Wall clock time and date at job start Tue Mar 31 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46973 * 157.54550 * 3 2 1 5 5 C 1.36940 * 119.99740 * 273.01378 * 4 3 2 6 6 H 1.07998 * 119.99927 * 187.48239 * 5 4 3 7 7 C 1.38816 * 119.99710 * 7.48667 * 5 4 3 8 8 N 1.31610 * 120.00361 * 27.06001 * 7 5 4 9 9 Si 1.86807 * 119.99534 * 207.05838 * 7 5 4 10 10 H 1.48504 * 109.46943 * 60.00224 * 9 7 5 11 11 H 1.48500 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47048 * 300.00178 * 9 7 5 13 13 S 1.65593 * 120.00230 * 93.01263 * 4 3 2 14 14 O 1.42102 * 106.40225 * 203.54017 * 13 4 3 15 15 O 1.42104 * 106.40491 * 336.46435 * 13 4 3 16 16 C 1.76204 * 107.21901 * 90.00054 * 13 4 3 17 17 C 1.35163 * 125.60833 * 89.99716 * 16 13 4 18 18 C 1.40312 * 107.12785 * 180.02562 * 17 16 13 19 19 C 1.36644 * 106.70063 * 0.02562 * 18 17 16 20 20 C 1.46465 * 125.99447 * 180.02562 * 19 18 17 21 21 O 1.21626 * 120.00222 * 359.97438 * 20 19 18 22 22 O 1.34898 * 120.00182 * 180.02562 * 20 19 18 23 23 C 1.45195 * 117.00093 * 179.97438 * 22 20 19 24 24 O 1.33917 * 125.60948 * 269.69702 * 16 13 4 25 25 H 4.40643 * 5.51495 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46993 * 277.54054 * 3 2 1 27 27 H 1.08993 * 109.47490 * 37.54245 * 3 2 1 28 28 H 0.96999 * 120.00065 * 179.97438 * 8 7 5 29 29 H 1.08000 * 126.44080 * 359.97438 * 17 16 13 30 30 H 1.08001 * 126.65196 * 180.02562 * 18 17 16 31 31 H 1.08993 * 109.47408 * 299.99810 * 23 22 20 32 32 H 1.08999 * 109.47119 * 60.00571 * 23 22 20 33 33 H 1.09000 * 109.46997 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2774 -0.5276 5 6 3.3031 1.4409 -1.8766 6 1 3.7748 2.3348 -2.2572 7 6 2.8683 0.4577 -2.7548 8 7 1.8708 -0.3317 -2.4174 9 14 3.6991 0.2553 -4.4157 10 1 5.1378 -0.0535 -4.2151 11 1 3.0530 -0.8553 -5.1602 12 1 3.5666 1.5141 -5.1921 13 16 3.4802 2.5228 0.5073 14 8 3.3810 3.7177 -0.2553 15 8 2.7221 2.2879 1.6861 16 6 5.1742 2.3643 0.9655 17 6 6.2205 2.9222 0.3166 18 6 7.3827 2.5475 1.0078 19 6 6.9820 1.7693 2.0570 20 6 7.8585 1.1517 3.0548 21 8 9.0622 1.3136 2.9903 22 8 7.3309 0.4023 4.0446 23 6 8.2593 -0.1793 4.9975 24 8 5.6364 1.6761 2.0172 25 1 -1.0502 -0.0004 0.0000 26 1 3.0094 -0.1340 1.0188 27 1 3.0097 -0.8139 -0.6261 28 1 1.5667 -1.0185 -3.0313 29 1 6.1714 3.5395 -0.5682 30 1 8.3974 2.8212 0.7588 31 1 8.9550 -0.8345 4.4734 32 1 8.8140 0.6156 5.4959 33 1 7.7056 -0.7554 5.7389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281534742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:36 Heat of formation + Delta-G solvation = -72.052034 kcal Electronic energy + Delta-G solvation = -23842.866448 eV Core-core repulsion = 19965.389942 eV Total energy + Delta-G solvation = -3877.476506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -43.86018 -41.44235 -38.19161 -38.04815 -37.82261 -36.66085 -34.37387 -33.81060 -32.96503 -31.76332 -28.74470 -28.39465 -25.80164 -25.22282 -23.27553 -21.98300 -20.60249 -20.08160 -19.72698 -19.13862 -18.49491 -18.24253 -17.96536 -17.88272 -16.95797 -16.57469 -16.21321 -15.57099 -15.31781 -15.06034 -14.75699 -14.42941 -14.37307 -14.29512 -14.21829 -13.61395 -13.21460 -13.19363 -12.98846 -12.79193 -12.66496 -12.48785 -12.39233 -12.16911 -12.01136 -11.99383 -11.54519 -11.33460 -10.95984 -10.57673 -10.35755 -10.15000 -8.39794 -5.82143 -0.79219 -0.53876 0.75314 1.09519 1.53086 1.56022 1.57105 1.63258 1.85650 2.06445 2.35003 2.51347 2.69786 2.77864 3.10024 3.51572 3.64636 3.77560 3.99160 4.14895 4.17540 4.28400 4.28638 4.34721 4.55402 4.65235 4.87810 4.93344 5.01685 5.15205 5.40972 5.44975 5.52489 6.26344 6.30529 6.74570 7.10742 7.25610 8.53033 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.004807 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.845451 B = 5823.366070 C = 6233.715212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.142 4.142 3 C 0.236 3.764 4 N -0.803 5.803 5 C -0.311 4.311 6 H 0.124 0.876 7 C 0.018 3.982 8 N -0.820 5.820 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.267 1.267 13 S 2.592 3.408 14 O -0.974 6.974 15 O -0.987 6.987 16 C -0.529 4.529 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.071 4.071 20 C 0.560 3.440 21 O -0.495 6.495 22 O -0.357 6.357 23 C 0.026 3.974 24 O -0.117 6.117 25 H 0.234 0.766 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.283 0.717 29 H 0.192 0.808 30 H 0.200 0.800 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.092 -2.300 5.527 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.630 5.630 5 C -0.454 4.454 6 H 0.141 0.859 7 C -0.194 4.194 8 N -0.457 5.457 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.191 1.191 13 S 2.682 3.318 14 O -0.963 6.963 15 O -0.977 6.977 16 C -0.654 4.654 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.124 4.124 20 C 0.405 3.595 21 O -0.386 6.386 22 O -0.273 6.273 23 C -0.066 4.066 24 O -0.010 6.010 25 H 0.250 0.750 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.209 0.791 30 H 0.217 0.783 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.802 -1.845 6.305 10.983 hybrid contribution 0.894 -0.361 -0.846 1.283 sum 9.696 -2.206 5.458 11.343 Atomic orbital electron populations 1.25112 0.96358 1.00006 1.05175 1.23125 0.94764 1.00217 0.96381 1.17953 0.85352 0.88103 0.97492 1.54369 1.63545 1.29201 1.15930 1.19933 1.39394 1.06408 0.79652 0.85860 1.26017 0.94818 0.95235 1.03350 1.70290 1.18124 1.18352 1.38984 0.85339 0.79242 0.78503 0.77552 1.18861 1.20353 1.19140 1.09054 0.75427 0.74992 0.72317 1.93422 1.86089 1.46443 1.70309 1.93418 1.69762 1.85972 1.48505 1.38643 1.27420 1.04807 0.94499 1.22225 0.90085 1.00553 1.01889 1.22487 1.01895 0.96123 0.92506 1.21738 0.82655 1.07101 1.00916 1.19025 0.85035 0.76026 0.79402 1.90914 1.14096 1.59511 1.74062 1.86700 1.42536 1.60396 1.37682 1.23791 0.93611 0.98836 0.90371 1.84281 1.20032 1.56387 1.40300 0.74950 0.89924 0.88309 0.90654 0.79104 0.78261 0.90732 0.90707 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 126. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.32 19.25 74.32 1.43 -8.89 16 2 C -0.14 -6.53 11.20 31.12 0.35 -6.19 16 3 C 0.24 10.46 5.10 84.57 0.43 10.90 16 4 N -0.80 -37.15 2.88 -352.51 -1.02 -38.16 16 5 C -0.31 -14.52 9.36 84.03 0.79 -13.73 16 6 H 0.12 5.57 7.43 -2.91 -0.02 5.55 16 7 C 0.02 0.81 4.86 84.86 0.41 1.23 16 8 N -0.82 -37.92 9.10 21.65 0.20 -37.72 16 9 Si 0.97 35.10 29.63 68.60 2.03 37.13 16 10 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 11 H -0.28 -9.90 7.11 99.48 0.71 -9.19 16 12 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 13 S 2.59 117.65 5.75 -56.49 -0.33 117.33 16 14 O -0.97 -47.10 16.71 -128.00 -2.14 -49.24 16 15 O -0.99 -48.89 17.03 -127.91 -2.18 -51.07 16 16 C -0.53 -21.06 7.35 67.11 0.49 -20.57 16 17 C -0.13 -4.29 10.58 22.07 0.23 -4.05 16 18 C -0.11 -3.32 10.62 22.40 0.24 -3.08 16 19 C -0.07 -2.41 7.18 24.04 0.17 -2.24 16 20 C 0.56 17.07 7.93 69.96 0.55 17.62 16 21 O -0.50 -15.22 16.66 19.43 0.32 -14.89 16 22 O -0.36 -9.79 10.58 -56.75 -0.60 -10.39 16 23 C 0.03 0.44 10.57 113.37 1.20 1.63 16 24 O -0.12 -4.60 10.67 -4.83 -0.05 -4.65 16 25 H 0.23 7.52 7.80 -4.41 -0.03 7.49 16 26 H 0.08 3.37 7.68 -2.39 -0.02 3.35 16 27 H 0.10 4.33 6.52 -2.39 -0.02 4.31 16 28 H 0.28 12.23 8.31 -92.71 -0.77 11.46 16 29 H 0.19 5.52 8.06 -2.91 -0.02 5.50 16 30 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.61 322.60 3.70 -59.92 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.15 Total: 19.11 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 6.30 Total: -27.37 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -0.82 Total: -75.88 kcal Atomic # 8 Polarization: -125.59 SS G_CDS: -4.65 Total: -130.24 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 16 Polarization: 117.65 SS G_CDS: -0.33 Total: 117.33 kcal Total: -63.61 3.70 -59.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.136 kcal (2) G-P(sol) polarization free energy of solvation -63.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds