Wall clock time and date at job start Tue Mar 31 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28676 * 126.01477 * 2 1 4 4 N 1.28467 * 110.94149 * 180.24551 * 3 2 1 5 5 C 1.33403 * 109.52117 * 359.74912 * 4 3 2 6 6 Br 1.89104 * 126.92077 * 179.97438 * 5 4 3 7 7 C 1.37195 * 126.01134 * 179.82043 * 2 1 3 8 8 C 1.46985 * 127.29895 * 0.04082 * 7 2 1 9 9 O 1.21675 * 120.00195 * 96.52423 * 8 7 2 10 10 N 1.34776 * 119.99990 * 276.52647 * 8 7 2 11 11 C 1.36863 * 120.00009 * 184.69252 * 10 8 7 12 12 H 1.07990 * 119.99947 * 344.88024 * 11 10 8 13 13 C 1.39043 * 119.99529 * 164.87654 * 11 10 8 14 14 N 1.31371 * 120.00567 * 331.75892 * 13 11 10 15 15 Si 1.86804 * 119.99728 * 151.75954 * 13 11 10 16 16 H 1.48499 * 109.47113 * 94.98097 * 15 13 11 17 17 H 1.48503 * 109.46932 * 214.98256 * 15 13 11 18 18 H 1.48507 * 109.46740 * 334.97754 * 15 13 11 19 19 C 1.46497 * 119.99795 * 4.69403 * 10 8 7 20 20 C 1.47199 * 109.47273 * 270.56920 * 19 10 8 21 21 N 4.88729 * 119.35443 * 124.27387 * 2 1 3 22 22 H 1.08997 * 109.46927 * 274.58163 * 1 2 3 23 23 H 1.08999 * 109.47018 * 34.58290 * 1 2 3 24 24 H 1.08998 * 109.47163 * 154.58300 * 1 2 3 25 25 H 0.96995 * 120.00152 * 180.02562 * 14 13 11 26 26 H 1.09003 * 109.47435 * 30.56843 * 19 10 8 27 27 H 1.09001 * 109.47001 * 150.56886 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0408 0.0000 4 7 3.4621 0.7067 -0.0051 5 6 3.5656 -0.6233 -0.0033 6 35 5.1609 -1.6386 -0.0096 7 6 2.2717 -1.1098 0.0035 8 6 1.8495 -2.5177 0.0071 9 8 1.7901 -3.1377 -1.0382 10 7 1.5283 -3.1219 1.1681 11 6 1.2282 -4.4572 1.1846 12 1 1.0089 -4.9727 0.2614 13 6 1.2060 -5.1498 2.3900 14 7 1.9618 -4.7543 3.3891 15 14 0.1012 -6.6429 2.5889 16 1 0.8782 -7.8754 2.3020 17 1 -0.4143 -6.6954 3.9807 18 1 -1.0389 -6.5447 1.6423 19 6 1.5002 -2.3494 2.4126 20 6 2.8325 -2.3773 3.0376 21 7 3.8608 -2.3989 3.5201 22 1 -0.3633 0.0821 1.0244 23 1 -0.3633 0.8461 -0.5833 24 1 -0.3633 -0.9282 -0.4411 25 1 1.9465 -5.2377 4.2298 26 1 1.2230 -1.3182 2.1939 27 1 0.7698 -2.7852 3.0943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309472672.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:55 Heat of formation + Delta-G solvation = 95.868707 kcal Electronic energy + Delta-G solvation = -18489.382498 eV Core-core repulsion = 15331.468597 eV Total energy + Delta-G solvation = -3157.913901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 312.992 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.42280 -40.59281 -37.70269 -36.20358 -35.94699 -34.07493 -33.29766 -31.22050 -29.38207 -29.03840 -27.25832 -24.52237 -23.30412 -21.37016 -19.98292 -19.03088 -18.26225 -18.07778 -17.43328 -16.84091 -16.05563 -15.88260 -15.22461 -14.85476 -14.81947 -14.43131 -13.93734 -13.85292 -13.50694 -13.37498 -13.17221 -12.91797 -12.62355 -12.50186 -12.36588 -12.30916 -12.04695 -11.49633 -11.29418 -11.18978 -10.91901 -10.25756 -10.12187 -8.54186 -6.04170 -0.02698 0.02471 0.91590 0.97220 1.33917 1.54441 1.63365 1.66716 1.96086 2.23301 2.33216 2.73004 2.87743 3.32546 3.40869 3.49034 3.77336 4.04453 4.19028 4.28701 4.51860 4.58505 4.60019 5.23879 5.43075 5.80068 6.20248 6.89150 7.00499 7.00834 7.11544 7.62416 8.48742 Molecular weight = 312.99amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.007232 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.052337 B = 3870.571618 C = 4485.093800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.257 5.257 3 N -0.060 5.060 4 N -0.262 5.262 5 C -0.012 4.012 6 Br 0.045 6.955 7 C 0.001 3.999 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.408 5.408 11 C -0.348 4.348 12 H 0.100 0.900 13 C 0.020 3.980 14 N -0.867 5.867 15 Si 0.989 3.011 16 H -0.287 1.287 17 H -0.269 1.269 18 H -0.257 1.257 19 C 0.223 3.777 20 C 0.241 3.759 21 N -0.477 5.477 22 H 0.133 0.867 23 H 0.139 0.861 24 H 0.106 0.894 25 H 0.282 0.718 26 H 0.108 0.892 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 7.035 -1.655 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.054 5.054 3 N -0.040 5.040 4 N -0.128 5.128 5 C -0.232 4.232 6 Br 0.127 6.873 7 C -0.138 4.138 8 C 0.293 3.707 9 O -0.467 6.467 10 N -0.125 5.125 11 C -0.475 4.475 12 H 0.118 0.882 13 C -0.187 4.187 14 N -0.503 5.503 15 Si 0.812 3.188 16 H -0.213 1.213 17 H -0.194 1.194 18 H -0.181 1.181 19 C 0.096 3.904 20 C -0.077 4.077 21 N -0.157 5.157 22 H 0.151 0.849 23 H 0.157 0.843 24 H 0.125 0.875 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.164 7.832 -1.246 8.957 hybrid contribution -0.677 -1.730 0.004 1.858 sum -4.841 6.102 -1.242 7.888 Atomic orbital electron populations 1.23100 0.68266 1.08169 1.08541 1.48181 1.11125 1.02129 1.43989 1.77993 0.95607 1.11633 1.18815 1.74856 1.10449 1.10198 1.17277 1.23828 0.93058 0.92850 1.13414 1.96745 1.25868 1.66939 1.97798 1.22465 0.90588 0.91082 1.09642 1.16582 0.85174 0.83608 0.85332 1.90704 1.58003 1.65815 1.32218 1.43743 1.55522 1.09267 1.04004 1.19749 1.47435 0.84456 0.95861 0.88236 1.26038 0.96279 1.01666 0.94680 1.69958 1.31971 1.42602 1.05751 0.84992 0.78694 0.76776 0.78324 1.21285 1.19376 1.18072 1.18977 0.88084 0.96734 0.86585 1.29269 0.95066 0.90245 0.93143 1.80874 1.13017 1.11867 1.09954 0.84916 0.84271 0.87495 0.90744 0.87414 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 11.05 127.77 1.41 2.36 15 2 N -0.26 -7.55 3.48 -355.87 -1.24 -8.79 15 3 N -0.06 -1.93 13.12 37.02 0.49 -1.45 15 4 N -0.26 -9.89 12.34 -52.70 -0.65 -10.54 15 5 C -0.01 -0.49 7.84 84.45 0.66 0.17 15 6 Br 0.05 1.78 33.97 -20.37 -0.69 1.08 15 7 C 0.00 0.05 5.03 40.60 0.20 0.26 15 8 C 0.51 21.82 6.81 86.54 0.59 22.41 15 9 O -0.58 -29.28 16.73 -4.27 -0.07 -29.35 15 10 N -0.41 -17.28 2.58 -649.65 -1.68 -18.96 15 11 C -0.35 -16.12 9.32 84.10 0.78 -15.34 15 12 H 0.10 4.94 7.38 -2.92 -0.02 4.92 15 13 C 0.02 0.86 4.71 84.95 0.40 1.26 15 14 N -0.87 -39.51 9.56 21.68 0.21 -39.30 15 15 Si 0.99 35.08 29.64 68.60 2.03 37.11 15 16 H -0.29 -10.71 7.11 99.48 0.71 -10.00 15 17 H -0.27 -9.08 7.11 99.48 0.71 -8.37 15 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 19 C 0.22 8.05 4.94 84.57 0.42 8.47 15 20 C 0.24 10.30 13.17 89.44 1.18 11.48 15 21 N -0.48 -22.21 18.54 20.01 0.37 -21.84 15 22 H 0.13 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.14 1.44 8.14 -2.39 -0.02 1.42 15 24 H 0.11 1.88 7.77 -2.39 -0.02 1.86 15 25 H 0.28 12.32 8.31 -92.71 -0.77 11.55 15 26 H 0.11 3.09 6.52 -2.39 -0.02 3.07 15 27 H 0.14 4.63 6.84 -2.39 -0.02 4.61 15 Total: -1.00 -64.31 277.25 5.66 -58.65 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.24 Total: 2.32 kcal Atomic # 6 Polarization: 25.41 SS G_CDS: 5.65 Total: 31.06 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -2.50 Total: -100.88 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.07 Total: -29.35 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 35 Polarization: 1.78 SS G_CDS: -0.69 Total: 1.08 kcal Total: -64.31 5.66 -58.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309472672.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.521 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds