Wall clock time and date at job start Tue Mar 31 2020 04:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 116.99891 * 2 1 4 4 C 1.37783 * 119.62307 * 359.97438 * 3 2 1 5 5 C 1.40756 * 120.35610 * 179.70132 * 4 3 2 6 6 C 1.40301 * 117.60623 * 0.02562 * 5 4 3 7 7 C 1.36506 * 122.11142 * 359.97438 * 6 5 4 8 8 C 1.39204 * 119.76486 * 359.97438 * 7 6 5 9 9 O 1.35804 * 120.29214 * 180.02562 * 8 7 6 10 10 C 1.42902 * 117.00249 * 359.97072 * 9 8 7 11 11 S 1.77158 * 103.76673 * 179.97438 * 6 5 4 12 12 O 1.42098 * 107.51456 * 112.02458 * 11 6 5 13 13 O 1.42097 * 107.51667 * 247.97722 * 11 6 5 14 14 N 1.67170 * 99.81855 * 0.02562 * 11 6 5 15 15 C 1.36900 * 127.05383 * 179.97438 * 14 11 6 16 16 H 1.07997 * 120.00018 * 175.91615 * 15 14 11 17 17 C 1.39020 * 119.99988 * 355.91115 * 15 14 11 18 18 N 1.31380 * 120.00070 * 7.68322 * 17 15 14 19 19 Si 1.86799 * 120.00071 * 187.67954 * 17 15 14 20 20 H 1.48499 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47363 * 120.00173 * 19 17 15 22 22 H 1.48499 * 109.47210 * 240.00108 * 19 17 15 23 23 C 1.34062 * 105.88751 * 359.97438 * 14 11 6 24 24 O 1.21618 * 120.95944 * 180.02562 * 23 14 11 25 25 H 1.09001 * 109.46618 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47406 * 300.00152 * 1 2 3 27 27 H 1.08997 * 109.47415 * 60.00769 * 1 2 3 28 28 H 1.08000 * 119.82483 * 359.73085 * 4 3 2 29 29 H 1.08002 * 120.11565 * 180.02562 * 7 6 5 30 30 H 1.08992 * 109.46992 * 300.00246 * 10 9 8 31 31 H 1.09002 * 109.46388 * 60.00235 * 10 9 8 32 32 H 1.08993 * 109.47005 * 179.97438 * 10 9 8 33 33 H 0.97000 * 120.00377 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2884 2.3624 -0.0005 5 6 1.9113 3.6246 0.0058 6 6 3.3139 3.6574 0.0120 7 6 4.0664 2.5185 0.0125 8 6 3.4391 1.2758 0.0073 9 8 4.1772 0.1358 0.0083 10 6 5.5986 0.2833 0.0142 11 16 3.6951 5.3875 0.0178 12 8 4.2779 5.6927 1.2773 13 8 4.2888 5.6988 -1.2350 14 7 2.1478 6.0203 0.0133 15 6 1.7979 7.3439 0.0158 16 1 0.7582 7.6277 -0.0543 17 6 2.7809 8.3225 0.1085 18 7 4.0495 7.9878 0.0418 19 14 2.2979 10.1136 0.3279 20 1 0.8178 10.2251 0.3738 21 1 2.8721 10.6294 1.5965 22 1 2.8197 10.9102 -0.8115 23 6 1.3200 4.9658 0.0069 24 8 0.1134 5.1177 0.0019 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2105 2.2954 -0.0054 29 1 5.1445 2.5813 0.0178 30 1 5.9105 0.8334 -0.8736 31 1 5.9033 0.8303 0.9064 32 1 6.0660 -0.7014 0.0148 33 1 4.7354 8.6707 0.1061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299679638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:33 Heat of formation + Delta-G solvation = -123.918913 kcal Electronic energy + Delta-G solvation = -24488.226924 eV Core-core repulsion = 20608.501301 eV Total energy + Delta-G solvation = -3879.725623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.78845 -39.26403 -38.60088 -36.54885 -36.02814 -34.96103 -34.56321 -32.53713 -30.56590 -30.41725 -27.96007 -27.37280 -25.67838 -23.15482 -22.52297 -20.75098 -19.76213 -18.57601 -18.12201 -17.31100 -16.77336 -16.25289 -15.92004 -15.50048 -15.39098 -15.36460 -15.14290 -14.60206 -14.41370 -14.27491 -13.68296 -13.48918 -13.29078 -12.75391 -12.55824 -12.12110 -11.79524 -11.70672 -11.53277 -11.47862 -11.31905 -11.15923 -10.91157 -10.85906 -10.52919 -10.34043 -10.18159 -10.01639 -9.27475 -8.94649 -8.78517 -8.04482 -7.05080 -4.43461 0.64796 1.08580 1.10433 2.86340 3.02512 3.08817 3.10957 3.13809 3.17985 3.48381 3.78706 3.97160 4.21893 4.50995 4.73580 4.76260 4.93063 4.95675 5.08243 5.08314 5.09693 5.24549 5.38621 5.41652 5.50954 5.61765 5.78270 5.95080 5.98413 6.36286 6.75747 6.87327 7.15856 7.38780 7.71451 8.33922 8.55523 8.88762 10.20429 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.005235 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.632544 B = 5347.590962 C = 6393.985825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.302 6.302 3 C 0.130 3.870 4 C -0.118 4.118 5 C -0.073 4.073 6 C -0.656 4.656 7 C -0.053 4.053 8 C 0.098 3.902 9 O -0.300 6.300 10 C 0.018 3.982 11 S 2.703 3.297 12 O -0.922 6.922 13 O -0.924 6.924 14 N -0.740 5.740 15 C -0.278 4.278 16 H 0.124 0.876 17 C 0.016 3.984 18 N -0.895 5.895 19 Si 0.971 3.029 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.466 3.534 24 O -0.529 6.529 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -12.562 0.192 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.216 6.216 3 C 0.083 3.917 4 C -0.139 4.139 5 C -0.079 4.079 6 C -0.736 4.736 7 C -0.072 4.072 8 C 0.051 3.949 9 O -0.214 6.214 10 C -0.077 4.077 11 S 2.786 3.214 12 O -0.912 6.912 13 O -0.913 6.913 14 N -0.570 5.570 15 C -0.405 4.405 16 H 0.142 0.858 17 C -0.187 4.187 18 N -0.538 5.538 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.198 1.198 23 C 0.254 3.746 24 O -0.409 6.409 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.920 -12.262 0.197 12.298 hybrid contribution -0.595 0.259 0.044 0.650 sum 0.325 -12.003 0.241 12.010 Atomic orbital electron populations 1.23179 0.78119 1.04178 1.02033 1.86194 1.21487 1.25236 1.88642 1.17951 0.88948 0.85023 0.99733 1.20790 1.00655 0.88988 1.03458 1.20028 0.92233 0.94289 1.01321 1.31924 1.02571 1.26319 1.12793 1.19735 0.99799 0.88589 0.99113 1.18458 0.88387 0.86087 1.01975 1.86112 1.19019 1.27492 1.88740 1.23199 0.78257 1.04215 1.01984 1.02882 0.72462 0.70602 0.75501 1.93513 1.73105 1.81342 1.43229 1.93501 1.72962 1.81041 1.43774 1.51873 1.25493 1.11144 1.68466 1.19577 0.96471 0.75831 1.48587 0.85835 1.25690 0.94201 1.03380 0.95478 1.68496 1.00384 1.38129 1.46768 0.85146 0.79293 0.77566 0.78523 1.18488 1.19614 1.19753 1.17789 0.88917 0.83509 0.84350 1.90614 1.13799 1.86066 1.50383 0.87912 0.92155 0.92154 0.83075 0.83502 0.92150 0.92163 0.87866 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.80 101.05 0.99 1.19 16 2 O -0.30 -4.28 10.27 -34.41 -0.35 -4.64 16 3 C 0.13 2.11 6.68 -39.31 -0.26 1.85 16 4 C -0.12 -2.08 9.01 -38.80 -0.35 -2.43 16 5 C -0.07 -1.56 6.08 -104.81 -0.64 -2.20 16 6 C -0.66 -13.64 6.52 -39.43 -0.26 -13.90 16 7 C -0.05 -0.91 9.00 -39.85 -0.36 -1.26 16 8 C 0.10 1.59 6.73 -38.78 -0.26 1.33 16 9 O -0.30 -4.22 10.27 -33.79 -0.35 -4.57 16 10 C 0.02 0.18 9.82 101.05 0.99 1.17 16 11 S 2.70 67.89 4.22 -107.50 -0.45 67.44 16 12 O -0.92 -24.60 16.99 -56.97 -0.97 -25.57 16 13 O -0.92 -24.75 17.05 -56.97 -0.97 -25.73 16 14 N -0.74 -19.76 3.17 -14.73 -0.05 -19.80 16 15 C -0.28 -7.55 9.98 -15.00 -0.15 -7.70 16 16 H 0.12 3.24 7.70 -52.49 -0.40 2.84 16 17 C 0.02 0.42 5.48 -17.45 -0.10 0.32 16 18 N -0.89 -24.65 9.25 55.50 0.51 -24.14 16 19 Si 0.97 19.99 29.56 -169.99 -5.02 14.97 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 23 C 0.47 11.61 7.56 -13.22 -0.10 11.51 16 24 O -0.53 -13.88 17.37 5.26 0.09 -13.79 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.56 7.64 -51.93 -0.40 0.16 16 27 H 0.06 0.56 7.63 -51.93 -0.40 0.16 16 28 H 0.15 2.30 6.19 -52.49 -0.33 1.97 16 29 H 0.15 2.01 6.35 -52.49 -0.33 1.68 16 30 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 31 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.30 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -35.06 301.59 -6.14 -41.20 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.63 Total: 0.20 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.49 Total: -10.12 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.47 Total: -43.95 kcal Atomic # 8 Polarization: -71.74 SS G_CDS: -2.55 Total: -74.29 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 67.89 SS G_CDS: -0.45 Total: 67.44 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.06 -6.14 -41.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299679638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.717 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds