Wall clock time and date at job start Tue Mar 31 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47287 * 58.57626 * 3 2 1 5 5 C 1.36939 * 120.00198 * 273.01531 * 4 3 2 6 6 H 1.07997 * 120.00129 * 187.48616 * 5 4 3 7 7 C 1.38812 * 119.99565 * 7.48493 * 5 4 3 8 8 N 1.31614 * 120.00283 * 27.06261 * 7 5 4 9 9 Si 1.86800 * 119.99683 * 207.06100 * 7 5 4 10 10 H 1.48499 * 109.47238 * 59.99901 * 9 7 5 11 11 H 1.48503 * 109.46969 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47195 * 299.99783 * 9 7 5 13 13 S 1.65606 * 120.00273 * 93.01432 * 4 3 2 14 14 O 1.42102 * 106.39676 * 336.46269 * 13 4 3 15 15 O 1.42096 * 106.40391 * 203.54375 * 13 4 3 16 16 C 1.76203 * 107.21592 * 90.00072 * 13 4 3 17 17 C 1.34155 * 125.42940 * 90.00547 * 16 13 4 18 18 C 1.47052 * 105.95146 * 179.97438 * 17 16 13 19 19 C 1.47231 * 127.20329 * 179.97438 * 18 17 16 20 20 O 1.21536 * 120.00066 * 359.97438 * 19 18 17 21 21 O 1.34770 * 120.00403 * 179.97438 * 19 18 17 22 22 C 1.45198 * 117.00168 * 179.97438 * 21 19 18 23 23 C 1.36501 * 105.59815 * 359.97438 * 18 17 16 24 24 O 1.33625 * 108.38193 * 359.97438 * 23 18 17 25 25 H 4.40636 * 5.51359 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47396 * 298.57562 * 3 2 1 27 27 H 1.09003 * 109.47019 * 178.57627 * 3 2 1 28 28 H 0.96999 * 119.99900 * 180.02562 * 8 7 5 29 29 H 1.08004 * 127.02099 * 359.71168 * 17 16 13 30 30 H 1.08999 * 109.47004 * 299.99763 * 22 21 19 31 31 H 1.09000 * 109.47260 * 59.99920 * 22 21 19 32 32 H 1.09002 * 109.47132 * 179.97438 * 22 21 19 33 33 H 1.07995 * 125.81174 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7192 -1.1786 5 6 3.3047 -2.0771 -1.1298 6 1 3.7772 -2.5921 -1.9532 7 6 2.8698 -2.7916 -0.0220 8 7 1.8717 -2.3359 0.7047 9 14 3.7013 -4.4001 0.4372 10 1 5.1397 -4.1531 0.7116 11 1 3.0549 -4.9628 1.6500 12 1 3.5698 -5.3635 -0.6852 13 16 3.4815 0.1091 -2.5701 14 8 2.7227 1.3096 -2.5220 15 8 3.3832 -0.8305 -3.6315 16 6 5.1752 0.5872 -2.4840 17 6 6.2116 -0.1377 -2.9313 18 6 7.4146 0.6586 -2.6465 19 6 8.8110 0.2999 -2.9452 20 8 9.0641 -0.7586 -3.4861 21 8 9.8086 1.1453 -2.6188 22 6 11.1604 0.7260 -2.9426 23 6 6.9659 1.8000 -2.0472 24 8 5.6339 1.7357 -1.9623 25 1 -1.0498 -0.0003 -0.0001 26 1 3.0096 -0.4907 0.9025 27 1 3.0089 1.0282 -0.0255 28 1 1.5680 -2.8350 1.4790 29 1 6.1711 -1.1096 -3.4005 30 1 11.3855 -0.2064 -2.4248 31 1 11.2458 0.5738 -4.0185 32 1 11.8649 1.4960 -2.6279 33 1 7.5824 2.6162 -1.7006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281415899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:49 Heat of formation + Delta-G solvation = -77.725246 kcal Electronic energy + Delta-G solvation = -23729.418000 eV Core-core repulsion = 19851.695485 eV Total energy + Delta-G solvation = -3877.722515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -43.75057 -41.28935 -38.23662 -38.06319 -37.57374 -36.80561 -34.28121 -33.70574 -32.91200 -31.57392 -28.69934 -28.32796 -25.74675 -25.14251 -23.38271 -22.03075 -20.65651 -20.07608 -19.68044 -18.65985 -18.31230 -18.14617 -17.66924 -17.26371 -17.07601 -16.96409 -16.51982 -16.21645 -15.38677 -15.05555 -14.79438 -14.41272 -14.38691 -14.29327 -14.05324 -13.57414 -13.24223 -13.11811 -13.01555 -12.86783 -12.68941 -12.54417 -12.38139 -12.02200 -11.91459 -11.89445 -11.53578 -11.26247 -10.93652 -10.53619 -10.40039 -10.10675 -8.27382 -5.81755 -0.69673 -0.06049 0.23768 1.39088 1.49164 1.52014 1.58395 1.78594 1.83858 2.06649 2.37505 2.53703 2.68650 2.79989 3.07834 3.32074 3.58667 3.62684 4.00767 4.04696 4.16167 4.29842 4.31720 4.37659 4.59185 4.69272 4.84319 4.92178 5.14299 5.21588 5.49459 5.52757 5.59079 6.34062 6.54724 6.85585 7.21731 7.28826 8.67443 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.004961 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.139204 B = 5642.231428 C = 6715.478158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.141 4.141 3 C 0.243 3.757 4 N -0.824 5.824 5 C -0.343 4.343 6 H 0.110 0.890 7 C 0.021 3.979 8 N -0.844 5.844 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.274 1.274 13 S 2.654 3.346 14 O -0.976 6.976 15 O -0.974 6.974 16 C -0.571 4.571 17 C -0.058 4.058 18 C -0.278 4.278 19 C 0.547 3.453 20 O -0.538 6.538 21 O -0.349 6.349 22 C 0.029 3.971 23 C 0.117 3.883 24 O -0.125 6.125 25 H 0.232 0.768 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.275 0.725 29 H 0.168 0.832 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.219 8.418 0.502 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.144 4.144 3 C 0.118 3.882 4 N -0.654 5.654 5 C -0.478 4.478 6 H 0.127 0.873 7 C -0.188 4.188 8 N -0.481 5.481 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.199 1.199 13 S 2.741 3.259 14 O -0.966 6.966 15 O -0.964 6.964 16 C -0.694 4.694 17 C -0.079 4.079 18 C -0.281 4.281 19 C 0.393 3.607 20 O -0.430 6.430 21 O -0.266 6.266 22 C -0.063 4.063 23 C 0.044 3.956 24 O -0.016 6.016 25 H 0.248 0.752 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.185 0.815 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 12.592 8.600 -0.151 15.250 hybrid contribution 0.991 -1.498 0.230 1.811 sum 13.583 7.102 0.079 15.328 Atomic orbital electron populations 1.25084 0.96389 1.04958 1.00850 1.23299 0.94995 0.96419 0.99637 1.17962 0.84984 0.94682 0.90585 1.53585 1.67899 1.14201 1.29727 1.19503 1.41459 0.80475 1.06377 0.87275 1.25732 0.94940 1.02163 0.96000 1.70296 1.19393 1.41030 1.17429 0.85505 0.79215 0.78801 0.77984 1.19367 1.20275 1.19912 1.04968 0.74645 0.72153 0.74104 1.93464 1.69015 1.47117 1.87017 1.93478 1.86107 1.62366 1.54452 1.37047 1.25369 0.92840 1.14177 1.22944 0.89440 0.99917 0.95626 1.20762 0.91068 0.99979 1.16274 1.19866 0.85129 0.81292 0.74377 1.90849 1.85074 1.25503 1.41546 1.86506 1.17762 1.46842 1.75457 1.23662 0.77372 1.03326 1.01979 1.26219 0.81522 0.97888 0.90020 1.83994 1.22320 1.34106 1.61222 0.75179 0.88361 0.89184 0.91441 0.81451 0.91982 0.91828 0.83921 0.70102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 90. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.79 19.25 74.32 1.43 -9.36 16 2 C -0.14 -6.54 11.20 31.12 0.35 -6.20 16 3 C 0.24 10.75 5.10 84.57 0.43 11.18 16 4 N -0.82 -38.84 2.88 -352.52 -1.02 -39.86 16 5 C -0.34 -17.10 9.36 84.03 0.79 -16.32 16 6 H 0.11 5.45 7.43 -2.91 -0.02 5.43 16 7 C 0.02 0.99 4.86 84.86 0.41 1.40 16 8 N -0.84 -41.50 9.10 21.65 0.20 -41.31 16 9 Si 0.96 38.67 29.63 68.60 2.03 40.70 16 10 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 S 2.65 118.88 5.75 -56.49 -0.32 118.56 16 14 O -0.98 -45.89 17.03 -127.89 -2.18 -48.07 16 15 O -0.97 -48.31 16.70 -128.00 -2.14 -50.44 16 16 C -0.57 -21.57 7.32 66.89 0.49 -21.08 16 17 C -0.06 -2.13 10.70 23.65 0.25 -1.87 16 18 C -0.28 -8.27 6.31 -19.01 -0.12 -8.39 16 19 C 0.55 15.68 7.95 70.19 0.56 16.24 16 20 O -0.54 -18.88 16.77 19.72 0.33 -18.55 16 21 O -0.35 -7.22 10.42 -56.81 -0.59 -7.81 16 22 C 0.03 0.41 10.57 113.37 1.20 1.61 16 23 C 0.12 2.71 11.94 67.41 0.80 3.52 16 24 O -0.12 -3.92 10.52 4.67 0.05 -3.87 16 25 H 0.23 7.69 7.80 -4.43 -0.03 7.65 16 26 H 0.10 4.38 6.52 -2.39 -0.02 4.36 16 27 H 0.09 3.46 7.68 -2.39 -0.02 3.44 16 28 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 29 H 0.17 6.20 8.06 -2.91 -0.02 6.17 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.28 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -69.97 322.94 4.11 -65.86 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.15 Total: 14.06 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 6.59 Total: -29.27 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -0.82 Total: -81.17 kcal Atomic # 8 Polarization: -124.21 SS G_CDS: -4.53 Total: -128.74 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 16 Polarization: 118.88 SS G_CDS: -0.32 Total: 118.56 kcal Total: -69.97 4.11 -65.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281415899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.868 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds