Wall clock time and date at job start Tue Mar 31 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46829 * 218.39913 * 3 2 1 5 5 C 1.36939 * 120.00258 * 273.47209 * 4 3 2 6 6 H 1.07995 * 120.00010 * 180.92894 * 5 4 3 7 7 C 1.38812 * 119.99857 * 0.92402 * 5 4 3 8 8 N 1.31624 * 119.99727 * 26.48853 * 7 5 4 9 9 Si 1.86797 * 120.00250 * 206.49324 * 7 5 4 10 10 H 1.48492 * 109.47324 * 84.98637 * 9 7 5 11 11 H 1.48505 * 109.47202 * 204.98969 * 9 7 5 12 12 H 1.48498 * 109.46739 * 324.98577 * 9 7 5 13 13 S 1.65604 * 120.00078 * 93.47422 * 4 3 2 14 14 O 1.42103 * 106.40369 * 156.46161 * 13 4 3 15 15 O 1.42097 * 106.40384 * 23.53280 * 13 4 3 16 16 C 1.76200 * 107.21448 * 269.99840 * 13 4 3 17 17 C 1.38266 * 119.93860 * 270.01893 * 16 13 4 18 18 C 1.38177 * 120.09766 * 180.02562 * 17 16 13 19 19 C 1.38661 * 119.96973 * 359.97419 * 18 17 16 20 20 O 1.35954 * 120.06217 * 180.27707 * 19 18 17 21 21 C 1.42902 * 117.00074 * 359.72649 * 20 19 18 22 22 C 1.38905 * 119.87664 * 0.02562 * 19 18 17 23 23 F 1.35100 * 120.05187 * 180.02562 * 22 19 18 24 24 C 1.38262 * 119.94051 * 90.00444 * 16 13 4 25 25 H 4.40637 * 5.51374 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47366 * 98.39887 * 3 2 1 27 27 H 1.09000 * 109.47089 * 338.39790 * 3 2 1 28 28 H 0.97002 * 119.99596 * 180.02562 * 8 7 5 29 29 H 1.07999 * 119.94772 * 0.02602 * 17 16 13 30 30 H 1.08005 * 120.01920 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.47212 * 299.99537 * 21 20 19 32 32 H 1.08994 * 109.46941 * 60.00161 * 21 20 19 33 33 H 1.09000 * 109.47192 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.98046 * 359.97438 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0833 0.8579 5 6 3.2937 2.3434 0.3461 6 1 3.6675 3.1381 0.9746 7 6 2.9755 2.5991 -0.9806 8 7 2.0761 1.8608 -1.5957 9 14 3.8236 3.9911 -1.8930 10 1 5.1148 3.5073 -2.4441 11 1 2.9547 4.4568 -3.0036 12 1 4.0754 5.1157 -0.9565 13 16 3.4918 0.7835 2.4467 14 8 4.4155 1.7868 2.8462 15 8 3.7664 -0.6076 2.5406 16 6 2.0205 1.0638 3.3748 17 6 1.7552 2.3215 3.8844 18 6 0.6026 2.5449 4.6131 19 6 -0.2898 1.5067 4.8333 20 8 -1.4271 1.7258 5.5452 21 6 -1.6366 3.0491 6.0422 22 6 -0.0221 0.2437 4.3208 23 9 -0.8894 -0.7702 4.5328 24 6 1.1332 0.0259 3.5918 25 1 -1.0501 -0.0002 -0.0004 26 1 3.0093 0.1509 -1.0166 27 1 3.0098 -0.9547 0.3783 28 1 1.8540 2.0393 -2.5229 29 1 2.4499 3.1304 3.7126 30 1 0.3965 3.5279 5.0102 31 1 -0.8175 3.3211 6.7080 32 1 -1.6742 3.7490 5.2075 33 1 -2.5782 3.0866 6.5900 34 1 1.3424 -0.9553 3.1921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490840984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:11 Heat of formation + Delta-G solvation = -49.326839 kcal Electronic energy + Delta-G solvation = -24274.371325 eV Core-core repulsion = 20410.253047 eV Total energy + Delta-G solvation = -3864.118278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.49997 -39.82920 -37.19306 -36.40133 -35.97129 -34.54118 -32.14081 -31.19337 -30.47833 -30.07040 -27.37433 -26.68869 -23.90510 -22.54945 -22.49958 -18.73423 -18.42910 -18.02225 -17.40664 -16.70529 -16.64417 -16.32611 -16.06348 -15.42228 -14.91103 -14.71729 -14.63931 -14.42851 -14.06996 -13.51682 -13.46751 -12.86707 -12.55991 -12.43440 -12.25383 -11.93295 -11.90549 -11.35746 -11.18764 -11.12594 -11.04152 -10.86873 -10.80890 -10.56107 -10.35083 -10.07001 -9.69516 -9.32196 -8.95962 -8.70137 -8.39825 -8.14889 -6.70129 -4.01986 1.16146 1.41761 1.61514 3.04415 3.11078 3.11608 3.15917 3.57189 3.78849 3.94314 4.08291 4.41499 4.49614 4.60848 4.79432 4.93913 5.01176 5.02945 5.21442 5.32593 5.51163 5.54240 5.69672 5.72701 5.86205 6.20044 6.26734 6.32196 6.57350 6.71891 6.82704 6.93358 7.09057 7.21793 7.34212 8.06846 8.48144 8.81612 8.89483 10.23039 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.005396 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.462724 B = 5187.790676 C = 5302.068829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.118 4.118 3 C 0.225 3.775 4 N -0.792 5.792 5 C -0.241 4.241 6 H 0.124 0.876 7 C 0.028 3.972 8 N -0.817 5.817 9 Si 0.934 3.066 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.264 1.264 13 S 2.534 3.466 14 O -0.980 6.980 15 O -0.993 6.993 16 C -0.665 4.665 17 C 0.004 3.996 18 C -0.207 4.207 19 C 0.120 3.880 20 O -0.312 6.312 21 C 0.026 3.974 22 C 0.043 3.957 23 F -0.137 7.137 24 C -0.022 4.022 25 H 0.196 0.804 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.277 0.723 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 2.567 5.577 7.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.120 4.120 3 C 0.099 3.901 4 N -0.614 5.614 5 C -0.389 4.389 6 H 0.142 0.858 7 C -0.184 4.184 8 N -0.456 5.456 9 Si 0.759 3.241 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.188 1.188 13 S 2.630 3.370 14 O -0.969 6.969 15 O -0.983 6.983 16 C -0.742 4.742 17 C -0.015 4.015 18 C -0.226 4.226 19 C 0.074 3.926 20 O -0.225 6.225 21 C -0.069 4.069 22 C 0.023 3.977 23 F -0.116 7.116 24 C -0.042 4.042 25 H 0.214 0.786 26 H 0.144 0.856 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.108 1.964 6.123 7.630 hybrid contribution -1.284 1.040 -0.195 1.664 sum -5.391 3.004 5.928 8.557 Atomic orbital electron populations 1.24275 0.95375 1.04457 1.04140 1.23523 0.94652 0.96654 0.97216 1.18825 0.83754 0.89147 0.98328 1.55750 1.71039 1.14909 1.19685 1.20189 1.34167 0.89700 0.94795 0.85828 1.25585 0.95658 0.99189 0.98015 1.70268 1.24468 1.37805 1.13078 0.85808 0.79305 0.80063 0.78971 1.19485 1.20741 1.18835 1.11644 0.78376 0.73524 0.73418 1.93360 1.62070 1.59129 1.82382 1.93358 1.85589 1.32886 1.86457 1.32489 1.26837 0.98688 1.16176 1.20740 0.94504 0.95806 0.90466 1.21214 0.96811 0.98320 1.06302 1.19085 0.87050 0.93263 0.93239 1.86113 1.37587 1.32179 1.66669 1.23103 1.02585 0.82240 0.98974 1.17059 0.91690 0.83068 1.05892 1.91462 1.68375 1.58021 1.93753 1.20697 0.90127 0.99889 0.93466 0.78648 0.85600 0.90021 0.91162 0.83942 0.84551 0.92418 0.92300 0.88139 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.43 19.25 29.55 0.57 -4.86 16 2 C -0.12 -2.59 11.65 -37.12 -0.43 -3.02 16 3 C 0.22 4.87 5.45 -6.83 -0.04 4.84 16 4 N -0.79 -18.00 2.88 -62.77 -0.18 -18.18 16 5 C -0.24 -5.57 9.45 -15.06 -0.14 -5.71 16 6 H 0.12 2.79 7.28 -52.49 -0.38 2.41 16 7 C 0.03 0.62 4.99 -17.43 -0.09 0.54 16 8 N -0.82 -18.65 9.01 55.49 0.50 -18.15 16 9 Si 0.93 17.61 29.63 -169.99 -5.04 12.58 16 10 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 11 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 12 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 13 S 2.53 56.87 5.65 -107.50 -0.61 56.26 16 14 O -0.98 -23.55 16.08 -57.17 -0.92 -24.47 16 15 O -0.99 -23.50 15.84 -57.17 -0.91 -24.40 16 16 C -0.67 -13.67 5.97 -39.56 -0.24 -13.90 16 17 C 0.00 0.08 9.51 -39.59 -0.38 -0.30 16 18 C -0.21 -3.35 9.04 -39.45 -0.36 -3.70 16 19 C 0.12 2.08 6.69 -39.18 -0.26 1.82 16 20 O -0.31 -4.79 10.36 -19.60 -0.20 -5.00 16 21 C 0.03 0.26 9.81 101.05 0.99 1.25 16 22 C 0.04 0.82 7.31 -39.30 -0.29 0.54 16 23 F -0.14 -2.59 17.11 2.25 0.04 -2.55 16 24 C -0.02 -0.44 9.49 -39.54 -0.38 -0.81 16 25 H 0.20 3.41 7.80 -54.08 -0.42 2.98 16 26 H 0.13 2.76 6.05 -51.93 -0.31 2.44 16 27 H 0.08 1.65 6.94 -51.93 -0.36 1.29 16 28 H 0.28 5.99 8.31 -40.82 -0.34 5.65 16 29 H 0.14 2.47 7.61 -52.49 -0.40 2.07 16 30 H 0.14 1.70 6.30 -52.48 -0.33 1.37 16 31 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 32 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.15 2.86 7.61 -52.49 -0.40 2.46 16 LS Contribution 317.89 15.07 4.79 4.79 Total: -1.00 -28.80 317.89 -6.52 -35.32 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -2.96 Total: 7.14 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.03 Total: -23.33 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.32 Total: -36.33 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -2.03 Total: -53.87 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.04 Total: 12.58 kcal Atomic # 16 Polarization: 56.87 SS G_CDS: -0.61 Total: 56.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.80 -6.52 -35.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490840984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.009 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds