Wall clock time and date at job start Tue Mar 31 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34946 * 126.03543 * 2 1 4 4 C 1.35322 * 107.74540 * 179.84091 * 3 2 1 5 5 S 1.76191 * 126.03971 * 180.15964 * 4 3 2 6 6 O 1.42101 * 106.40615 * 358.08123 * 5 4 3 7 7 O 1.42099 * 106.40203 * 131.00004 * 5 4 3 8 8 N 1.65602 * 107.21946 * 244.54080 * 5 4 3 9 9 C 1.46500 * 119.99804 * 64.53611 * 8 5 4 10 10 C 1.50700 * 109.46781 * 165.37025 * 9 8 5 11 11 H 1.07998 * 120.00262 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99718 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99770 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46994 * 89.99923 * 14 12 10 16 16 H 1.48497 * 109.47205 * 209.99775 * 14 12 10 17 17 H 1.48505 * 109.46871 * 330.00037 * 14 12 10 18 18 C 1.39869 * 107.91872 * 0.42178 * 4 3 2 19 19 C 1.50693 * 125.90140 * 179.71795 * 18 4 3 20 20 F 1.39892 * 109.47543 * 183.87882 * 19 18 4 21 21 F 1.39903 * 109.46996 * 303.88168 * 19 18 4 22 22 F 1.39900 * 109.47147 * 63.87727 * 19 18 4 23 23 N 1.30840 * 108.20230 * 359.73830 * 18 4 3 24 24 H 1.09001 * 109.46933 * 269.71563 * 1 2 3 25 25 H 1.09000 * 109.47242 * 29.71604 * 1 2 3 26 26 H 1.08997 * 109.47054 * 149.71595 * 1 2 3 27 27 H 1.07997 * 126.12531 * 359.97438 * 3 2 1 28 28 H 0.96997 * 119.99610 * 244.53431 * 8 5 4 29 29 H 1.08996 * 109.47052 * 285.37166 * 9 8 5 30 30 H 1.08998 * 109.46971 * 45.37172 * 9 8 5 31 31 H 0.97001 * 119.99602 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6666 0.0036 5 16 4.9751 1.6940 0.0091 6 8 4.5069 3.0348 -0.0367 7 8 5.8194 1.2004 1.0400 8 7 5.7743 1.4289 -1.4169 9 6 5.1439 1.7923 -2.6884 10 6 6.1815 1.7930 -3.7813 11 1 7.2077 1.5470 -3.5518 12 6 5.8206 2.1078 -5.0743 13 7 4.5708 2.4070 -5.3538 14 14 7.1068 2.1095 -6.4289 15 1 7.1812 0.7592 -7.0424 16 1 6.7323 3.1043 -7.4659 17 1 8.4293 2.4662 -5.8553 18 6 3.5347 -0.7321 -0.0040 19 6 4.7497 -1.6236 -0.0092 20 9 4.3472 -2.9599 -0.1055 21 9 5.5602 -1.3007 -1.1028 22 9 5.4696 -1.4376 1.1758 23 7 2.2892 -1.1327 -0.0061 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8874 -0.5182 27 1 1.9281 2.1193 -0.0004 28 1 6.6598 1.0331 -1.4102 29 1 4.3648 1.0686 -2.9275 30 1 4.7036 2.7859 -2.6047 31 1 4.3168 2.6281 -6.2635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338972017.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:09 Heat of formation + Delta-G solvation = -165.329583 kcal Electronic energy + Delta-G solvation = -25181.147833 eV Core-core repulsion = 20790.062519 eV Total energy + Delta-G solvation = -4391.085313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.36061 -48.88636 -48.82368 -42.78110 -38.22813 -36.90468 -36.43986 -35.06090 -34.08726 -32.05027 -29.62544 -28.68472 -26.52191 -24.45112 -23.35762 -22.49452 -20.65804 -19.81505 -19.64202 -19.42550 -19.03216 -18.14621 -17.69088 -17.11414 -16.84525 -16.76823 -16.30484 -15.72585 -15.67770 -15.29708 -15.20446 -14.99697 -14.95564 -14.91562 -14.51814 -14.05760 -13.97131 -13.91188 -13.61108 -13.53517 -13.23651 -13.08045 -12.90373 -12.74008 -12.50753 -12.14009 -12.04316 -11.37435 -11.10870 -10.83893 -10.60722 -10.09182 -8.21924 -6.31913 -0.53384 0.16290 0.39681 0.71106 1.47119 1.47398 1.55944 1.58588 2.14974 2.32992 2.45299 2.54857 2.75984 3.09333 3.13788 3.17285 3.65024 3.70049 4.07307 4.29560 4.34854 4.49374 4.63224 4.65258 5.32021 5.36757 5.49837 5.75581 5.78427 6.02151 6.33926 6.81390 7.36883 8.89222 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.005575 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.299641 B = 5021.023406 C = 5261.534265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.338 5.338 3 C 0.198 3.802 4 C -0.800 4.800 5 S 2.725 3.275 6 O -0.981 6.981 7 O -0.977 6.977 8 N -1.100 6.100 9 C 0.265 3.735 10 C -0.545 4.545 11 H 0.073 0.927 12 C 0.010 3.990 13 N -0.925 5.925 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.264 1.264 18 C 0.051 3.949 19 C 0.537 3.463 20 F -0.162 7.162 21 F -0.158 7.158 22 F -0.151 7.151 23 N -0.248 5.248 24 H 0.113 0.887 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.243 0.757 28 H 0.417 0.583 29 H 0.006 0.994 30 H 0.019 0.981 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -5.268 10.726 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.117 5.117 3 C 0.046 3.954 4 C -0.899 4.899 5 S 2.812 3.188 6 O -0.971 6.971 7 O -0.967 6.967 8 N -0.862 5.862 9 C 0.141 3.859 10 C -0.584 4.584 11 H 0.091 0.909 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.793 3.207 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.188 1.188 18 C -0.119 4.119 19 C 0.481 3.519 20 F -0.143 7.143 21 F -0.139 7.139 22 F -0.133 7.133 23 N -0.071 5.071 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.124 0.876 27 H 0.259 0.741 28 H 0.253 0.747 29 H 0.024 0.976 30 H 0.037 0.963 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.231 -5.644 11.248 16.218 hybrid contribution 1.025 -0.223 -1.140 1.549 sum -9.206 -5.867 10.108 14.878 Atomic orbital electron populations 1.22810 0.68850 1.07844 1.06817 1.49483 1.09255 1.02085 1.50833 1.23171 0.87299 0.96222 0.88753 1.31442 1.19243 1.06128 1.33039 1.00676 0.72783 0.73281 0.72086 1.93522 1.82540 1.34033 1.87000 1.93565 1.65860 1.81796 1.55441 1.55293 1.29427 1.79535 1.21973 1.18605 0.93291 0.94175 0.79826 1.21620 0.95965 1.47666 0.93172 0.90920 1.25815 0.97645 0.94447 1.01075 1.70037 1.18234 1.47073 1.21092 0.85394 0.79159 0.77952 0.78193 1.19987 1.20756 1.18837 1.21473 0.93748 0.92202 1.04517 1.17147 0.81564 0.78157 0.75079 1.93223 1.90495 1.34725 1.95876 1.93341 1.74122 1.92341 1.54115 1.93336 1.78751 1.94883 1.46294 1.77222 0.99537 1.09801 1.20492 0.86868 0.84942 0.87640 0.74055 0.74732 0.97603 0.96325 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 11.47 127.77 1.47 2.18 16 2 N -0.34 -7.59 4.01 -369.55 -1.48 -9.07 16 3 C 0.20 4.91 11.12 83.54 0.93 5.84 16 4 C -0.80 -26.29 6.11 21.99 0.13 -26.15 16 5 S 2.72 102.31 5.53 -56.49 -0.31 101.99 16 6 O -0.98 -39.84 17.23 -128.00 -2.21 -42.05 16 7 O -0.98 -38.49 16.44 -128.00 -2.10 -40.60 16 8 N -1.10 -45.57 4.78 -190.79 -0.91 -46.49 16 9 C 0.27 13.16 5.97 85.63 0.51 13.67 16 10 C -0.54 -29.10 9.27 25.60 0.24 -28.86 16 11 H 0.07 3.70 7.65 -2.91 -0.02 3.67 16 12 C 0.01 0.54 5.46 84.66 0.46 1.00 16 13 N -0.93 -52.34 13.29 21.45 0.28 -52.06 16 14 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 C 0.05 1.72 6.50 43.10 0.28 2.00 16 19 C 0.54 18.25 3.21 71.23 0.23 18.47 16 20 F -0.16 -5.14 17.14 44.97 0.77 -4.37 16 21 F -0.16 -5.70 15.84 44.97 0.71 -4.99 16 22 F -0.15 -5.18 15.78 44.97 0.71 -4.47 16 23 N -0.25 -7.50 12.35 -47.39 -0.59 -8.09 16 24 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.42 16.15 8.40 -96.75 -0.81 15.33 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.02 1.00 7.77 -2.39 -0.02 0.98 16 31 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -72.37 305.12 1.54 -70.82 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.40 Total: 6.91 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.25 Total: -11.84 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -2.70 Total: -115.71 kcal Atomic # 8 Polarization: -78.33 SS G_CDS: -4.31 Total: -82.64 kcal Atomic # 9 Polarization: -16.02 SS G_CDS: 2.19 Total: -13.83 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 102.31 SS G_CDS: -0.31 Total: 101.99 kcal Total: -72.37 1.54 -70.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338972017.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.505 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds