Wall clock time and date at job start Tue Mar 31 2020 04:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34898 * 116.99901 * 2 1 4 4 O 1.21618 * 119.99734 * 0.02562 * 3 2 1 5 5 C 1.46493 * 119.99913 * 179.97438 * 3 2 1 6 6 C 1.37991 * 126.26538 * 179.97438 * 5 3 2 7 7 C 1.39790 * 106.97226 * 180.02562 * 6 5 3 8 8 S 1.76206 * 126.07940 * 180.02562 * 7 6 5 9 9 O 1.42104 * 106.39867 * 336.45347 * 8 7 6 10 10 O 1.42103 * 106.39770 * 203.53927 * 8 7 6 11 11 N 1.65594 * 107.22102 * 89.99558 * 8 7 6 12 12 C 1.36934 * 120.00055 * 89.99849 * 11 8 7 13 13 H 1.08002 * 120.00028 * 353.36748 * 12 11 8 14 14 C 1.38810 * 120.00063 * 173.09067 * 12 11 8 15 15 N 1.31619 * 120.00200 * 336.12676 * 14 12 11 16 16 Si 1.86803 * 120.00137 * 156.12822 * 14 12 11 17 17 H 1.48506 * 109.46995 * 94.76807 * 16 14 12 18 18 H 1.48497 * 109.47422 * 214.76939 * 16 14 12 19 19 H 1.48504 * 109.46977 * 334.77180 * 16 14 12 20 20 C 1.46501 * 119.99963 * 270.00363 * 11 8 7 21 21 C 1.47203 * 109.46682 * 266.62038 * 20 11 8 22 22 N 9.81005 * 134.92480 * 17.51006 * 2 1 3 23 23 C 1.35491 * 107.84365 * 0.26039 * 7 6 5 24 24 N 1.34963 * 108.97985 * 359.57368 * 23 7 6 25 25 H 0.96996 * 125.63262 * 180.14781 * 24 23 7 26 26 H 1.09003 * 109.47322 * 299.99655 * 1 2 3 27 27 H 1.09000 * 109.47342 * 60.00224 * 1 2 3 28 28 H 1.09003 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08006 * 126.50798 * 359.96936 * 6 5 3 30 30 H 0.96990 * 120.00202 * 180.02562 * 15 14 12 31 31 H 1.08992 * 109.47087 * 26.61669 * 20 11 8 32 32 H 1.09001 * 109.46978 * 146.62668 * 20 11 8 33 33 H 1.07994 * 125.50758 * 179.71641 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2219 0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2842 2.4324 0.0001 7 6 5.6259 2.0402 0.0004 8 16 7.0215 3.1160 0.0006 9 8 6.5763 4.3508 -0.5440 10 8 8.1023 2.3711 -0.5436 11 7 7.4094 3.4154 1.5824 12 6 8.2938 2.6000 2.2366 13 1 8.6560 1.7020 1.7581 14 6 8.7293 2.9304 3.5125 15 7 8.6994 4.1835 3.9142 16 14 9.3578 1.5967 4.6596 17 1 10.8368 1.5112 4.5559 18 1 8.9778 1.9260 6.0569 19 1 8.7586 0.2927 4.2778 20 6 6.8064 4.5526 2.2819 21 6 7.6941 5.7218 2.1739 22 7 8.3796 6.6240 2.0898 23 6 5.6626 0.6858 -0.0050 24 7 4.3987 0.2125 0.0010 25 1 4.1460 -0.7240 0.0011 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9108 3.4459 -0.0011 30 1 9.0040 4.4144 4.8056 31 1 5.8417 4.7861 1.8316 32 1 6.6652 4.2995 3.3327 33 1 6.5584 0.0826 -0.0105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351673155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:18 Heat of formation + Delta-G solvation = -61.063942 kcal Electronic energy + Delta-G solvation = -23701.767852 eV Core-core repulsion = 19857.060576 eV Total energy + Delta-G solvation = -3844.707275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.49579 -40.00421 -36.62265 -36.54708 -36.29198 -34.94080 -34.23707 -31.47706 -31.38181 -30.11575 -27.77022 -27.33746 -23.97400 -23.48700 -21.80351 -20.43830 -19.42035 -18.49676 -17.88273 -17.25174 -16.82777 -16.61808 -16.11950 -15.87968 -15.21705 -14.69075 -14.55448 -14.34643 -13.84118 -13.65607 -13.51047 -13.29793 -12.87801 -12.58652 -12.41381 -12.19022 -11.65211 -11.40222 -11.27821 -11.24307 -11.09671 -11.05385 -10.95620 -10.92012 -10.63117 -10.50809 -10.20406 -10.01993 -9.61323 -9.40424 -8.59186 -8.26141 -6.36009 -3.91948 1.09368 1.27602 2.14542 2.37676 2.92886 2.99283 3.17886 3.26533 3.27926 3.83319 4.18458 4.37028 4.51558 4.65847 4.71072 4.79871 4.80915 4.89743 4.97498 5.07545 5.20268 5.46085 5.47457 5.56732 5.90320 6.03410 6.05505 6.37236 6.58703 6.62345 7.02633 7.17511 7.51243 7.52830 8.27783 8.82360 9.09967 9.21248 10.69084 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.004634 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.392184 B = 6040.313424 C = 6581.104984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.540 3.460 4 O -0.497 6.497 5 C -0.066 4.066 6 C 0.001 3.999 7 C -0.751 4.751 8 S 2.696 3.304 9 O -0.974 6.974 10 O -0.964 6.964 11 N -0.847 5.847 12 C -0.328 4.328 13 H 0.114 0.886 14 C 0.045 3.955 15 N -0.876 5.876 16 Si 0.912 3.088 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.244 3.756 21 C 0.261 3.739 22 N -0.484 5.484 23 C 0.164 3.836 24 N -0.522 5.522 25 H 0.425 0.575 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.271 0.729 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 -12.328 -4.002 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.385 3.615 4 O -0.384 6.384 5 C -0.175 4.175 6 C -0.025 4.025 7 C -0.839 4.839 8 S 2.784 3.216 9 O -0.964 6.964 10 O -0.954 6.954 11 N -0.680 5.680 12 C -0.457 4.457 13 H 0.132 0.868 14 C -0.160 4.160 15 N -0.515 5.515 16 Si 0.739 3.261 17 H -0.207 1.207 18 H -0.209 1.209 19 H -0.196 1.196 20 C 0.114 3.886 21 C -0.058 4.058 22 N -0.165 5.165 23 C 0.020 3.980 24 N -0.116 5.116 25 H 0.264 0.736 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.183 0.817 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.976 -10.472 -4.725 17.331 hybrid contribution -0.677 -1.937 1.215 2.385 sum -13.654 -12.409 -3.510 18.781 Atomic orbital electron populations 1.23271 0.75588 1.03699 1.02884 1.86545 1.24021 1.32874 1.85011 1.19736 0.86830 0.81735 0.73195 1.90921 1.65327 1.35709 1.46475 1.19349 0.86462 0.88525 1.23165 1.21044 0.89772 0.97523 0.94143 1.32016 1.17286 1.08946 1.25698 1.01867 0.73242 0.73488 0.73051 1.93521 1.83357 1.42255 1.77283 1.93489 1.51225 1.73552 1.77116 1.53003 1.51063 1.33655 1.30235 1.19230 1.21840 1.05444 0.99214 0.86840 1.24975 0.97163 0.96122 0.97762 1.69884 1.46470 1.15294 1.19889 0.86181 0.78905 0.81297 0.79767 1.20686 1.20901 1.19555 1.18317 0.89408 0.79022 1.01901 1.29093 0.93340 0.92770 0.90562 1.80833 1.09734 1.14457 1.11478 1.21907 0.87502 0.93894 0.94716 1.42123 1.06012 1.09024 1.54446 0.73605 0.91600 0.91689 0.88042 0.81684 0.91800 0.90072 0.85521 0.78877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.37 -3.81 10.58 -41.03 -0.43 -4.24 16 3 C 0.54 7.07 7.93 34.06 0.27 7.34 16 4 O -0.50 -7.67 16.68 -19.36 -0.32 -7.99 16 5 C -0.07 -0.89 7.10 -82.00 -0.58 -1.47 16 6 C 0.00 0.01 10.46 -39.09 -0.41 -0.39 16 7 C -0.75 -11.91 6.18 -39.98 -0.25 -12.16 16 8 S 2.70 53.77 5.75 -107.50 -0.62 53.15 16 9 O -0.97 -21.17 16.88 -57.17 -0.96 -22.14 16 10 O -0.96 -21.15 16.72 -57.17 -0.96 -22.11 16 11 N -0.85 -18.34 2.88 -62.77 -0.18 -18.52 16 12 C -0.33 -7.60 9.39 -15.06 -0.14 -7.74 16 13 H 0.11 2.53 7.39 -52.49 -0.39 2.15 16 14 C 0.04 1.06 4.96 -17.43 -0.09 0.97 16 15 N -0.88 -21.81 8.88 55.49 0.49 -21.32 16 16 Si 0.91 18.59 29.62 -169.99 -5.03 13.55 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 C 0.24 5.04 5.10 -6.83 -0.03 5.00 16 21 C 0.26 6.31 13.33 -20.75 -0.28 6.03 16 22 N -0.48 -12.57 18.54 42.16 0.78 -11.79 16 23 C 0.16 2.08 11.61 -17.16 -0.20 1.88 16 24 N -0.52 -5.62 6.07 -9.53 -0.06 -5.68 16 25 H 0.43 3.01 8.96 -40.82 -0.37 2.64 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.17 2.38 8.06 -52.48 -0.42 1.96 16 30 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.08 1.37 7.67 -51.93 -0.40 0.97 16 32 H 0.13 2.59 6.39 -51.93 -0.33 2.26 16 33 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -33.60 319.79 -5.85 -39.44 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -2.73 Total: 2.01 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.64 Total: 0.81 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 1.04 Total: -57.31 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -2.68 Total: -56.48 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.62 Total: 53.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.60 -5.85 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351673155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.619 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds