Wall clock time and date at job start Tue Mar 31 2020 04:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46915 * 269.13327 * 3 2 1 5 5 C 1.36933 * 120.00303 * 273.01493 * 4 3 2 6 6 H 1.07998 * 120.00200 * 187.48833 * 5 4 3 7 7 C 1.38817 * 119.99947 * 7.49060 * 5 4 3 8 8 N 1.31622 * 119.99910 * 27.06212 * 7 5 4 9 9 Si 1.86801 * 120.00041 * 207.06424 * 7 5 4 10 10 H 1.48500 * 109.47009 * 89.99935 * 9 7 5 11 11 H 1.48500 * 109.47116 * 209.99672 * 9 7 5 12 12 H 1.48497 * 109.47075 * 330.00120 * 9 7 5 13 13 S 1.65603 * 119.99908 * 93.01965 * 4 3 2 14 14 O 1.42099 * 106.40116 * 336.46099 * 13 4 3 15 15 O 1.42101 * 106.40259 * 203.53598 * 13 4 3 16 16 C 1.76203 * 107.21770 * 89.99809 * 13 4 3 17 17 C 1.39866 * 126.03960 * 270.00201 * 16 13 4 18 18 N 1.30837 * 108.20278 * 179.74299 * 17 16 13 19 19 N 1.40081 * 108.20715 * 0.40069 * 18 17 16 20 20 C 1.46499 * 126.04339 * 179.85738 * 19 18 17 21 21 C 1.50701 * 109.46915 * 304.68919 * 20 19 18 22 22 O 1.20827 * 119.99697 * 0.02562 * 21 20 19 23 23 O 1.34224 * 120.00255 * 179.97438 * 21 20 19 24 24 C 1.34953 * 107.92038 * 359.59090 * 19 18 17 25 25 H 4.40634 * 5.51486 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47284 * 149.13858 * 3 2 1 27 27 H 1.08996 * 109.47383 * 29.13347 * 3 2 1 28 28 H 0.97003 * 120.00064 * 180.02562 * 8 7 5 29 29 H 1.08003 * 125.89933 * 359.97438 * 17 16 13 30 30 H 1.08998 * 109.47165 * 184.69059 * 20 19 18 31 31 H 1.08997 * 109.46871 * 64.68756 * 20 19 18 32 32 H 0.96703 * 117.00483 * 179.97438 * 23 21 20 33 33 H 1.08008 * 126.12413 * 180.21743 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0218 1.3811 5 6 3.3031 1.2160 2.0295 6 1 3.7754 1.2413 3.0004 7 6 2.8673 2.3942 1.4387 8 7 1.8693 2.3703 0.5810 9 14 3.6974 4.0135 1.8612 10 1 4.8239 4.2516 0.9235 11 1 2.7134 5.1195 1.7438 12 1 4.2146 3.9565 3.2520 13 16 3.4821 -1.3987 2.1581 14 8 2.7244 -2.4086 1.5062 15 8 3.3833 -1.1293 3.5499 16 6 5.1762 -1.7652 1.8413 17 6 5.6693 -2.5152 0.7687 18 7 6.9728 -2.5645 0.8694 19 7 7.3504 -1.8541 2.0161 20 6 8.7199 -1.6640 2.5004 21 6 9.3812 -3.0066 2.6768 22 8 8.7713 -4.0184 2.4234 23 8 10.6481 -3.0785 3.1143 24 6 6.2301 -1.3707 2.5928 25 1 -1.0500 0.0002 0.0000 26 1 3.0090 0.8830 -0.5272 27 1 3.0098 -0.8968 -0.5003 28 1 1.5650 3.1936 0.1679 29 1 5.0766 -2.9714 -0.0105 30 1 8.6978 -1.1415 3.4568 31 1 9.2825 -1.0741 1.7769 32 1 11.0295 -3.9618 3.2120 33 1 6.1831 -0.7760 3.4931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302323204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:21 Heat of formation + Delta-G solvation = 5.330823 kcal Electronic energy + Delta-G solvation = -23753.037158 eV Core-core repulsion = 19911.208976 eV Total energy + Delta-G solvation = -3841.828182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.32703 -40.24958 -36.51605 -36.24457 -36.04125 -34.80150 -33.67259 -31.68690 -30.92116 -30.23908 -28.26159 -26.37443 -23.71845 -22.95623 -21.67328 -20.74879 -18.59613 -18.52507 -17.96075 -17.70718 -17.06932 -16.65175 -16.37931 -16.21064 -15.20662 -14.74322 -14.61940 -14.33781 -14.28260 -13.43473 -13.35572 -13.17061 -13.09105 -12.73248 -12.35444 -11.90230 -11.65231 -11.34924 -11.26444 -11.11154 -11.00277 -10.92483 -10.87245 -10.43294 -10.22450 -10.12327 -9.54996 -9.48491 -9.09061 -8.91611 -8.64978 -8.08253 -6.18311 -3.76132 1.40415 1.60631 1.77978 2.14745 2.61362 2.74468 3.21244 3.30089 3.31299 3.94462 4.22094 4.25246 4.41209 4.62713 4.64239 4.64894 4.77866 4.80232 5.00300 5.11116 5.33954 5.63652 5.74948 5.99325 6.06847 6.23294 6.57647 6.76388 6.82858 7.11108 7.36213 7.46281 7.56976 7.62068 8.40927 8.98214 9.14067 9.34016 10.79816 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.004709 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.792774 B = 5945.047716 C = 6944.307766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.096 4.096 3 C 0.255 3.745 4 N -0.844 5.844 5 C -0.330 4.330 6 H 0.109 0.891 7 C 0.046 3.954 8 N -0.852 5.852 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 S 2.695 3.305 14 O -0.976 6.976 15 O -0.970 6.970 16 C -0.796 4.796 17 C 0.131 3.869 18 N -0.281 5.281 19 N -0.373 5.373 20 C 0.143 3.857 21 C 0.463 3.537 22 O -0.482 6.482 23 O -0.516 6.516 24 C 0.179 3.821 25 H 0.196 0.804 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.265 0.735 29 H 0.196 0.804 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.416 0.584 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 -4.591 1.686 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.098 4.098 3 C 0.130 3.870 4 N -0.676 5.676 5 C -0.460 4.460 6 H 0.127 0.873 7 C -0.160 4.160 8 N -0.489 5.489 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.196 1.196 13 S 2.782 3.218 14 O -0.966 6.966 15 O -0.960 6.960 16 C -0.889 4.889 17 C -0.059 4.059 18 N -0.099 5.099 19 N -0.154 5.154 20 C 0.019 3.981 21 C 0.302 3.698 22 O -0.366 6.366 23 O -0.329 6.329 24 C 0.030 3.970 25 H 0.213 0.787 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.213 0.787 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.275 0.725 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 14.273 -5.346 1.504 15.316 hybrid contribution 0.406 0.927 0.318 1.061 sum 14.679 -4.419 1.822 15.437 Atomic orbital electron populations 1.24143 0.95289 1.07517 1.02000 1.22995 0.94242 0.94396 0.98199 1.17777 0.84673 1.00811 0.83788 1.53045 1.72763 1.20318 1.21455 1.19135 1.40966 0.82635 1.03294 0.87335 1.24975 0.95200 0.98479 0.97353 1.70230 1.20553 1.27956 1.30203 0.86385 0.79526 0.82663 0.78834 1.20699 1.21311 1.19632 1.01969 0.73830 0.72450 0.73541 1.93492 1.68412 1.57925 1.76803 1.93462 1.86527 1.85085 1.30946 1.32661 1.27157 1.20441 1.08671 1.23545 0.91260 0.94559 0.96579 1.77413 1.14662 1.15960 1.01831 1.48564 1.04828 1.41548 1.20477 1.20966 0.80229 0.92662 1.04224 1.23316 0.80128 0.92318 0.74077 1.90844 1.64157 1.37114 1.44519 1.84463 1.28873 1.40272 1.79262 1.22462 0.84028 0.93578 0.96927 0.78688 0.87883 0.92031 0.92372 0.78710 0.83976 0.85051 0.72457 0.79036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.12 19.25 29.55 0.57 -5.55 16 2 C -0.10 -2.30 11.20 -37.12 -0.42 -2.72 16 3 C 0.26 5.74 5.10 -6.83 -0.03 5.70 16 4 N -0.84 -19.66 2.88 -62.77 -0.18 -19.84 16 5 C -0.33 -8.17 9.36 -15.06 -0.14 -8.31 16 6 H 0.11 2.61 7.43 -52.49 -0.39 2.23 16 7 C 0.05 1.15 4.86 -17.43 -0.08 1.07 16 8 N -0.85 -21.92 9.10 55.49 0.50 -21.41 16 9 Si 0.90 19.16 29.63 -169.99 -5.04 14.12 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 S 2.70 58.16 5.75 -107.50 -0.62 57.54 16 14 O -0.98 -22.53 16.88 -57.17 -0.97 -23.49 16 15 O -0.97 -22.94 16.73 -57.17 -0.96 -23.90 16 16 C -0.80 -14.33 6.17 -40.02 -0.25 -14.58 16 17 C 0.13 2.23 11.81 -17.37 -0.21 2.03 16 18 N -0.28 -4.72 11.66 30.62 0.36 -4.37 16 19 N -0.37 -5.27 3.39 -62.55 -0.21 -5.48 16 20 C 0.14 1.25 7.10 -5.19 -0.04 1.21 16 21 C 0.46 4.70 8.36 36.01 0.30 5.00 16 22 O -0.48 -7.22 16.48 -18.75 -0.31 -7.53 16 23 O -0.52 -3.40 13.42 -39.24 -0.53 -3.93 16 24 C 0.18 2.73 11.19 -17.22 -0.19 2.53 16 25 H 0.20 3.65 7.80 -54.09 -0.42 3.23 16 26 H 0.10 2.36 6.52 -51.93 -0.34 2.02 16 27 H 0.06 1.19 7.68 -51.93 -0.40 0.79 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.20 2.85 8.06 -52.48 -0.42 2.43 16 30 H 0.14 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.42 1.21 9.10 45.56 0.41 1.62 16 33 H 0.19 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -37.03 320.81 -5.55 -42.58 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -1.96 Total: 4.48 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.49 Total: -13.62 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.47 Total: -51.10 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -2.76 Total: -58.84 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.04 Total: 14.12 kcal Atomic # 16 Polarization: 58.16 SS G_CDS: -0.62 Total: 57.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.03 -5.55 -42.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302323204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.914 kcal (2) G-P(sol) polarization free energy of solvation -37.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds