Wall clock time and date at job start Tue Mar 31 2020 04:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46947 * 127.59765 * 3 2 1 5 5 C 1.36936 * 120.00171 * 274.99805 * 4 3 2 6 6 H 1.08001 * 120.00143 * 187.00121 * 5 4 3 7 7 C 1.38813 * 119.99789 * 6.99985 * 5 4 3 8 8 N 1.31613 * 120.00062 * 24.75899 * 7 5 4 9 9 Si 1.86804 * 119.99984 * 204.75616 * 7 5 4 10 10 H 1.48493 * 109.46968 * 89.99995 * 9 7 5 11 11 H 1.48501 * 109.47144 * 210.00170 * 9 7 5 12 12 H 1.48503 * 109.47235 * 330.00358 * 9 7 5 13 13 S 1.65602 * 120.00210 * 95.00134 * 4 3 2 14 14 O 1.42093 * 106.40638 * 150.33645 * 13 4 3 15 15 O 1.42109 * 106.40143 * 17.41153 * 13 4 3 16 16 C 1.76202 * 107.21931 * 263.87818 * 13 4 3 17 17 C 1.38264 * 119.95731 * 89.99307 * 16 13 4 18 18 C 1.38249 * 120.12827 * 180.02562 * 17 16 13 19 19 C 1.38339 * 120.02910 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.04568 * 179.97438 * 19 18 17 21 21 C 1.38905 * 119.90459 * 359.97438 * 19 18 17 22 22 O 1.35955 * 120.06183 * 179.97438 * 21 19 18 23 23 C 1.42900 * 117.00088 * 179.97438 * 22 21 19 24 24 C 1.38188 * 119.94736 * 270.25424 * 16 13 4 25 25 H 4.40637 * 5.51360 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47260 * 7.59422 * 3 2 1 27 27 H 1.09001 * 109.46999 * 247.59515 * 3 2 1 28 28 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 29 29 H 1.08002 * 119.92913 * 359.97438 * 17 16 13 30 30 H 1.07995 * 119.98821 * 180.02562 * 18 17 16 31 31 H 1.09000 * 109.46920 * 59.99972 * 23 22 21 32 32 H 1.09001 * 109.47370 * 300.00659 * 23 22 21 33 33 H 1.09001 * 109.47340 * 179.97438 * 23 22 21 34 34 H 1.07993 * 120.01669 * 359.97438 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8435 -1.0943 5 6 3.2649 0.3225 -2.3539 6 1 3.7294 0.9068 -3.1344 7 6 2.8008 -0.9568 -2.6274 8 7 1.8406 -1.4793 -1.8943 9 14 3.5388 -1.9369 -4.0361 10 1 4.6907 -2.7300 -3.5371 11 1 2.5114 -2.8528 -4.5936 12 1 4.0010 -1.0067 -5.0975 13 16 3.5270 2.4266 -0.8082 14 8 4.5491 2.7604 -1.7371 15 8 3.6836 2.5532 0.5985 16 6 2.1233 3.3993 -1.2421 17 6 1.1585 3.6810 -0.2927 18 6 0.0554 4.4434 -0.6294 19 6 -0.0854 4.9259 -1.9182 20 9 -1.1634 5.6705 -2.2477 21 6 0.8832 4.6436 -2.8730 22 8 0.7477 5.1157 -4.1408 23 6 1.7826 4.7866 -5.0696 24 6 1.9858 3.8749 -2.5322 25 1 -1.0502 -0.0003 0.0001 26 1 3.0098 -1.0178 -0.1358 27 1 3.0091 0.3925 0.9501 28 1 1.5160 -2.3731 -2.0857 29 1 1.2664 3.3040 0.7136 30 1 -0.6966 4.6624 0.1141 31 1 1.8528 3.7032 -5.1665 32 1 2.7328 5.1815 -4.7099 33 1 1.5514 5.2237 -6.0411 34 1 2.7383 3.6509 -3.2737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281402919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:03 Heat of formation + Delta-G solvation = -66.990494 kcal Electronic energy + Delta-G solvation = -24442.282819 eV Core-core repulsion = 20577.398587 eV Total energy + Delta-G solvation = -3864.884232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.04740 -41.02844 -38.48262 -38.11275 -37.78756 -36.39602 -33.75817 -32.88798 -31.95184 -31.32754 -28.34750 -28.33092 -25.66918 -24.15586 -23.65081 -20.46995 -20.08085 -19.43874 -18.71607 -18.30124 -18.15870 -17.92013 -17.29343 -17.20285 -16.43410 -16.19067 -16.12598 -15.64966 -15.35926 -15.19710 -15.05183 -14.28717 -14.24004 -14.00569 -13.58220 -13.54766 -13.10336 -12.81688 -12.75400 -12.67599 -12.60519 -12.48816 -12.30664 -12.27976 -11.99323 -11.70202 -11.34256 -10.90128 -10.54516 -10.21793 -10.09230 -9.43906 -8.36072 -5.82664 -0.43303 -0.09648 0.11129 1.51274 1.57784 1.65195 2.01099 2.05550 2.28812 2.34570 2.52466 2.80729 2.90288 3.00486 3.23884 3.50540 3.68924 3.97726 4.05615 4.12159 4.28264 4.31034 4.39506 4.52931 4.56117 4.64926 4.75025 4.96703 4.98316 5.10942 5.24155 5.41685 5.48873 5.54471 6.11764 6.31726 6.73235 7.14673 7.28892 8.52289 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.006293 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.578363 B = 4448.282401 C = 4903.881185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.142 4.142 3 C 0.234 3.766 4 N -0.798 5.798 5 C -0.266 4.266 6 H 0.118 0.882 7 C 0.003 3.997 8 N -0.826 5.826 9 Si 0.988 3.012 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.261 1.261 13 S 2.535 3.465 14 O -1.003 7.003 15 O -1.011 7.011 16 C -0.645 4.645 17 C -0.046 4.046 18 C -0.128 4.128 19 C 0.087 3.913 20 F -0.133 7.133 21 C 0.065 3.935 22 O -0.324 6.324 23 C 0.012 3.988 24 C -0.098 4.098 25 H 0.224 0.776 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.281 0.719 29 H 0.148 0.852 30 H 0.177 0.823 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 3.804 -2.083 5.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.620 5.620 5 C -0.414 4.414 6 H 0.135 0.865 7 C -0.209 4.209 8 N -0.464 5.464 9 Si 0.810 3.190 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.185 1.185 13 S 2.636 3.364 14 O -0.993 6.993 15 O -1.001 7.001 16 C -0.724 4.724 17 C -0.065 4.065 18 C -0.147 4.147 19 C 0.066 3.934 20 F -0.111 7.111 21 C 0.019 3.981 22 O -0.239 6.239 23 C -0.082 4.082 24 C -0.118 4.118 25 H 0.241 0.759 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.195 0.805 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.587 4.405 -1.685 5.379 hybrid contribution -0.848 -0.238 -1.007 1.338 sum -3.434 4.166 -2.692 6.033 Atomic orbital electron populations 1.24911 0.96117 1.02788 1.03530 1.23469 0.94946 0.98508 0.97568 1.18496 0.84592 0.97241 0.88766 1.55382 1.72461 1.19578 1.14542 1.20277 1.31820 0.98871 0.90444 0.86462 1.26287 0.94816 0.98882 1.00931 1.70295 1.20611 1.17036 1.38460 0.84986 0.78145 0.78115 0.77706 1.19257 1.20497 1.18492 1.11455 0.78433 0.73578 0.72931 1.93319 1.57771 1.84135 1.64039 1.93310 1.87756 1.86616 1.32382 1.32242 1.24612 1.14895 1.00674 1.20796 0.91540 0.94929 0.99222 1.21374 1.00105 0.98991 0.94263 1.17272 0.84900 0.97782 0.93412 1.91473 1.52326 1.74145 1.93184 1.19187 0.95231 0.97971 0.85748 1.86057 1.48788 1.71967 1.17044 1.23481 0.90035 1.02165 0.92481 1.20910 0.97116 0.97108 0.96661 0.75886 0.87321 0.89043 0.90853 0.83385 0.80519 0.92152 0.91772 0.84629 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.79 19.21 74.32 1.43 -8.36 16 2 C -0.14 -6.00 11.06 31.13 0.34 -5.65 16 3 C 0.23 9.95 5.45 84.58 0.46 10.42 16 4 N -0.80 -36.00 2.89 -352.53 -1.02 -37.02 16 5 C -0.27 -12.20 9.46 84.03 0.79 -11.40 16 6 H 0.12 5.32 7.36 -2.91 -0.02 5.30 16 7 C 0.00 0.12 4.94 84.86 0.42 0.54 16 8 N -0.83 -36.77 8.82 21.65 0.19 -36.58 16 9 Si 0.99 34.98 29.62 68.60 2.03 37.01 16 10 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 11 H -0.28 -9.78 7.11 99.48 0.71 -9.07 16 12 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 13 S 2.54 113.81 5.64 -56.49 -0.32 113.50 16 14 O -1.00 -48.73 16.24 -128.00 -2.08 -50.81 16 15 O -1.01 -47.25 15.73 -128.00 -2.01 -49.26 16 16 C -0.64 -26.34 5.97 22.26 0.13 -26.21 16 17 C -0.05 -1.66 9.52 22.28 0.21 -1.45 16 18 C -0.13 -4.07 10.02 22.30 0.22 -3.84 16 19 C 0.09 2.99 7.31 22.45 0.16 3.15 16 20 F -0.13 -4.40 17.11 44.97 0.77 -3.63 16 21 C 0.07 2.37 6.69 22.53 0.15 2.52 16 22 O -0.32 -10.62 10.36 -93.05 -0.96 -11.58 16 23 C 0.01 0.30 9.81 113.37 1.11 1.41 16 24 C -0.10 -3.80 8.51 22.36 0.19 -3.61 16 25 H 0.22 6.87 7.80 -4.41 -0.03 6.83 16 26 H 0.11 4.66 6.55 -2.39 -0.02 4.64 16 27 H 0.09 3.65 6.87 -2.39 -0.02 3.63 16 28 H 0.28 11.79 8.31 -92.71 -0.77 11.02 16 29 H 0.15 5.09 7.61 -2.91 -0.02 5.07 16 30 H 0.18 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 32 H 0.06 1.51 7.67 -2.39 -0.02 1.49 16 33 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.15 5.53 5.86 -2.91 -0.02 5.51 16 Total: -1.00 -58.82 317.57 3.38 -55.45 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.14 Total: 25.41 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 5.63 Total: -42.49 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -0.83 Total: -73.60 kcal Atomic # 8 Polarization: -106.59 SS G_CDS: -5.06 Total: -111.65 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 16 Polarization: 113.81 SS G_CDS: -0.32 Total: 113.50 kcal Total: -58.82 3.38 -55.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281402919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.544 kcal (2) G-P(sol) polarization free energy of solvation -58.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds