Wall clock time and date at job start Tue Mar 31 2020 04:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00435 * 2 1 4 4 H 1.07998 * 120.00336 * 202.31186 * 3 2 1 5 5 C 1.38820 * 119.99456 * 22.31304 * 3 2 1 6 6 N 1.31614 * 120.00365 * 11.14634 * 5 3 2 7 7 Si 1.86807 * 119.99618 * 191.14935 * 5 3 2 8 8 H 1.48496 * 109.46913 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46687 * 119.99892 * 7 5 3 10 10 H 1.48499 * 109.46718 * 239.99922 * 7 5 3 11 11 S 1.65604 * 119.99982 * 179.97438 * 2 1 3 12 12 O 1.42096 * 106.40146 * 156.46193 * 11 2 1 13 13 O 1.42095 * 106.39804 * 23.54314 * 11 2 1 14 14 C 1.76198 * 107.21933 * 270.00248 * 11 2 1 15 15 C 1.39868 * 126.04100 * 90.02517 * 14 11 2 16 16 N 1.30832 * 108.20236 * 179.97438 * 15 14 11 17 17 N 1.40083 * 108.20928 * 359.97438 * 16 15 14 18 18 C 1.46502 * 126.04125 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.46754 * 304.97273 * 18 17 16 20 20 F 1.39899 * 109.47197 * 60.00329 * 19 18 17 21 21 F 1.39897 * 109.46770 * 179.97438 * 19 18 17 22 22 F 1.39893 * 109.47298 * 300.00282 * 19 18 17 23 23 C 1.34947 * 107.92087 * 0.02562 * 17 16 15 24 24 H 1.09004 * 109.46745 * 274.22480 * 1 2 3 25 25 H 1.09007 * 109.46634 * 34.21473 * 1 2 3 26 26 H 1.08994 * 109.47384 * 154.21725 * 1 2 3 27 27 H 0.96997 * 120.00471 * 179.97438 * 6 5 3 28 28 H 1.08007 * 125.89745 * 0.21500 * 15 14 11 29 29 H 1.08997 * 109.46912 * 64.97108 * 18 17 16 30 30 H 1.08996 * 109.46863 * 184.97283 * 18 17 16 31 31 H 1.08005 * 126.12825 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1691 1.2209 -0.3551 5 6 1.5336 2.3431 0.4565 6 7 0.3818 2.2698 1.0890 7 14 2.3394 4.0044 0.1729 8 1 3.6194 3.8157 -0.5560 9 1 1.4332 4.8631 -0.6312 10 1 2.6064 4.6547 1.4809 11 16 2.2930 -1.4342 0.0006 12 8 3.5759 -1.1570 -0.5439 13 8 1.4113 -2.4067 -0.5434 14 6 2.5537 -1.8852 1.6838 15 6 1.6963 -2.6617 2.4700 16 7 2.2279 -2.7804 3.6596 17 7 3.4425 -2.0826 3.6679 18 6 4.3590 -1.9610 4.8044 19 6 3.6035 -1.4001 6.0109 20 9 2.5554 -2.2635 6.3474 21 9 4.4784 -1.2845 7.0963 22 9 3.0856 -0.1402 5.6923 23 6 3.6193 -1.5423 2.4440 24 1 -0.3633 0.0757 1.0249 25 1 -0.3633 0.8499 -0.5779 26 1 -0.3634 -0.9253 -0.4470 27 1 -0.0486 3.0783 1.4082 28 1 0.7593 -3.0925 2.1492 29 1 4.7623 -2.9427 5.0526 30 1 5.1755 -1.2883 4.5422 31 1 4.4610 -0.9439 2.1277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358818310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:54 Heat of formation + Delta-G solvation = -155.265741 kcal Electronic energy + Delta-G solvation = -24752.748966 eV Core-core repulsion = 20362.100054 eV Total energy + Delta-G solvation = -4390.648912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.24662 -48.79447 -48.71527 -42.26727 -37.74969 -37.35622 -36.37663 -35.15734 -33.18292 -31.50365 -29.81535 -28.18216 -25.27851 -25.02784 -22.92811 -22.27123 -20.20840 -19.86294 -19.67742 -19.39490 -18.67337 -18.21119 -18.01970 -16.64278 -16.45229 -16.14387 -16.08194 -15.64811 -15.56766 -15.29593 -15.15329 -14.99320 -14.89103 -14.84839 -14.49311 -14.12816 -13.86270 -13.61450 -13.32769 -13.10013 -12.93962 -12.74594 -12.67217 -12.51049 -12.29011 -12.03025 -11.84442 -11.54252 -11.02471 -10.70126 -10.23728 -9.84291 -8.21815 -5.85742 -0.01157 0.47418 1.07901 1.32037 1.51700 1.55376 1.56931 1.67251 2.36294 2.52995 2.79536 2.82833 3.01829 3.05731 3.34493 3.46940 3.67074 3.91038 3.95667 4.04326 4.43737 4.63777 4.71121 5.13005 5.32049 5.34763 5.51384 5.65134 5.73169 6.29965 6.52754 6.98187 7.38807 8.76509 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.005759 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.769249 B = 4861.119725 C = 6025.704718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.837 5.837 3 C -0.294 4.294 4 H 0.110 0.890 5 C -0.002 4.002 6 N -0.879 5.879 7 Si 0.980 3.020 8 H -0.257 1.257 9 H -0.277 1.277 10 H -0.279 1.279 11 S 2.633 3.367 12 O -1.005 7.005 13 O -1.014 7.014 14 C -0.813 4.813 15 C 0.124 3.876 16 N -0.309 5.309 17 N -0.382 5.382 18 C 0.087 3.913 19 C 0.442 3.558 20 F -0.182 7.182 21 F -0.169 7.169 22 F -0.193 7.193 23 C 0.183 3.817 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.271 0.729 28 H 0.204 0.796 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.788 -4.218 8.729 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.664 5.664 3 C -0.435 4.435 4 H 0.127 0.873 5 C -0.209 4.209 6 N -0.519 5.519 7 Si 0.804 3.196 8 H -0.180 1.180 9 H -0.203 1.203 10 H -0.205 1.205 11 S 2.729 3.271 12 O -0.995 6.995 13 O -1.004 7.004 14 C -0.907 4.907 15 C -0.066 4.066 16 N -0.127 5.127 17 N -0.162 5.162 18 C -0.035 4.035 19 C 0.387 3.613 20 F -0.163 7.163 21 F -0.151 7.151 22 F -0.175 7.175 23 C 0.033 3.967 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.221 0.779 29 H 0.181 0.819 30 H 0.202 0.798 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.890 -5.279 9.474 13.412 hybrid contribution -0.221 1.291 0.313 1.346 sum 7.669 -3.989 9.787 13.058 Atomic orbital electron populations 1.21138 0.79147 0.99862 1.01117 1.53507 1.13346 1.18746 1.80834 1.19917 1.00784 0.84399 1.38384 0.87273 1.26274 0.96900 1.03181 0.94572 1.70193 1.16958 1.30253 1.34499 0.85051 0.79007 0.77501 0.78067 1.18046 1.20291 1.20503 1.06124 0.72521 0.72875 0.75539 1.93339 1.42214 1.85274 1.78689 1.93341 1.66255 1.61742 1.79110 1.32620 1.05935 1.21629 1.30543 1.23778 0.99122 0.94367 0.89299 1.77375 0.95560 1.18580 1.21210 1.48891 1.17365 1.40091 1.09883 1.23385 0.90493 1.09262 0.80401 1.20897 0.78725 0.75933 0.85721 1.93243 1.60052 1.69674 1.93338 1.93226 1.68510 1.95942 1.57381 1.93236 1.88094 1.43407 1.92750 1.22880 0.98320 0.92135 0.83328 0.94026 0.92015 0.92635 0.91920 0.77912 0.81866 0.79798 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.06 8.92 127.77 1.14 7.20 16 2 N -0.84 -39.55 3.31 -364.88 -1.21 -40.75 16 3 C -0.29 -14.37 9.45 84.03 0.79 -13.58 16 4 H 0.11 5.25 7.16 -2.91 -0.02 5.23 16 5 C 0.00 -0.11 5.13 84.86 0.44 0.33 16 6 N -0.88 -43.83 10.57 21.65 0.23 -43.60 16 7 Si 0.98 38.00 29.57 68.60 2.03 40.03 16 8 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 9 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 10 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 11 S 2.63 115.58 5.80 -56.49 -0.33 115.26 16 12 O -1.00 -47.09 16.64 -128.00 -2.13 -49.22 16 13 O -1.01 -47.27 16.43 -128.00 -2.10 -49.37 16 14 C -0.81 -30.92 6.17 21.99 0.14 -30.78 16 15 C 0.12 4.49 11.81 85.24 1.01 5.50 16 16 N -0.31 -10.57 11.51 -57.02 -0.66 -11.23 16 17 N -0.38 -10.81 3.60 -348.06 -1.25 -12.07 16 18 C 0.09 1.46 6.51 86.38 0.56 2.03 16 19 C 0.44 9.95 3.28 71.98 0.24 10.18 16 20 F -0.18 -5.06 16.28 44.97 0.73 -4.33 16 21 F -0.17 -3.23 17.32 44.97 0.78 -2.45 16 22 F -0.19 -5.64 17.24 44.97 0.78 -4.87 16 23 C 0.18 5.75 11.19 83.54 0.93 6.69 16 24 H 0.04 1.94 7.42 -2.39 -0.02 1.92 16 25 H 0.06 2.88 7.18 -2.38 -0.02 2.86 16 26 H 0.06 2.30 6.93 -2.39 -0.02 2.29 16 27 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 28 H 0.20 6.57 8.06 -2.91 -0.02 6.55 16 29 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.18 1.50 8.07 -2.39 -0.02 1.49 16 31 H 0.22 5.38 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -67.72 301.36 3.30 -64.42 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.19 Total: 10.62 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.24 Total: -12.44 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -2.89 Total: -107.64 kcal Atomic # 8 Polarization: -94.36 SS G_CDS: -4.23 Total: -98.59 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 2.29 Total: -11.64 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 115.58 SS G_CDS: -0.33 Total: 115.26 kcal Total: -67.72 3.30 -64.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358818310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.851 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds