Wall clock time and date at job start Tue Mar 31 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34946 * 126.03543 * 2 1 4 4 C 1.35322 * 107.74540 * 179.84091 * 3 2 1 5 5 S 1.76191 * 126.03971 * 180.15964 * 4 3 2 6 6 O 1.42101 * 106.40615 * 358.08123 * 5 4 3 7 7 O 1.42099 * 106.40203 * 131.00004 * 5 4 3 8 8 N 1.65602 * 107.21946 * 244.54080 * 5 4 3 9 9 C 1.46500 * 119.99804 * 64.53611 * 8 5 4 10 10 C 1.50700 * 109.46781 * 165.37025 * 9 8 5 11 11 H 1.07998 * 120.00262 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99718 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99770 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46994 * 89.99923 * 14 12 10 16 16 H 1.48497 * 109.47205 * 209.99775 * 14 12 10 17 17 H 1.48505 * 109.46871 * 330.00037 * 14 12 10 18 18 C 1.39869 * 107.91872 * 0.42178 * 4 3 2 19 19 C 1.50693 * 125.90140 * 179.71795 * 18 4 3 20 20 F 1.39892 * 109.47543 * 183.87882 * 19 18 4 21 21 F 1.39903 * 109.46996 * 303.88168 * 19 18 4 22 22 F 1.39900 * 109.47147 * 63.87727 * 19 18 4 23 23 N 1.30840 * 108.20230 * 359.73830 * 18 4 3 24 24 H 1.09001 * 109.46933 * 269.71563 * 1 2 3 25 25 H 1.09000 * 109.47242 * 29.71604 * 1 2 3 26 26 H 1.08997 * 109.47054 * 149.71595 * 1 2 3 27 27 H 1.07997 * 126.12531 * 359.97438 * 3 2 1 28 28 H 0.96997 * 119.99610 * 244.53431 * 8 5 4 29 29 H 1.08996 * 109.47052 * 285.37166 * 9 8 5 30 30 H 1.08998 * 109.46971 * 45.37172 * 9 8 5 31 31 H 0.97001 * 119.99602 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6666 0.0036 5 16 4.9751 1.6940 0.0091 6 8 4.5069 3.0348 -0.0367 7 8 5.8194 1.2004 1.0400 8 7 5.7743 1.4289 -1.4169 9 6 5.1439 1.7923 -2.6884 10 6 6.1815 1.7930 -3.7813 11 1 7.2077 1.5470 -3.5518 12 6 5.8206 2.1078 -5.0743 13 7 4.5708 2.4070 -5.3538 14 14 7.1068 2.1095 -6.4289 15 1 7.1812 0.7592 -7.0424 16 1 6.7323 3.1043 -7.4659 17 1 8.4293 2.4662 -5.8553 18 6 3.5347 -0.7321 -0.0040 19 6 4.7497 -1.6236 -0.0092 20 9 4.3472 -2.9599 -0.1055 21 9 5.5602 -1.3007 -1.1028 22 9 5.4696 -1.4376 1.1758 23 7 2.2892 -1.1327 -0.0061 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8874 -0.5182 27 1 1.9281 2.1193 -0.0004 28 1 6.6598 1.0331 -1.4102 29 1 4.3648 1.0686 -2.9275 30 1 4.7036 2.7859 -2.6047 31 1 4.3168 2.6281 -6.2635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338972017.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:09 Heat of formation + Delta-G solvation = -139.121104 kcal Electronic energy + Delta-G solvation = -25180.011348 eV Core-core repulsion = 20790.062519 eV Total energy + Delta-G solvation = -4389.948828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.03256 -47.56653 -47.47944 -41.66690 -36.66629 -35.33717 -34.61223 -34.07239 -32.12882 -30.90270 -28.62632 -26.71597 -25.44972 -22.49296 -22.22240 -21.29110 -19.25695 -18.43630 -18.25372 -18.13410 -17.34799 -16.90022 -16.05647 -15.75686 -15.62449 -15.34424 -14.60213 -14.39992 -14.35200 -13.92369 -13.88427 -13.62143 -13.60617 -13.45118 -13.30596 -13.18813 -12.58291 -12.33672 -12.10538 -11.86639 -11.78308 -11.58249 -11.49560 -10.93752 -10.79415 -10.71381 -10.10967 -10.04293 -9.48609 -9.40696 -8.89892 -8.21637 -6.16686 -4.19998 0.93509 1.27005 1.64154 1.76195 2.72414 3.27314 3.33504 3.37098 3.56139 3.68578 3.81510 4.19834 4.36536 4.36757 4.44634 4.46248 4.75512 4.81752 5.04706 5.20034 5.20895 5.39727 5.63705 6.40994 6.46906 6.88104 7.30390 7.36184 7.81829 7.83410 8.20526 8.84217 9.44646 10.93921 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.005575 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.299641 B = 5021.023406 C = 5261.534265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.352 5.352 3 C 0.187 3.813 4 C -0.773 4.773 5 S 2.707 3.293 6 O -0.962 6.962 7 O -0.966 6.966 8 N -1.097 6.097 9 C 0.250 3.750 10 C -0.524 4.524 11 H 0.067 0.933 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.069 3.931 19 C 0.539 3.461 20 F -0.166 7.166 21 F -0.149 7.149 22 F -0.148 7.148 23 N -0.235 5.235 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.207 0.793 28 H 0.413 0.587 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -5.326 10.759 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.131 5.131 3 C 0.037 3.963 4 C -0.868 4.868 5 S 2.790 3.210 6 O -0.952 6.952 7 O -0.955 6.955 8 N -0.860 5.860 9 C 0.127 3.873 10 C -0.564 4.564 11 H 0.085 0.915 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.731 3.269 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.102 4.102 19 C 0.483 3.517 20 F -0.148 7.148 21 F -0.130 7.130 22 F -0.129 7.129 23 N -0.056 5.056 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.224 0.776 28 H 0.248 0.752 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.262 -5.699 11.267 15.659 hybrid contribution 0.880 -0.169 -1.229 1.521 sum -8.382 -5.867 10.038 14.333 Atomic orbital electron populations 1.22201 0.72427 1.05935 1.04423 1.49016 1.07560 1.03324 1.53216 1.22607 0.88282 0.94575 0.90868 1.31826 1.18772 1.06419 1.29748 1.01514 0.72718 0.73738 0.73037 1.93555 1.82211 1.32442 1.86943 1.93584 1.64795 1.81604 1.55553 1.55420 1.28732 1.79271 1.22610 1.19037 0.93900 0.95695 0.78678 1.21203 0.95193 1.47803 0.92209 0.91469 1.24960 0.95683 0.94874 0.98701 1.69935 1.16502 1.46283 1.20433 0.86414 0.81513 0.77835 0.81182 1.20552 1.21119 1.19620 1.21498 0.93376 0.92186 1.03188 1.17074 0.81415 0.77807 0.75443 1.93223 1.90570 1.35053 1.95917 1.93367 1.73750 1.92225 1.53655 1.93351 1.78578 1.94827 1.46179 1.77297 0.99767 1.07997 1.20531 0.89563 0.88013 0.88300 0.77614 0.75219 0.96316 0.94391 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.47 59.85 0.69 1.28 16 2 N -0.35 -4.40 4.01 -68.16 -0.27 -4.68 16 3 C 0.19 2.53 11.12 -17.22 -0.19 2.34 16 4 C -0.77 -13.00 6.11 -40.01 -0.24 -13.24 16 5 S 2.71 50.87 5.53 -107.50 -0.59 50.28 16 6 O -0.96 -19.67 17.23 -57.17 -0.99 -20.65 16 7 O -0.97 -19.01 16.44 -57.17 -0.94 -19.95 16 8 N -1.10 -22.46 4.78 -11.66 -0.06 -22.51 16 9 C 0.25 6.11 5.97 -5.19 -0.03 6.08 16 10 C -0.52 -13.96 9.27 -34.44 -0.32 -14.28 16 11 H 0.07 1.71 7.65 -52.49 -0.40 1.31 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 14 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.07 1.17 6.50 -82.41 -0.54 0.64 16 19 C 0.54 9.13 3.21 36.00 0.12 9.24 16 20 F -0.17 -2.65 17.14 2.25 0.04 -2.61 16 21 F -0.15 -2.64 15.84 2.25 0.04 -2.61 16 22 F -0.15 -2.52 15.78 2.25 0.04 -2.48 16 23 N -0.23 -3.70 12.35 33.67 0.42 -3.28 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.21 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.41 7.86 8.40 -34.47 -0.29 7.57 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -33.88 305.12 -4.97 -38.85 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -2.34 Total: 0.14 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.62 Total: -6.39 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.82 Total: -54.95 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.93 Total: -40.60 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.70 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -0.59 Total: 50.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.88 -4.97 -38.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338972017.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.270 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds