Wall clock time and date at job start Tue Mar 31 2020 04:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 116.99891 * 2 1 4 4 C 1.37783 * 119.62307 * 359.97438 * 3 2 1 5 5 C 1.40756 * 120.35610 * 179.70132 * 4 3 2 6 6 C 1.40301 * 117.60623 * 0.02562 * 5 4 3 7 7 C 1.36506 * 122.11142 * 359.97438 * 6 5 4 8 8 C 1.39204 * 119.76486 * 359.97438 * 7 6 5 9 9 O 1.35804 * 120.29214 * 180.02562 * 8 7 6 10 10 C 1.42902 * 117.00249 * 359.97072 * 9 8 7 11 11 S 1.77158 * 103.76673 * 179.97438 * 6 5 4 12 12 O 1.42098 * 107.51456 * 112.02458 * 11 6 5 13 13 O 1.42097 * 107.51667 * 247.97722 * 11 6 5 14 14 N 1.67170 * 99.81855 * 0.02562 * 11 6 5 15 15 C 1.36900 * 127.05383 * 179.97438 * 14 11 6 16 16 H 1.07997 * 120.00018 * 175.91615 * 15 14 11 17 17 C 1.39020 * 119.99988 * 355.91115 * 15 14 11 18 18 N 1.31380 * 120.00070 * 7.68322 * 17 15 14 19 19 Si 1.86799 * 120.00071 * 187.67954 * 17 15 14 20 20 H 1.48499 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47363 * 120.00173 * 19 17 15 22 22 H 1.48499 * 109.47210 * 240.00108 * 19 17 15 23 23 C 1.34062 * 105.88751 * 359.97438 * 14 11 6 24 24 O 1.21618 * 120.95944 * 180.02562 * 23 14 11 25 25 H 1.09001 * 109.46618 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47406 * 300.00152 * 1 2 3 27 27 H 1.08997 * 109.47415 * 60.00769 * 1 2 3 28 28 H 1.08000 * 119.82483 * 359.73085 * 4 3 2 29 29 H 1.08002 * 120.11565 * 180.02562 * 7 6 5 30 30 H 1.08992 * 109.46992 * 300.00246 * 10 9 8 31 31 H 1.09002 * 109.46388 * 60.00235 * 10 9 8 32 32 H 1.08993 * 109.47005 * 179.97438 * 10 9 8 33 33 H 0.97000 * 120.00377 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2884 2.3624 -0.0005 5 6 1.9113 3.6246 0.0058 6 6 3.3139 3.6574 0.0120 7 6 4.0664 2.5185 0.0125 8 6 3.4391 1.2758 0.0073 9 8 4.1772 0.1358 0.0083 10 6 5.5986 0.2833 0.0142 11 16 3.6951 5.3875 0.0178 12 8 4.2779 5.6927 1.2773 13 8 4.2888 5.6988 -1.2350 14 7 2.1478 6.0203 0.0133 15 6 1.7979 7.3439 0.0158 16 1 0.7582 7.6277 -0.0543 17 6 2.7809 8.3225 0.1085 18 7 4.0495 7.9878 0.0418 19 14 2.2979 10.1136 0.3279 20 1 0.8178 10.2251 0.3738 21 1 2.8721 10.6294 1.5965 22 1 2.8197 10.9102 -0.8115 23 6 1.3200 4.9658 0.0069 24 8 0.1134 5.1177 0.0019 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2105 2.2954 -0.0054 29 1 5.1445 2.5813 0.0178 30 1 5.9105 0.8334 -0.8736 31 1 5.9033 0.8303 0.9064 32 1 6.0660 -0.7014 0.0148 33 1 4.7354 8.6707 0.1061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299679638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:32 Heat of formation + Delta-G solvation = -151.692710 kcal Electronic energy + Delta-G solvation = -24489.431286 eV Core-core repulsion = 20608.501301 eV Total energy + Delta-G solvation = -3880.929985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18840 -40.97198 -39.69559 -38.02843 -38.00315 -36.93658 -36.56702 -34.41775 -32.02403 -31.81635 -29.18545 -28.19617 -27.42085 -24.72534 -23.86470 -22.52932 -21.52997 -20.07344 -19.59814 -19.06645 -18.15289 -17.56465 -17.45182 -17.23831 -17.11067 -16.83181 -16.30322 -16.20121 -15.96793 -15.68792 -15.67638 -14.93357 -14.58702 -14.11323 -13.98228 -13.62083 -13.52878 -13.22543 -12.93395 -12.91702 -12.83935 -12.51593 -12.42205 -12.32357 -12.21886 -12.09412 -12.01023 -11.67539 -11.23922 -10.74712 -10.33740 -9.34073 -8.98886 -6.50786 -0.91186 -0.78702 -0.29701 1.18666 1.36403 1.53904 1.55212 1.69647 1.95913 2.05517 2.18022 2.22700 2.49083 2.79298 2.82424 3.23793 3.69518 3.73940 3.99953 4.03638 4.20924 4.22338 4.36033 4.39906 4.43190 4.43484 4.53409 4.73009 4.77324 4.89587 5.05630 5.14587 5.72774 5.79023 6.22472 6.35892 6.58653 6.90685 8.27587 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.005235 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.632544 B = 5347.590962 C = 6393.985825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.303 6.303 3 C 0.137 3.863 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.653 4.653 7 C -0.054 4.054 8 C 0.117 3.883 9 O -0.301 6.301 10 C 0.001 3.999 11 S 2.707 3.293 12 O -0.954 6.954 13 O -0.956 6.956 14 N -0.764 5.764 15 C -0.320 4.320 16 H 0.120 0.880 17 C -0.028 4.028 18 N -0.933 5.933 19 Si 1.036 2.964 20 H -0.250 1.250 21 H -0.262 1.262 22 H -0.260 1.260 23 C 0.467 3.533 24 O -0.552 6.552 25 H 0.136 0.864 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -15.074 0.305 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.216 6.216 3 C 0.090 3.910 4 C -0.125 4.125 5 C -0.112 4.112 6 C -0.739 4.739 7 C -0.074 4.074 8 C 0.069 3.931 9 O -0.214 6.214 10 C -0.093 4.093 11 S 2.796 3.204 12 O -0.944 6.944 13 O -0.945 6.945 14 N -0.594 5.594 15 C -0.446 4.446 16 H 0.137 0.863 17 C -0.227 4.227 18 N -0.576 5.576 19 Si 0.854 3.146 20 H -0.173 1.173 21 H -0.186 1.186 22 H -0.184 1.184 23 C 0.256 3.744 24 O -0.433 6.433 25 H 0.154 0.846 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.191 0.809 29 H 0.197 0.803 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.901 -14.757 0.306 14.788 hybrid contribution -0.596 0.584 0.002 0.835 sum 0.305 -14.173 0.308 14.180 Atomic orbital electron populations 1.23600 0.75683 1.06728 1.02793 1.86225 1.23909 1.23616 1.87847 1.18025 0.89308 0.85426 0.98268 1.20990 1.01934 0.87787 1.01824 1.19777 0.92454 0.93569 1.05377 1.31188 1.02620 1.24284 1.15852 1.20129 1.01412 0.87755 0.98069 1.18534 0.88837 0.86335 0.99433 1.86149 1.21352 1.26155 1.87752 1.23677 0.75686 1.06820 1.03100 1.02137 0.71814 0.71967 0.74481 1.93455 1.73935 1.82986 1.44020 1.93447 1.73741 1.82765 1.44574 1.52045 1.26304 1.11650 1.69410 1.19835 0.96861 0.76743 1.51114 0.86255 1.26892 0.93803 1.07927 0.94088 1.68616 1.01470 1.39652 1.47869 0.84267 0.79625 0.71671 0.79057 1.17324 1.18620 1.18420 1.18488 0.88727 0.84672 0.82501 1.90566 1.14659 1.86858 1.51228 0.84611 0.91391 0.91381 0.80946 0.80255 0.91035 0.91038 0.84630 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.30 -7.42 10.27 -79.57 -0.82 -8.23 16 3 C 0.14 4.05 6.68 22.45 0.15 4.20 16 4 C -0.11 -3.50 9.01 22.78 0.21 -3.29 16 5 C -0.11 -4.54 6.08 -19.99 -0.12 -4.66 16 6 C -0.65 -27.14 6.52 22.37 0.15 -27.00 16 7 C -0.05 -1.75 9.00 22.10 0.20 -1.55 16 8 C 0.12 3.43 6.73 22.79 0.15 3.58 16 9 O -0.30 -7.23 10.27 -77.34 -0.79 -8.02 16 10 C 0.00 0.01 9.82 113.37 1.11 1.13 16 11 S 2.71 141.46 4.22 -56.49 -0.24 141.22 16 12 O -0.95 -53.13 16.99 -128.19 -2.18 -55.30 16 13 O -0.96 -53.51 17.05 -128.19 -2.19 -55.70 16 14 N -0.76 -42.79 3.17 -319.16 -1.01 -43.80 16 15 C -0.32 -18.22 9.98 84.09 0.84 -17.38 16 16 H 0.12 6.61 7.70 -2.91 -0.02 6.59 16 17 C -0.03 -1.53 5.48 84.95 0.47 -1.06 16 18 N -0.93 -53.50 9.25 21.68 0.20 -53.30 16 19 Si 1.04 41.57 29.56 68.60 2.03 43.60 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 C 0.47 24.05 7.56 86.53 0.65 24.71 16 24 O -0.55 -29.86 17.37 -4.09 -0.07 -29.93 16 25 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.02 7.64 -2.39 -0.02 1.00 16 27 H 0.07 1.02 7.63 -2.39 -0.02 1.00 16 28 H 0.17 4.86 6.19 -2.91 -0.02 4.84 16 29 H 0.18 4.44 6.35 -2.91 -0.02 4.42 16 30 H 0.07 0.96 7.68 -2.39 -0.02 0.94 16 31 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 32 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.31 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -80.10 301.59 1.03 -79.08 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.18 Total: 10.53 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.91 Total: -20.13 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -0.81 Total: -97.10 kcal Atomic # 8 Polarization: -151.15 SS G_CDS: -6.05 Total: -157.19 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 141.46 SS G_CDS: -0.24 Total: 141.22 kcal Total: -80.10 1.03 -79.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299679638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.615 kcal (2) G-P(sol) polarization free energy of solvation -80.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds