Wall clock time and date at job start Tue Mar 31 2020 04:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46915 * 269.13327 * 3 2 1 5 5 C 1.36933 * 120.00303 * 273.01493 * 4 3 2 6 6 H 1.07998 * 120.00200 * 187.48833 * 5 4 3 7 7 C 1.38817 * 119.99947 * 7.49060 * 5 4 3 8 8 N 1.31622 * 119.99910 * 27.06212 * 7 5 4 9 9 Si 1.86801 * 120.00041 * 207.06424 * 7 5 4 10 10 H 1.48500 * 109.47009 * 89.99935 * 9 7 5 11 11 H 1.48500 * 109.47116 * 209.99672 * 9 7 5 12 12 H 1.48497 * 109.47075 * 330.00120 * 9 7 5 13 13 S 1.65603 * 119.99908 * 93.01965 * 4 3 2 14 14 O 1.42099 * 106.40116 * 336.46099 * 13 4 3 15 15 O 1.42101 * 106.40259 * 203.53598 * 13 4 3 16 16 C 1.76203 * 107.21770 * 89.99809 * 13 4 3 17 17 C 1.39866 * 126.03960 * 270.00201 * 16 13 4 18 18 N 1.30837 * 108.20278 * 179.74299 * 17 16 13 19 19 N 1.40081 * 108.20715 * 0.40069 * 18 17 16 20 20 C 1.46499 * 126.04339 * 179.85738 * 19 18 17 21 21 C 1.50701 * 109.46915 * 304.68919 * 20 19 18 22 22 O 1.20827 * 119.99697 * 0.02562 * 21 20 19 23 23 O 1.34224 * 120.00255 * 179.97438 * 21 20 19 24 24 C 1.34953 * 107.92038 * 359.59090 * 19 18 17 25 25 H 4.40634 * 5.51486 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47284 * 149.13858 * 3 2 1 27 27 H 1.08996 * 109.47383 * 29.13347 * 3 2 1 28 28 H 0.97003 * 120.00064 * 180.02562 * 8 7 5 29 29 H 1.08003 * 125.89933 * 359.97438 * 17 16 13 30 30 H 1.08998 * 109.47165 * 184.69059 * 20 19 18 31 31 H 1.08997 * 109.46871 * 64.68756 * 20 19 18 32 32 H 0.96703 * 117.00483 * 179.97438 * 23 21 20 33 33 H 1.08008 * 126.12413 * 180.21743 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0218 1.3811 5 6 3.3031 1.2160 2.0295 6 1 3.7754 1.2413 3.0004 7 6 2.8673 2.3942 1.4387 8 7 1.8693 2.3703 0.5810 9 14 3.6974 4.0135 1.8612 10 1 4.8239 4.2516 0.9235 11 1 2.7134 5.1195 1.7438 12 1 4.2146 3.9565 3.2520 13 16 3.4821 -1.3987 2.1581 14 8 2.7244 -2.4086 1.5062 15 8 3.3833 -1.1293 3.5499 16 6 5.1762 -1.7652 1.8413 17 6 5.6693 -2.5152 0.7687 18 7 6.9728 -2.5645 0.8694 19 7 7.3504 -1.8541 2.0161 20 6 8.7199 -1.6640 2.5004 21 6 9.3812 -3.0066 2.6768 22 8 8.7713 -4.0184 2.4234 23 8 10.6481 -3.0785 3.1143 24 6 6.2301 -1.3707 2.5928 25 1 -1.0500 0.0002 0.0000 26 1 3.0090 0.8830 -0.5272 27 1 3.0098 -0.8968 -0.5003 28 1 1.5650 3.1936 0.1679 29 1 5.0766 -2.9714 -0.0105 30 1 8.6978 -1.1415 3.4568 31 1 9.2825 -1.0741 1.7769 32 1 11.0295 -3.9618 3.2120 33 1 6.1831 -0.7760 3.4931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302323204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:20 Heat of formation + Delta-G solvation = -23.899033 kcal Electronic energy + Delta-G solvation = -23754.304660 eV Core-core repulsion = 19911.208976 eV Total energy + Delta-G solvation = -3843.095684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.45699 -41.09873 -38.02801 -37.78846 -37.23471 -36.60275 -34.68014 -33.48223 -32.70485 -31.50470 -29.25998 -28.14348 -25.51855 -23.88268 -22.99228 -21.77787 -20.22643 -19.61174 -19.30321 -19.16783 -18.35815 -17.94674 -17.76194 -17.21570 -16.56627 -16.31392 -16.12131 -15.76616 -15.42930 -15.14769 -14.88982 -14.18788 -14.14903 -14.00092 -13.75949 -13.41384 -13.06559 -12.97318 -12.71203 -12.66571 -12.61253 -12.59001 -12.17795 -11.94609 -11.87709 -11.69294 -11.25846 -10.85642 -10.65248 -10.43099 -10.28482 -9.88623 -7.98585 -5.64028 -0.23410 0.46376 1.04114 1.17105 1.27869 1.54813 1.57621 1.66251 1.99012 2.22453 2.49593 2.61381 2.92867 3.04966 3.28479 3.34993 3.64807 3.83164 4.00028 4.08708 4.09513 4.15957 4.44004 4.52213 4.59903 5.07744 5.29636 5.38283 5.48677 5.62915 5.69774 5.79670 6.32324 6.58238 6.84804 7.19307 7.35278 7.51062 8.99164 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.004709 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.792774 B = 5945.047716 C = 6944.307766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.135 4.135 3 C 0.256 3.744 4 N -0.864 5.864 5 C -0.345 4.345 6 H 0.110 0.890 7 C 0.001 3.999 8 N -0.886 5.886 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.298 1.298 12 H -0.263 1.263 13 S 2.721 3.279 14 O -1.001 7.001 15 O -0.998 6.998 16 C -0.815 4.815 17 C 0.122 3.878 18 N -0.297 5.297 19 N -0.363 5.363 20 C 0.128 3.872 21 C 0.472 3.528 22 O -0.539 6.539 23 O -0.500 6.500 24 C 0.192 3.808 25 H 0.226 0.774 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.260 0.740 29 H 0.208 0.792 30 H 0.191 0.809 31 H 0.163 0.837 32 H 0.433 0.567 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.529 -4.124 2.637 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.138 4.138 3 C 0.130 3.870 4 N -0.696 5.696 5 C -0.473 4.473 6 H 0.127 0.873 7 C -0.202 4.202 8 N -0.525 5.525 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.224 1.224 12 H -0.187 1.187 13 S 2.813 3.187 14 O -0.992 6.992 15 O -0.988 6.988 16 C -0.915 4.915 17 C -0.068 4.068 18 N -0.116 5.116 19 N -0.142 5.142 20 C 0.007 3.993 21 C 0.313 3.687 22 O -0.428 6.428 23 O -0.314 6.314 24 C 0.041 3.959 25 H 0.243 0.757 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.224 0.776 30 H 0.208 0.792 31 H 0.180 0.820 32 H 0.296 0.704 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 16.900 -4.847 2.475 17.755 hybrid contribution -0.219 0.609 0.126 0.659 sum 16.681 -4.238 2.601 17.406 Atomic orbital electron populations 1.25030 0.96456 1.06693 1.01107 1.23767 0.95556 0.95265 0.99174 1.17882 0.84053 1.01439 0.83638 1.52975 1.75794 1.19668 1.21150 1.19349 1.40434 0.83137 1.04396 0.87282 1.25690 0.95502 1.01192 0.97832 1.70362 1.22135 1.28074 1.31906 0.85381 0.78185 0.78470 0.78981 1.19947 1.22442 1.18718 1.00373 0.74202 0.71699 0.72408 1.93455 1.69841 1.58840 1.77034 1.93422 1.87402 1.85415 1.32602 1.31746 1.24893 1.23661 1.11173 1.23799 0.91661 0.94579 0.96755 1.77366 1.14247 1.16621 1.03321 1.48831 1.06625 1.39654 1.19134 1.21677 0.77585 0.92616 1.07397 1.23515 0.80552 0.91993 0.72622 1.90845 1.65613 1.39012 1.47370 1.84426 1.27102 1.41762 1.78122 1.22938 0.83617 0.92375 0.96989 0.75685 0.88746 0.89690 0.92986 0.77583 0.79245 0.81968 0.70424 0.75723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.51 19.25 74.32 1.43 -11.08 16 2 C -0.13 -6.63 11.20 31.12 0.35 -6.28 16 3 C 0.26 11.71 5.10 84.57 0.43 12.14 16 4 N -0.86 -40.57 2.88 -352.52 -1.02 -41.58 16 5 C -0.34 -17.07 9.36 84.04 0.79 -16.29 16 6 H 0.11 5.22 7.43 -2.91 -0.02 5.20 16 7 C 0.00 0.03 4.86 84.86 0.41 0.44 16 8 N -0.89 -46.47 9.10 21.65 0.20 -46.28 16 9 Si 0.96 39.32 29.63 68.60 2.03 41.36 16 10 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.30 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 13 S 2.72 117.29 5.75 -56.49 -0.32 116.96 16 14 O -1.00 -46.69 16.88 -128.00 -2.16 -48.86 16 15 O -1.00 -47.01 16.73 -128.00 -2.14 -49.15 16 16 C -0.81 -28.31 6.17 21.99 0.14 -28.18 16 17 C 0.12 4.05 11.81 85.24 1.01 5.06 16 18 N -0.30 -9.47 11.66 -57.02 -0.66 -10.13 16 19 N -0.36 -9.09 3.39 -351.80 -1.19 -10.29 16 20 C 0.13 1.67 7.10 85.63 0.61 2.28 16 21 C 0.47 8.10 8.36 71.24 0.60 8.69 16 22 O -0.54 -15.28 16.48 21.96 0.36 -14.91 16 23 O -0.50 -4.78 13.42 -51.36 -0.69 -5.47 16 24 C 0.19 5.32 11.19 83.54 0.93 6.25 16 25 H 0.23 8.29 7.80 -4.42 -0.03 8.25 16 26 H 0.09 4.46 6.52 -2.39 -0.02 4.44 16 27 H 0.09 3.34 7.68 -2.39 -0.02 3.32 16 28 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.21 5.98 8.06 -2.91 -0.02 5.95 16 30 H 0.19 0.68 8.07 -2.39 -0.02 0.66 16 31 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.43 1.18 9.10 -74.06 -0.67 0.50 16 33 H 0.23 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -81.75 320.81 1.59 -80.16 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.50 Total: 15.15 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 6.69 Total: -26.96 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -2.68 Total: -108.28 kcal Atomic # 8 Polarization: -113.76 SS G_CDS: -4.63 Total: -118.39 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 16 Polarization: 117.29 SS G_CDS: -0.32 Total: 116.96 kcal Total: -81.75 1.59 -80.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302323204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.264 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds