Wall clock time and date at job start Tue Mar 31 2020 04:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46829 * 218.39913 * 3 2 1 5 5 C 1.36939 * 120.00258 * 273.47209 * 4 3 2 6 6 H 1.07995 * 120.00010 * 180.92894 * 5 4 3 7 7 C 1.38812 * 119.99857 * 0.92402 * 5 4 3 8 8 N 1.31624 * 119.99727 * 26.48853 * 7 5 4 9 9 Si 1.86797 * 120.00250 * 206.49324 * 7 5 4 10 10 H 1.48492 * 109.47324 * 84.98637 * 9 7 5 11 11 H 1.48505 * 109.47202 * 204.98969 * 9 7 5 12 12 H 1.48498 * 109.46739 * 324.98577 * 9 7 5 13 13 S 1.65604 * 120.00078 * 93.47422 * 4 3 2 14 14 O 1.42103 * 106.40369 * 156.46161 * 13 4 3 15 15 O 1.42097 * 106.40384 * 23.53280 * 13 4 3 16 16 C 1.76200 * 107.21448 * 269.99840 * 13 4 3 17 17 C 1.38266 * 119.93860 * 270.01893 * 16 13 4 18 18 C 1.38177 * 120.09766 * 180.02562 * 17 16 13 19 19 C 1.38661 * 119.96973 * 359.97419 * 18 17 16 20 20 O 1.35954 * 120.06217 * 180.27707 * 19 18 17 21 21 C 1.42902 * 117.00074 * 359.72649 * 20 19 18 22 22 C 1.38905 * 119.87664 * 0.02562 * 19 18 17 23 23 F 1.35100 * 120.05187 * 180.02562 * 22 19 18 24 24 C 1.38262 * 119.94051 * 90.00444 * 16 13 4 25 25 H 4.40637 * 5.51374 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47366 * 98.39887 * 3 2 1 27 27 H 1.09000 * 109.47089 * 338.39790 * 3 2 1 28 28 H 0.97002 * 119.99596 * 180.02562 * 8 7 5 29 29 H 1.07999 * 119.94772 * 0.02602 * 17 16 13 30 30 H 1.08005 * 120.01920 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.47212 * 299.99537 * 21 20 19 32 32 H 1.08994 * 109.46941 * 60.00161 * 21 20 19 33 33 H 1.09000 * 109.47192 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.98046 * 359.97438 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0833 0.8579 5 6 3.2937 2.3434 0.3461 6 1 3.6675 3.1381 0.9746 7 6 2.9755 2.5991 -0.9806 8 7 2.0761 1.8608 -1.5957 9 14 3.8236 3.9911 -1.8930 10 1 5.1148 3.5073 -2.4441 11 1 2.9547 4.4568 -3.0036 12 1 4.0754 5.1157 -0.9565 13 16 3.4918 0.7835 2.4467 14 8 4.4155 1.7868 2.8462 15 8 3.7664 -0.6076 2.5406 16 6 2.0205 1.0638 3.3748 17 6 1.7552 2.3215 3.8844 18 6 0.6026 2.5449 4.6131 19 6 -0.2898 1.5067 4.8333 20 8 -1.4271 1.7258 5.5452 21 6 -1.6366 3.0491 6.0422 22 6 -0.0221 0.2437 4.3208 23 9 -0.8894 -0.7702 4.5328 24 6 1.1332 0.0259 3.5918 25 1 -1.0501 -0.0002 -0.0004 26 1 3.0093 0.1509 -1.0166 27 1 3.0098 -0.9547 0.3783 28 1 1.8540 2.0393 -2.5229 29 1 2.4499 3.1304 3.7126 30 1 0.3965 3.5279 5.0102 31 1 -0.8175 3.3211 6.7080 32 1 -1.6742 3.7490 5.2075 33 1 -2.5782 3.0866 6.5900 34 1 1.3424 -0.9553 3.1921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490840984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:10 Heat of formation + Delta-G solvation = -67.177393 kcal Electronic energy + Delta-G solvation = -24275.145383 eV Core-core repulsion = 20410.253047 eV Total energy + Delta-G solvation = -3864.892336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.96047 -41.09349 -38.51946 -38.09284 -37.82464 -36.41357 -33.81415 -32.87970 -31.89256 -31.41507 -28.39793 -28.33055 -25.62350 -23.98288 -23.86429 -20.41441 -19.95242 -19.52842 -18.92822 -18.37808 -18.07009 -17.97419 -17.28819 -16.97596 -16.41222 -16.16980 -16.09987 -15.89517 -15.34229 -15.19060 -15.09255 -14.27155 -14.22592 -13.89258 -13.55702 -13.53750 -13.14187 -13.04152 -12.72914 -12.64553 -12.59846 -12.33261 -12.29597 -12.26593 -11.95329 -11.74174 -11.34296 -10.99455 -10.61932 -10.12664 -10.08200 -9.55581 -8.36149 -5.77149 -0.34355 -0.06793 -0.01774 1.53525 1.60428 1.67549 1.96776 2.00687 2.26090 2.35866 2.41946 2.79356 2.91922 3.03817 3.24709 3.48996 3.69558 3.91664 3.97772 4.14429 4.28223 4.33118 4.37060 4.46637 4.54605 4.66121 4.84236 4.91129 5.01041 5.08846 5.26517 5.43068 5.45935 5.54035 6.10417 6.35641 6.79078 7.15641 7.19427 8.57665 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.005396 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.462724 B = 5187.790676 C = 5302.068829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.147 4.147 3 C 0.226 3.774 4 N -0.803 5.803 5 C -0.273 4.273 6 H 0.122 0.878 7 C 0.001 3.999 8 N -0.839 5.839 9 Si 0.990 3.010 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.260 1.260 13 S 2.555 3.445 14 O -0.999 6.999 15 O -1.012 7.012 16 C -0.688 4.688 17 C -0.003 4.003 18 C -0.195 4.195 19 C 0.132 3.868 20 O -0.324 6.324 21 C 0.011 3.989 22 C 0.025 3.975 23 F -0.140 7.140 24 C -0.032 4.032 25 H 0.225 0.775 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.279 0.721 29 H 0.152 0.848 30 H 0.180 0.820 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 4.290 6.557 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.150 4.150 3 C 0.100 3.900 4 N -0.626 5.626 5 C -0.418 4.418 6 H 0.139 0.861 7 C -0.209 4.209 8 N -0.478 5.478 9 Si 0.813 3.187 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.184 1.184 13 S 2.655 3.345 14 O -0.989 6.989 15 O -1.002 7.002 16 C -0.768 4.768 17 C -0.023 4.023 18 C -0.214 4.214 19 C 0.084 3.916 20 O -0.237 6.237 21 C -0.083 4.083 22 C 0.005 3.995 23 F -0.119 7.119 24 C -0.052 4.052 25 H 0.241 0.759 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.169 0.831 30 H 0.198 0.802 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.434 3.694 7.073 9.654 hybrid contribution -1.023 0.497 -0.294 1.174 sum -6.456 4.191 6.780 10.257 Atomic orbital electron populations 1.24989 0.96217 1.03295 1.02944 1.23736 0.95157 0.97746 0.98339 1.18768 0.84156 0.89083 0.97945 1.55477 1.72226 1.15129 1.19758 1.20306 1.36172 0.89747 0.95610 0.86094 1.26227 0.95662 1.01027 0.98028 1.70336 1.25204 1.39020 1.13258 0.84972 0.78200 0.77766 0.77782 1.19461 1.20503 1.18446 1.10285 0.78168 0.72669 0.73381 1.93329 1.63099 1.59612 1.82839 1.93328 1.86141 1.33851 1.86870 1.32044 1.26303 1.00205 1.18263 1.20986 0.95691 0.95104 0.90492 1.21572 0.95123 0.99895 1.04765 1.19169 0.87645 0.92590 0.92163 1.86127 1.36270 1.35392 1.65928 1.23572 1.04797 0.79951 0.99941 1.17176 0.91640 0.84051 1.06661 1.91446 1.68321 1.58315 1.93818 1.20652 0.90787 0.99615 0.94143 0.75868 0.86211 0.89541 0.91035 0.83076 0.80242 0.90645 0.91038 0.85366 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.39 19.25 74.32 1.43 -8.96 16 2 C -0.15 -6.52 11.65 31.13 0.36 -6.16 16 3 C 0.23 10.04 5.45 84.58 0.46 10.50 16 4 N -0.80 -37.22 2.88 -352.52 -1.02 -38.24 16 5 C -0.27 -12.76 9.45 84.03 0.79 -11.97 16 6 H 0.12 5.55 7.28 -2.91 -0.02 5.53 16 7 C 0.00 0.03 4.99 84.86 0.42 0.45 16 8 N -0.84 -38.52 9.01 21.65 0.20 -38.32 16 9 Si 0.99 35.80 29.63 68.60 2.03 37.83 16 10 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 11 H -0.28 -9.92 7.11 99.48 0.71 -9.21 16 12 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 13 S 2.56 116.55 5.65 -56.49 -0.32 116.23 16 14 O -1.00 -48.48 16.08 -128.00 -2.06 -50.54 16 15 O -1.01 -48.97 15.84 -128.00 -2.03 -51.00 16 16 C -0.69 -28.16 5.97 22.28 0.13 -28.02 16 17 C 0.00 -0.12 9.51 22.26 0.21 0.09 16 18 C -0.19 -5.68 9.04 22.36 0.20 -5.48 16 19 C 0.13 4.24 6.69 22.53 0.15 4.39 16 20 O -0.32 -8.89 10.36 -93.03 -0.96 -9.85 16 21 C 0.01 0.17 9.81 113.37 1.11 1.28 16 22 C 0.03 0.93 7.31 22.45 0.16 1.10 16 23 F -0.14 -5.20 17.11 44.97 0.77 -4.43 16 24 C -0.03 -1.28 9.49 22.30 0.21 -1.07 16 25 H 0.22 7.39 7.80 -4.41 -0.03 7.36 16 26 H 0.12 5.43 6.05 -2.39 -0.01 5.41 16 27 H 0.09 3.64 6.94 -2.39 -0.02 3.62 16 28 H 0.28 12.08 8.31 -92.71 -0.77 11.31 16 29 H 0.15 5.03 7.61 -2.91 -0.02 5.00 16 30 H 0.18 3.58 6.30 -2.91 -0.02 3.56 16 31 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 32 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.14 5.65 7.61 -2.91 -0.02 5.63 16 Total: -1.00 -61.58 317.89 3.41 -58.16 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 1.14 Total: 24.01 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 5.66 Total: -43.84 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -0.82 Total: -76.56 kcal Atomic # 8 Polarization: -106.35 SS G_CDS: -5.05 Total: -111.40 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.77 Total: -4.43 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Atomic # 16 Polarization: 116.55 SS G_CDS: -0.32 Total: 116.23 kcal Total: -61.58 3.41 -58.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490840984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.013 kcal (2) G-P(sol) polarization free energy of solvation -61.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds