Wall clock time and date at job start Tue Mar 31 2020 04:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47311 * 319.09085 * 3 2 1 5 5 C 1.36932 * 119.99907 * 273.39661 * 4 3 2 6 6 H 1.07998 * 120.00455 * 186.70384 * 5 4 3 7 7 C 1.38815 * 120.00018 * 6.70182 * 5 4 3 8 8 N 1.31621 * 119.99787 * 25.18001 * 7 5 4 9 9 Si 1.86796 * 120.00234 * 205.17702 * 7 5 4 10 10 H 1.48502 * 109.46988 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46954 * 119.99861 * 9 7 5 12 12 H 1.48496 * 109.47486 * 240.00383 * 9 7 5 13 13 S 1.65596 * 119.99983 * 93.39012 * 4 3 2 14 14 O 1.42104 * 106.40566 * 336.46598 * 13 4 3 15 15 O 1.42098 * 106.40243 * 203.54358 * 13 4 3 16 16 C 1.76198 * 107.21644 * 90.00410 * 13 4 3 17 17 C 1.38259 * 119.96040 * 115.25351 * 16 13 4 18 18 C 1.38131 * 120.08186 * 180.30148 * 17 16 13 19 19 C 1.38773 * 119.99222 * 359.72005 * 18 17 16 20 20 O 1.35896 * 120.03836 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00254 * 0.02562 * 20 19 18 22 22 C 1.38667 * 119.91588 * 359.97438 * 19 18 17 23 23 C 1.38378 * 119.92060 * 0.02562 * 22 19 18 24 24 F 1.35107 * 119.99727 * 179.97438 * 23 22 19 25 25 H 4.40652 * 5.51350 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47273 * 199.09104 * 3 2 1 27 27 H 1.09005 * 109.47284 * 79.08929 * 3 2 1 28 28 H 0.97000 * 119.99718 * 179.97438 * 8 7 5 29 29 H 1.08001 * 119.95765 * 0.02562 * 17 16 13 30 30 H 1.07995 * 120.00382 * 179.70020 * 18 17 16 31 31 H 1.09004 * 109.46997 * 179.97438 * 21 20 19 32 32 H 1.08996 * 109.46960 * 299.99870 * 21 20 19 33 33 H 1.09004 * 109.47191 * 60.00026 * 21 20 19 34 34 H 1.07997 * 120.03723 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0430 0.9045 5 6 3.2967 -0.7732 2.2372 6 1 3.7578 -1.5048 2.8842 7 6 2.8682 0.4406 2.7567 8 7 1.9051 1.1092 2.1585 9 14 3.6583 1.1252 4.3047 10 1 4.7091 0.1895 4.7795 11 1 4.2698 2.4451 4.0062 12 1 2.6247 1.2855 5.3588 13 16 3.4915 -2.5489 0.3153 14 8 2.7396 -2.7003 -0.8810 15 8 3.3916 -3.4439 1.4145 16 6 5.1876 -2.5341 -0.1617 17 6 6.0977 -3.3385 0.4988 18 6 7.4291 -3.3242 0.1310 19 6 7.8534 -2.5060 -0.9065 20 8 9.1631 -2.4908 -1.2687 21 6 10.0481 -3.3429 -0.5388 22 6 6.9394 -1.7040 -1.5729 23 6 5.6064 -1.7211 -1.2016 24 9 4.7146 -0.9400 -1.8495 25 1 -1.0499 -0.0001 0.0003 26 1 3.0089 0.9719 0.3361 27 1 3.0094 -0.1937 -1.0091 28 1 1.6054 1.9572 2.5217 29 1 5.7680 -3.9755 1.3062 30 1 8.1397 -3.9494 0.6510 31 1 11.0603 -3.2347 -0.9285 32 1 10.0325 -3.0654 0.5152 33 1 9.7264 -4.3788 -0.6466 34 1 7.2674 -1.0668 -2.3809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490839847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:06 Heat of formation + Delta-G solvation = -63.438120 kcal Electronic energy + Delta-G solvation = -24340.297741 eV Core-core repulsion = 20475.567552 eV Total energy + Delta-G solvation = -3864.730189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.39223 -41.23787 -38.44114 -38.15587 -37.93615 -36.80046 -33.57531 -32.82776 -32.32390 -31.26321 -28.33124 -28.26049 -25.66030 -24.41909 -23.68396 -20.49781 -19.99433 -19.68464 -19.11321 -18.46213 -18.07951 -17.96375 -17.24189 -17.11147 -16.58916 -16.41780 -16.14238 -15.92796 -15.43417 -15.25933 -15.00987 -14.42336 -14.32578 -13.95313 -13.59982 -13.40425 -13.34316 -13.20594 -13.08705 -12.80357 -12.68230 -12.28755 -12.25325 -12.20672 -11.96549 -11.93487 -11.38369 -10.93175 -10.51771 -10.13756 -10.02250 -9.77558 -8.07774 -5.75678 -0.54898 -0.30065 -0.03827 1.47237 1.50506 1.62140 1.93685 1.95615 2.23984 2.41442 2.52269 2.71462 2.83104 3.04364 3.16216 3.34923 3.58762 3.84627 4.00165 4.08677 4.17446 4.37967 4.41618 4.42473 4.49074 4.73713 4.76865 4.88012 4.95884 4.99054 5.27914 5.37938 5.54038 5.68658 6.12450 6.47792 7.05633 7.26641 7.39292 8.89741 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.005762 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.604173 B = 4858.158853 C = 5613.392138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.139 4.139 3 C 0.249 3.751 4 N -0.859 5.859 5 C -0.351 4.351 6 H 0.106 0.894 7 C 0.003 3.997 8 N -0.883 5.883 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.277 1.277 12 H -0.288 1.288 13 S 2.681 3.319 14 O -0.995 6.995 15 O -0.986 6.986 16 C -0.756 4.756 17 C 0.034 3.966 18 C -0.225 4.225 19 C 0.207 3.793 20 O -0.314 6.314 21 C 0.008 3.992 22 C -0.210 4.210 23 C 0.213 3.787 24 F -0.126 7.126 25 H 0.232 0.768 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.264 0.736 29 H 0.161 0.839 30 H 0.183 0.817 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.223 -5.691 -4.914 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.141 4.141 3 C 0.124 3.876 4 N -0.691 5.691 5 C -0.480 4.480 6 H 0.124 0.876 7 C -0.201 4.201 8 N -0.522 5.522 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.214 1.214 13 S 2.774 3.226 14 O -0.985 6.985 15 O -0.976 6.976 16 C -0.844 4.844 17 C 0.015 3.985 18 C -0.244 4.244 19 C 0.159 3.841 20 O -0.226 6.226 21 C -0.086 4.086 22 C -0.230 4.230 23 C 0.192 3.808 24 F -0.105 7.105 25 H 0.248 0.752 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.179 0.821 30 H 0.201 0.799 31 H 0.146 0.854 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.702 -6.122 -5.139 17.619 hybrid contribution 0.036 0.908 0.759 1.184 sum 15.738 -5.213 -4.380 17.147 Atomic orbital electron populations 1.25073 0.96400 1.02307 1.04813 1.23665 0.95415 0.98604 0.96437 1.18049 0.84549 0.93818 0.91187 1.52940 1.74775 1.27307 1.14053 1.19385 1.41718 1.03692 0.83215 0.87613 1.25749 0.95436 0.97214 1.01663 1.70335 1.23476 1.15913 1.42481 0.85292 0.78623 0.78498 0.78373 1.18509 1.20235 1.21428 1.01701 0.75415 0.73155 0.72341 1.93496 1.70049 1.86072 1.48865 1.93428 1.87072 1.63542 1.53595 1.31001 1.28250 1.13868 1.11285 1.20864 0.92021 0.91406 0.94195 1.21733 0.96945 1.04770 1.00955 1.18852 0.84208 0.90575 0.90420 1.86109 1.14474 1.63407 1.58625 1.23625 0.93312 0.94053 0.97578 1.20423 0.89510 1.06481 1.06569 1.16834 0.87288 0.87627 0.89046 1.91522 1.67247 1.71963 1.79721 0.75159 0.88529 0.89939 0.92609 0.82122 0.79940 0.85360 0.90817 0.90525 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.62 19.25 74.32 1.43 -11.19 16 2 C -0.14 -7.18 11.23 31.12 0.35 -6.83 16 3 C 0.25 12.44 5.01 84.57 0.42 12.86 16 4 N -0.86 -43.86 2.88 -352.51 -1.02 -44.87 16 5 C -0.35 -18.75 9.38 84.03 0.79 -17.96 16 6 H 0.11 5.55 7.40 -2.91 -0.02 5.53 16 7 C 0.00 0.13 4.92 84.86 0.42 0.55 16 8 N -0.88 -47.95 8.96 21.65 0.19 -47.75 16 9 Si 0.97 41.41 29.62 68.60 2.03 43.44 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 13 S 2.68 125.63 5.25 -56.49 -0.30 125.33 16 14 O -0.99 -50.03 16.43 -128.00 -2.10 -52.13 16 15 O -0.99 -48.91 15.84 -128.00 -2.03 -50.93 16 16 C -0.76 -28.37 5.92 22.33 0.13 -28.23 16 17 C 0.03 1.04 9.54 22.25 0.21 1.25 16 18 C -0.22 -5.01 9.04 22.37 0.20 -4.81 16 19 C 0.21 4.85 6.69 22.50 0.15 5.00 16 20 O -0.31 -5.77 10.50 -92.38 -0.97 -6.74 16 21 C 0.01 0.07 9.81 113.37 1.11 1.18 16 22 C -0.21 -5.78 9.97 22.41 0.22 -5.56 16 23 C 0.21 7.45 7.21 22.36 0.16 7.61 16 24 F -0.13 -4.75 13.69 44.97 0.62 -4.14 16 25 H 0.23 8.65 7.80 -4.42 -0.03 8.62 16 26 H 0.10 4.94 6.42 -2.39 -0.02 4.93 16 27 H 0.08 3.77 5.05 -2.38 -0.01 3.76 16 28 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 29 H 0.16 4.51 7.33 -2.91 -0.02 4.49 16 30 H 0.18 2.41 6.30 -2.91 -0.02 2.39 16 31 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 33 H 0.08 0.49 7.66 -2.38 -0.02 0.47 16 34 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.64 312.57 3.18 -68.46 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.15 Total: 15.46 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 5.60 Total: -46.12 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -0.82 Total: -92.63 kcal Atomic # 8 Polarization: -104.71 SS G_CDS: -5.10 Total: -109.80 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.62 Total: -4.14 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 125.63 SS G_CDS: -0.30 Total: 125.33 kcal Total: -71.64 3.18 -68.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490839847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.019 kcal (2) G-P(sol) polarization free energy of solvation -71.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds