Wall clock time and date at job start Tue Mar 31 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47287 * 58.57626 * 3 2 1 5 5 C 1.36939 * 120.00198 * 273.01531 * 4 3 2 6 6 H 1.07997 * 120.00129 * 187.48616 * 5 4 3 7 7 C 1.38812 * 119.99565 * 7.48493 * 5 4 3 8 8 N 1.31614 * 120.00283 * 27.06261 * 7 5 4 9 9 Si 1.86800 * 119.99683 * 207.06100 * 7 5 4 10 10 H 1.48499 * 109.47238 * 59.99901 * 9 7 5 11 11 H 1.48503 * 109.46969 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47195 * 299.99783 * 9 7 5 13 13 S 1.65606 * 120.00273 * 93.01432 * 4 3 2 14 14 O 1.42102 * 106.39676 * 336.46269 * 13 4 3 15 15 O 1.42096 * 106.40391 * 203.54375 * 13 4 3 16 16 C 1.76203 * 107.21592 * 90.00072 * 13 4 3 17 17 C 1.34155 * 125.42940 * 90.00547 * 16 13 4 18 18 C 1.47052 * 105.95146 * 179.97438 * 17 16 13 19 19 C 1.47231 * 127.20329 * 179.97438 * 18 17 16 20 20 O 1.21536 * 120.00066 * 359.97438 * 19 18 17 21 21 O 1.34770 * 120.00403 * 179.97438 * 19 18 17 22 22 C 1.45198 * 117.00168 * 179.97438 * 21 19 18 23 23 C 1.36501 * 105.59815 * 359.97438 * 18 17 16 24 24 O 1.33625 * 108.38193 * 359.97438 * 23 18 17 25 25 H 4.40636 * 5.51359 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47396 * 298.57562 * 3 2 1 27 27 H 1.09003 * 109.47019 * 178.57627 * 3 2 1 28 28 H 0.96999 * 119.99900 * 180.02562 * 8 7 5 29 29 H 1.08004 * 127.02099 * 359.71168 * 17 16 13 30 30 H 1.08999 * 109.47004 * 299.99763 * 22 21 19 31 31 H 1.09000 * 109.47260 * 59.99920 * 22 21 19 32 32 H 1.09002 * 109.47132 * 179.97438 * 22 21 19 33 33 H 1.07995 * 125.81174 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7192 -1.1786 5 6 3.3047 -2.0771 -1.1298 6 1 3.7772 -2.5921 -1.9532 7 6 2.8698 -2.7916 -0.0220 8 7 1.8717 -2.3359 0.7047 9 14 3.7013 -4.4001 0.4372 10 1 5.1397 -4.1531 0.7116 11 1 3.0549 -4.9628 1.6500 12 1 3.5698 -5.3635 -0.6852 13 16 3.4815 0.1091 -2.5701 14 8 2.7227 1.3096 -2.5220 15 8 3.3832 -0.8305 -3.6315 16 6 5.1752 0.5872 -2.4840 17 6 6.2116 -0.1377 -2.9313 18 6 7.4146 0.6586 -2.6465 19 6 8.8110 0.2999 -2.9452 20 8 9.0641 -0.7586 -3.4861 21 8 9.8086 1.1453 -2.6188 22 6 11.1604 0.7260 -2.9426 23 6 6.9659 1.8000 -2.0472 24 8 5.6339 1.7357 -1.9623 25 1 -1.0498 -0.0003 -0.0001 26 1 3.0096 -0.4907 0.9025 27 1 3.0089 1.0282 -0.0255 28 1 1.5680 -2.8350 1.4790 29 1 6.1711 -1.1096 -3.4005 30 1 11.3855 -0.2064 -2.4248 31 1 11.2458 0.5738 -4.0185 32 1 11.8649 1.4960 -2.6279 33 1 7.5824 2.6162 -1.7006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281415899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:52 Heat of formation + Delta-G solvation = -56.159117 kcal Electronic energy + Delta-G solvation = -23728.482823 eV Core-core repulsion = 19851.695485 eV Total energy + Delta-G solvation = -3876.787337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.31244 -40.14688 -36.46492 -36.44972 -36.14134 -34.74038 -32.85472 -32.09831 -31.24373 -30.12500 -27.82760 -26.68119 -24.02946 -23.93891 -21.81586 -20.69207 -19.11376 -18.47240 -17.98412 -17.16888 -16.86116 -16.55251 -16.44268 -15.99021 -15.73107 -15.44922 -14.77088 -14.52260 -13.81045 -13.51411 -13.37094 -13.35637 -12.95313 -12.78511 -12.57063 -12.15246 -11.95240 -11.37934 -11.06569 -11.03151 -10.97064 -10.95229 -10.73045 -10.67392 -10.64850 -10.38630 -9.87943 -9.78074 -9.24464 -8.93783 -8.86595 -8.45376 -6.70950 -4.03327 1.07362 1.19562 1.83093 2.50358 3.05492 3.07843 3.11948 3.14401 3.22377 3.73312 3.97691 4.22204 4.41261 4.51006 4.61788 4.81106 4.91174 4.92575 5.00145 5.14505 5.34944 5.46225 5.59366 5.74405 5.88198 6.03672 6.19758 6.32268 6.58461 6.83916 6.98612 7.11703 7.17496 7.70352 8.01186 8.47015 8.85414 8.95051 10.21041 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.004961 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.139204 B = 5642.231428 C = 6715.478158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.099 4.099 3 C 0.237 3.763 4 N -0.794 5.794 5 C -0.278 4.278 6 H 0.123 0.877 7 C 0.049 3.951 8 N -0.797 5.797 9 Si 0.906 3.094 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.266 1.266 13 S 2.568 3.432 14 O -0.965 6.965 15 O -0.956 6.956 16 C -0.538 4.538 17 C -0.066 4.066 18 C -0.253 4.253 19 C 0.541 3.459 20 O -0.504 6.504 21 O -0.360 6.360 22 C 0.038 3.962 23 C 0.065 3.935 24 O -0.120 6.120 25 H 0.200 0.800 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.280 0.720 29 H 0.172 0.828 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 5.865 0.841 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.102 4.102 3 C 0.113 3.887 4 N -0.621 5.621 5 C -0.422 4.422 6 H 0.141 0.859 7 C -0.166 4.166 8 N -0.434 5.434 9 Si 0.731 3.269 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.191 1.191 13 S 2.655 3.345 14 O -0.954 6.954 15 O -0.945 6.945 16 C -0.655 4.655 17 C -0.087 4.087 18 C -0.256 4.256 19 C 0.386 3.614 20 O -0.393 6.393 21 O -0.278 6.278 22 C -0.055 4.055 23 C -0.009 4.009 24 O -0.011 6.011 25 H 0.217 0.783 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.190 0.810 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.133 6.192 0.092 11.875 hybrid contribution 1.418 -1.181 0.479 1.907 sum 11.551 5.010 0.570 12.604 Atomic orbital electron populations 1.24191 0.95286 1.06016 1.02131 1.22629 0.93819 0.95341 0.98384 1.17882 0.85296 0.94221 0.91337 1.54604 1.62578 1.14039 1.30859 1.19754 1.37743 0.79700 1.05035 0.85928 1.25345 0.94935 1.00433 0.95844 1.70227 1.17494 1.39679 1.16021 0.86308 0.80274 0.81608 0.78754 1.19325 1.20490 1.19077 1.10425 0.75420 0.72903 0.75708 1.93442 1.68580 1.46500 1.86856 1.93454 1.85461 1.61245 1.54313 1.38746 1.27059 0.90136 1.09529 1.22739 0.88057 1.00236 0.97641 1.20670 0.91022 0.99365 1.14577 1.20010 0.84792 0.81525 0.75060 1.90853 1.84585 1.23987 1.39850 1.86527 1.16955 1.48058 1.76230 1.23260 0.78859 1.01723 1.01697 1.25088 0.83299 0.98017 0.94543 1.84017 1.20284 1.35543 1.61252 0.78332 0.88198 0.91007 0.90882 0.81025 0.91765 0.91829 0.88006 0.76274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.44 19.25 29.55 0.57 -4.87 16 2 C -0.10 -2.26 11.20 -37.12 -0.42 -2.67 16 3 C 0.24 5.15 5.10 -6.83 -0.03 5.11 16 4 N -0.79 -18.27 2.88 -62.77 -0.18 -18.45 16 5 C -0.28 -6.59 9.36 -15.06 -0.14 -6.73 16 6 H 0.12 2.86 7.43 -52.49 -0.39 2.47 16 7 C 0.05 1.12 4.86 -17.43 -0.08 1.03 16 8 N -0.80 -18.56 9.10 55.49 0.50 -18.05 16 9 Si 0.91 17.79 29.63 -169.99 -5.04 12.76 16 10 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 11 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 S 2.57 58.05 5.75 -107.50 -0.62 57.43 16 14 O -0.96 -23.30 17.03 -57.28 -0.98 -24.28 16 15 O -0.96 -23.62 16.70 -57.17 -0.95 -24.58 16 16 C -0.54 -10.65 7.32 29.29 0.21 -10.44 16 17 C -0.07 -1.26 10.70 -37.45 -0.40 -1.66 16 18 C -0.25 -4.20 6.31 -103.30 -0.65 -4.85 16 19 C 0.54 8.56 7.95 34.38 0.27 8.84 16 20 O -0.50 -9.24 16.77 -19.29 -0.32 -9.56 16 21 O -0.36 -4.50 10.42 -40.68 -0.42 -4.92 16 22 C 0.04 0.34 10.57 101.05 1.07 1.41 16 23 C 0.06 0.92 11.94 30.11 0.36 1.28 16 24 O -0.12 -2.10 10.52 7.71 0.08 -2.02 16 25 H 0.20 3.41 7.80 -54.10 -0.42 2.98 16 26 H 0.10 2.13 6.52 -51.93 -0.34 1.79 16 27 H 0.07 1.38 7.68 -51.93 -0.40 0.99 16 28 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 29 H 0.17 3.19 8.06 -52.48 -0.42 2.77 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.22 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -31.30 322.94 -5.10 -36.41 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.80 Total: 3.96 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 0.75 Total: -13.56 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.32 Total: -36.50 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -2.60 Total: -65.36 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.04 Total: 12.76 kcal Atomic # 16 Polarization: 58.05 SS G_CDS: -0.62 Total: 57.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.30 -5.10 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281415899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.753 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds