Wall clock time and date at job start Tue Mar 31 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46973 * 157.54550 * 3 2 1 5 5 C 1.36940 * 119.99740 * 273.01378 * 4 3 2 6 6 H 1.07998 * 119.99927 * 187.48239 * 5 4 3 7 7 C 1.38816 * 119.99710 * 7.48667 * 5 4 3 8 8 N 1.31610 * 120.00361 * 27.06001 * 7 5 4 9 9 Si 1.86807 * 119.99534 * 207.05838 * 7 5 4 10 10 H 1.48504 * 109.46943 * 60.00224 * 9 7 5 11 11 H 1.48500 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47048 * 300.00178 * 9 7 5 13 13 S 1.65593 * 120.00230 * 93.01263 * 4 3 2 14 14 O 1.42102 * 106.40225 * 203.54017 * 13 4 3 15 15 O 1.42104 * 106.40491 * 336.46435 * 13 4 3 16 16 C 1.76204 * 107.21901 * 90.00054 * 13 4 3 17 17 C 1.35163 * 125.60833 * 89.99716 * 16 13 4 18 18 C 1.40312 * 107.12785 * 180.02562 * 17 16 13 19 19 C 1.36644 * 106.70063 * 0.02562 * 18 17 16 20 20 C 1.46465 * 125.99447 * 180.02562 * 19 18 17 21 21 O 1.21626 * 120.00222 * 359.97438 * 20 19 18 22 22 O 1.34898 * 120.00182 * 180.02562 * 20 19 18 23 23 C 1.45195 * 117.00093 * 179.97438 * 22 20 19 24 24 O 1.33917 * 125.60948 * 269.69702 * 16 13 4 25 25 H 4.40643 * 5.51495 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46993 * 277.54054 * 3 2 1 27 27 H 1.08993 * 109.47490 * 37.54245 * 3 2 1 28 28 H 0.96999 * 120.00065 * 179.97438 * 8 7 5 29 29 H 1.08000 * 126.44080 * 359.97438 * 17 16 13 30 30 H 1.08001 * 126.65196 * 180.02562 * 18 17 16 31 31 H 1.08993 * 109.47408 * 299.99810 * 23 22 20 32 32 H 1.08999 * 109.47119 * 60.00571 * 23 22 20 33 33 H 1.09000 * 109.46997 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2774 -0.5276 5 6 3.3031 1.4409 -1.8766 6 1 3.7748 2.3348 -2.2572 7 6 2.8683 0.4577 -2.7548 8 7 1.8708 -0.3317 -2.4174 9 14 3.6991 0.2553 -4.4157 10 1 5.1378 -0.0535 -4.2151 11 1 3.0530 -0.8553 -5.1602 12 1 3.5666 1.5141 -5.1921 13 16 3.4802 2.5228 0.5073 14 8 3.3810 3.7177 -0.2553 15 8 2.7221 2.2879 1.6861 16 6 5.1742 2.3643 0.9655 17 6 6.2205 2.9222 0.3166 18 6 7.3827 2.5475 1.0078 19 6 6.9820 1.7693 2.0570 20 6 7.8585 1.1517 3.0548 21 8 9.0622 1.3136 2.9903 22 8 7.3309 0.4023 4.0446 23 6 8.2593 -0.1793 4.9975 24 8 5.6364 1.6761 2.0172 25 1 -1.0502 -0.0004 0.0000 26 1 3.0094 -0.1340 1.0188 27 1 3.0097 -0.8139 -0.6261 28 1 1.5667 -1.0185 -3.0313 29 1 6.1714 3.5395 -0.5682 30 1 8.3974 2.8212 0.7588 31 1 8.9550 -0.8345 4.4734 32 1 8.8140 0.6156 5.4959 33 1 7.7056 -0.7554 5.7389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281534742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:40 Heat of formation + Delta-G solvation = -52.570307 kcal Electronic energy + Delta-G solvation = -23842.021657 eV Core-core repulsion = 19965.389942 eV Total energy + Delta-G solvation = -3876.631715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.39834 -40.24217 -36.65751 -36.52257 -36.13558 -34.72049 -32.92385 -32.17955 -31.29520 -30.38509 -27.78901 -26.73798 -24.14011 -23.87580 -21.82545 -20.65585 -18.95088 -18.57882 -18.08702 -17.64913 -17.03788 -16.84421 -16.55095 -16.27719 -15.58797 -14.84285 -14.57470 -14.27407 -13.82109 -13.45664 -13.39485 -13.21557 -13.03035 -12.82408 -12.60522 -12.35526 -12.02253 -11.41526 -11.11578 -11.08960 -11.00276 -10.99878 -10.99245 -10.71312 -10.63149 -10.44186 -9.95897 -9.87271 -9.27107 -8.90826 -8.84864 -8.51577 -6.81062 -4.09249 0.69661 1.12482 2.18560 2.30897 2.87881 3.01929 3.06963 3.08916 3.24800 3.69693 3.91008 4.19541 4.38745 4.44249 4.77839 4.87031 4.92165 4.99172 5.00169 5.32433 5.40974 5.55734 5.59746 5.69427 5.88122 6.01052 6.07374 6.38635 6.55138 6.79084 6.90020 7.03776 7.11575 7.52468 7.92633 8.37065 8.76012 8.92070 10.09818 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.004807 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.845451 B = 5823.366070 C = 6233.715212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.100 4.100 3 C 0.234 3.766 4 N -0.787 5.787 5 C -0.266 4.266 6 H 0.126 0.874 7 C 0.047 3.953 8 N -0.787 5.787 9 Si 0.909 3.091 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.265 1.265 13 S 2.544 3.456 14 O -0.957 6.957 15 O -0.963 6.963 16 C -0.490 4.490 17 C -0.144 4.144 18 C -0.119 4.119 19 C -0.068 4.068 20 C 0.557 3.443 21 O -0.492 6.492 22 O -0.345 6.345 23 C 0.036 3.964 24 O -0.100 6.100 25 H 0.200 0.800 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.282 0.718 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 -2.352 5.126 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.102 4.102 3 C 0.109 3.891 4 N -0.613 5.613 5 C -0.413 4.413 6 H 0.143 0.857 7 C -0.168 4.168 8 N -0.424 5.424 9 Si 0.733 3.267 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.190 1.190 13 S 2.632 3.368 14 O -0.945 6.945 15 O -0.952 6.952 16 C -0.611 4.611 17 C -0.165 4.165 18 C -0.139 4.139 19 C -0.121 4.121 20 C 0.402 3.598 21 O -0.382 6.382 22 O -0.261 6.261 23 C -0.058 4.058 24 O 0.009 5.991 25 H 0.217 0.783 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.188 0.812 30 H 0.183 0.817 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.164 -1.867 5.966 9.508 hybrid contribution 1.258 -0.426 -1.035 1.684 sum 8.422 -2.293 4.931 10.025 Atomic orbital electron populations 1.24205 0.95282 1.01468 1.06470 1.22576 0.93753 0.98807 0.95095 1.17913 0.85394 0.88570 0.97176 1.54907 1.61162 1.29304 1.15904 1.19870 1.36941 1.05084 0.79416 0.85670 1.25435 0.94942 0.95607 1.00854 1.70228 1.17019 1.17303 1.37869 0.86260 0.80284 0.78969 0.81180 1.19200 1.20395 1.18965 1.11847 0.75797 0.75977 0.73149 1.93435 1.85413 1.45908 1.69726 1.93443 1.68615 1.85644 1.47500 1.39566 1.27849 1.01416 0.92272 1.21829 0.90311 1.02171 1.02141 1.22083 1.00827 0.97269 0.93695 1.21158 0.83410 1.07315 1.00179 1.19224 0.85488 0.75870 0.79228 1.90918 1.14176 1.59212 1.73853 1.86714 1.40955 1.60845 1.37541 1.23359 0.93382 0.98280 0.90735 1.84333 1.18677 1.55954 1.40184 0.78270 0.90829 0.88233 0.90627 0.81171 0.81742 0.91563 0.91626 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.34 19.25 29.55 0.57 -4.77 16 2 C -0.10 -2.25 11.20 -37.12 -0.42 -2.67 16 3 C 0.23 5.07 5.10 -6.83 -0.03 5.03 16 4 N -0.79 -17.87 2.88 -62.77 -0.18 -18.05 16 5 C -0.27 -6.10 9.36 -15.06 -0.14 -6.24 16 6 H 0.13 2.77 7.43 -52.49 -0.39 2.38 16 7 C 0.05 1.04 4.86 -17.43 -0.08 0.96 16 8 N -0.79 -17.81 9.10 55.49 0.50 -17.30 16 9 Si 0.91 16.96 29.63 -169.99 -5.04 11.92 16 10 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 11 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 12 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 13 S 2.54 57.41 5.75 -107.50 -0.62 56.79 16 14 O -0.96 -23.11 16.71 -57.17 -0.96 -24.07 16 15 O -0.96 -23.63 17.03 -57.27 -0.98 -24.60 16 16 C -0.49 -9.92 7.35 29.64 0.22 -9.71 16 17 C -0.14 -2.57 10.58 -39.90 -0.42 -3.00 16 18 C -0.12 -1.95 10.62 -39.38 -0.42 -2.37 16 19 C -0.07 -1.21 7.18 -36.85 -0.26 -1.47 16 20 C 0.56 9.05 7.93 34.04 0.27 9.32 16 21 O -0.49 -8.19 16.66 -19.36 -0.32 -8.51 16 22 O -0.34 -5.05 10.58 -42.48 -0.45 -5.50 16 23 C 0.04 0.35 10.57 101.05 1.07 1.42 16 24 O -0.10 -2.00 10.67 4.67 0.05 -1.95 16 25 H 0.20 3.37 7.80 -54.08 -0.42 2.94 16 26 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 27 H 0.10 2.10 6.52 -51.93 -0.34 1.76 16 28 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 29 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 30 H 0.17 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -29.81 322.60 -5.58 -35.38 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -2.80 Total: 4.51 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 0.34 Total: -13.49 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.32 Total: -35.35 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -2.65 Total: -64.63 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.04 Total: 11.92 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -0.62 Total: 56.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.81 -5.58 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.187 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds