.63136 1.55794 1.86854 1.93277 1.86337 1.40789 1.80712 1.33422 1.30521 1.05102 1.17087 1.21685 0.91095 0.99472 0.93411 1.20835 1.01576 0.89607 1.03608 1.18435 0.79195 0.80789 0.78193 1.90983 1.75914 1.25495 1.48746 1.84622 1.36881 1.47461 1.61885 1.84016 1.40650 1.37023 1.43017 1.23225 0.82014 0.95413 0.88949 1.21188 1.04399 0.94845 0.95782 0.76059 0.86661 0.89859 0.90734 0.81673 0.69484 0.86841 0.86319 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.36 19.25 74.32 1.43 -8.93 16 2 C -0.14 -6.09 11.24 31.13 0.35 -5.74 16 3 C 0.23 10.08 5.45 84.58 0.46 10.54 16 4 N -0.79 -35.02 2.88 -352.51 -1.02 -36.04 16 5 C -0.25 -10.78 8.42 84.03 0.71 -10.07 16 6 H 0.13 5.31 6.22 -2.91 -0.02 5.29 16 7 C 0.01 0.21 4.92 84.86 0.42 0.63 16 8 N -0.83 -34.96 8.97 21.65 0.19 -34.77 16 9 Si 0.99 32.48 29.62 68.60 2.03 34.51 16 10 H -0.26 -8.24 7.11 99.48 0.71 -7.54 16 11 H -0.28 -9.17 7.11 99.48 0.71 -8.46 16 12 H -0.28 -8.91 7.11 99.48 0.71 -8.20 16 13 S 2.54 116.42 5.46 -56.49 -0.31 116.11 16 14 O -1.00 -48.08 15.33 -128.00 -1.96 -50.04 16 15 O -1.02 -50.98 16.36 -128.00 -2.09 -53.08 16 16 C -0.78 -33.13 6.18 22.07 0.14 -32.99 16 17 C -0.04 -1.48 10.32 22.40 0.23 -1.25 16 18 C -0.11 -3.95 7.18 24.04 0.17 -3.78 16 19 C 0.59 18.35 8.30 69.97 0.58 18.93 16 20 O -0.52 -18.02 17.65 19.44 0.34 -17.68 16 21 O -0.49 -10.99 13.44 -56.76 -0.76 -11.76 16 22 O -0.15 -5.55 10.67 -4.82 -0.05 -5.60 16 23 C 0.16 6.04 7.31 24.98 0.18 6.22 16 24 C -0.11 -3.28 9.32 71.24 0.66 -2.62 16 25 H 0.22 7.18 7.80 -4.41 -0.03 7.15 16 26 H 0.12 4.91 6.43 -2.39 -0.02 4.89 16 27 H 0.08 3.49 6.95 -2.39 -0.02 3.47 16 28 H 0.28 11.25 8.31 -92.71 -0.77 10.48 16 29 H 0.17 6.59 8.06 -2.91 -0.02 6.57 16 30 H 0.44 4.42 9.11 -74.06 -0.67 3.74 16 31 H 0.11 3.45 8.00 -2.39 -0.02 3.43 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.11 3.64 5.45 -2.39 -0.01 3.63 16 Total: -1.00 -62.47 314.08 2.23 -60.25 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.52 Total: 27.14 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 5.33 Total: -29.05 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.82 Total: -70.81 kcal Atomic # 8 Polarization: -133.63 SS G_CDS: -4.53 Total: -138.15 kcal Atomic # 14 Polarization: 32.48 SS G_CDS: 2.03 Total: 34.51 kcal Atomic # 16 Polarization: 116.42 SS G_CDS: -0.31 Total: 116.11 kcal Total: -62.47 2.23 -60.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281048572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.106 kcal (2) G-P(sol) polarization free energy of solvation -62.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds