Wall clock time and date at job start Tue Mar 31 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47187 * 77.96898 * 3 2 1 5 5 C 1.36878 * 119.99883 * 264.61219 * 4 3 2 6 6 H 1.08003 * 120.00153 * 128.16751 * 5 4 3 7 7 C 1.39001 * 120.00287 * 308.17002 * 5 4 3 8 8 N 1.31393 * 120.00241 * 3.97220 * 7 5 4 9 9 Si 1.86803 * 120.00004 * 183.97522 * 7 5 4 10 10 H 1.48501 * 109.47443 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47390 * 120.00165 * 9 7 5 12 12 H 1.48506 * 109.46943 * 239.99981 * 9 7 5 13 13 C 1.34778 * 120.00012 * 84.61376 * 4 3 2 14 14 O 1.21746 * 120.00051 * 4.07213 * 13 4 3 15 15 C 1.46458 * 119.99786 * 184.07187 * 13 4 3 16 16 C 1.36769 * 125.46053 * 173.04726 * 15 13 4 17 17 C 1.37443 * 113.27829 * 180.02562 * 16 15 13 18 18 S 1.76200 * 122.44480 * 179.97438 * 17 16 15 19 19 C 1.81393 * 104.45094 * 89.99769 * 18 17 16 20 20 O 1.42103 * 104.27586 * 206.07069 * 18 17 16 21 21 O 1.42097 * 104.27768 * 333.92358 * 18 17 16 22 22 C 1.33842 * 115.10663 * 359.97438 * 17 16 15 23 23 S 1.70614 * 110.97334 * 359.73195 * 22 17 16 24 24 H 4.40640 * 5.51465 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47438 * 317.96770 * 3 2 1 26 26 H 1.09007 * 109.47162 * 197.96458 * 3 2 1 27 27 H 0.96996 * 120.00778 * 179.97438 * 8 7 5 28 28 H 1.08006 * 123.36178 * 0.02562 * 16 15 13 29 29 H 1.09000 * 109.47346 * 59.99975 * 19 18 17 30 30 H 1.09000 * 109.47582 * 179.97438 * 19 18 17 31 31 H 1.08999 * 109.47181 * 299.99941 * 19 18 17 32 32 H 1.07999 * 124.51342 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2870 -1.3509 5 6 3.4681 -1.5679 -1.6997 6 1 3.0507 -2.0108 -2.5919 7 6 4.3440 -2.2988 -0.9055 8 7 4.7907 -1.7895 0.2204 9 14 4.8862 -4.0049 -1.4389 10 1 4.2453 -4.3456 -2.7344 11 1 6.3627 -4.0289 -1.5951 12 1 4.4811 -4.9970 -0.4107 13 6 3.2553 0.7095 -2.2502 14 8 3.0298 1.8591 -1.9190 15 6 3.6581 0.4094 -3.6260 16 6 3.6858 1.3063 -4.6582 17 6 4.1043 0.7550 -5.8456 18 16 4.2295 1.6938 -7.3314 19 6 5.9238 2.3417 -7.3161 20 8 4.0722 0.7335 -8.3670 21 8 3.2913 2.7472 -7.1605 22 6 4.4097 -0.5469 -5.7909 23 16 4.1908 -1.1598 -4.2138 24 1 -1.0500 0.0002 -0.0001 25 1 3.0097 -0.7625 0.6881 26 1 3.0089 0.9784 0.3170 27 1 5.4016 -2.2996 0.7748 28 1 3.4067 2.3441 -4.5509 29 1 6.6300 1.5116 -7.2985 30 1 6.0914 2.9419 -8.2104 31 1 6.0682 2.9604 -6.4305 32 1 4.7531 -1.1308 -6.6321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490964080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:23 Heat of formation + Delta-G solvation = -9.493135 kcal Electronic energy + Delta-G solvation = -21173.483250 eV Core-core repulsion = 17741.472373 eV Total energy + Delta-G solvation = -3432.010878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.027 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -38.93532 -37.12085 -36.90321 -35.75348 -35.16991 -32.76311 -31.61804 -29.68585 -29.36756 -26.84606 -25.47084 -24.13574 -21.34893 -19.34725 -18.42915 -18.23723 -17.74611 -16.44413 -16.33728 -16.07679 -15.80235 -15.20010 -14.96195 -14.49027 -14.25674 -13.53559 -13.23679 -13.20844 -13.01027 -12.70817 -12.47530 -12.17628 -12.14679 -11.93979 -11.82971 -11.78638 -11.54645 -11.31178 -11.14095 -10.87066 -10.61720 -10.11076 -9.84673 -9.50453 -9.14819 -8.91102 -8.48088 -8.27325 -7.78239 -6.82039 -4.73630 0.21809 1.03870 2.16722 2.35778 2.57391 2.88797 2.96678 2.99963 3.17953 3.38386 3.62957 3.76245 4.01467 4.14814 4.26727 4.57295 4.66341 4.74570 5.00115 5.25230 5.29509 5.58624 5.76016 5.91805 6.18093 6.39385 6.58738 6.67386 6.74435 6.83200 7.00680 7.60633 7.88687 8.36145 8.57630 9.05391 9.50936 10.18287 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.005186 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.131110 B = 5397.540362 C = 6526.222702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.159 4.159 3 C 0.214 3.786 4 N -0.436 5.436 5 C -0.348 4.348 6 H 0.099 0.901 7 C 0.067 3.933 8 N -0.842 5.842 9 Si 0.905 3.095 10 H -0.254 1.254 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.552 3.448 14 O -0.580 6.580 15 C -0.229 4.229 16 C -0.033 4.033 17 C -0.678 4.678 18 S 2.515 3.485 19 C -0.651 4.651 20 O -0.948 6.948 21 O -0.942 6.942 22 C -0.221 4.221 23 S 0.345 5.655 24 H 0.208 0.792 25 H 0.132 0.868 26 H 0.083 0.917 27 H 0.281 0.719 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -0.320 -7.943 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.161 4.161 3 C 0.092 3.908 4 N -0.155 5.155 5 C -0.483 4.483 6 H 0.115 0.885 7 C -0.145 4.145 8 N -0.474 5.474 9 Si 0.729 3.271 10 H -0.177 1.177 11 H -0.193 1.193 12 H -0.196 1.196 13 C 0.341 3.659 14 O -0.465 6.465 15 C -0.351 4.351 16 C -0.063 4.063 17 C -0.780 4.780 18 S 2.694 3.306 19 C -0.801 4.801 20 O -0.945 6.945 21 O -0.939 6.939 22 C -0.361 4.361 23 S 0.619 5.381 24 H 0.225 0.775 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.660 -1.092 -7.608 8.512 hybrid contribution 0.459 0.324 -0.197 0.596 sum 4.119 -0.768 -7.805 8.858 Atomic orbital electron populations 1.24635 0.95679 1.04659 1.01909 1.24368 0.95523 0.97321 0.98856 1.18592 0.81406 1.03345 0.87432 1.43091 1.56126 1.06499 1.09767 1.19353 1.27245 0.90639 1.11025 0.88453 1.25699 0.93794 1.00167 0.94866 1.69678 1.28622 1.38386 1.10761 0.86153 0.79579 0.81104 0.80290 1.17748 1.19343 1.19558 1.17327 0.79755 0.85023 0.83784 1.90706 1.55611 1.20357 1.79793 1.24829 1.13299 0.98171 0.98822 1.20099 0.96730 1.00630 0.88834 1.28861 1.22511 1.07147 1.19529 1.04600 0.77077 0.74700 0.74189 1.30230 1.24921 1.13444 1.11513 1.93538 1.85410 1.60752 1.54842 1.93562 1.57414 1.56981 1.85959 1.26601 1.00791 0.98849 1.09883 1.84587 1.52427 1.08249 0.92803 0.77489 0.85088 0.89854 0.90805 0.82753 0.85230 0.85574 0.84894 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.84 19.25 29.55 0.57 -4.27 16 2 C -0.16 -3.52 13.62 -37.12 -0.51 -4.03 16 3 C 0.21 4.96 5.35 -6.83 -0.04 4.93 16 4 N -0.44 -10.53 2.44 -119.49 -0.29 -10.82 16 5 C -0.35 -7.97 6.72 -15.02 -0.10 -8.07 16 6 H 0.10 2.14 5.50 -33.79 -0.19 1.95 16 7 C 0.07 1.48 5.34 -17.46 -0.09 1.39 16 8 N -0.84 -19.54 11.25 55.50 0.62 -18.91 16 9 Si 0.91 16.77 29.56 -169.99 -5.02 11.74 16 10 H -0.25 -4.44 7.11 56.52 0.40 -4.04 16 11 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 12 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 13 C 0.55 13.55 7.54 -12.95 -0.10 13.45 16 14 O -0.58 -15.43 16.49 5.15 0.08 -15.34 16 15 C -0.23 -4.89 6.30 -36.80 -0.23 -5.12 16 16 C -0.03 -0.62 9.48 -40.40 -0.38 -1.01 16 17 C -0.68 -10.95 5.55 -41.41 -0.23 -11.18 16 18 S 2.52 33.35 5.85 -107.50 -0.63 32.72 16 19 C -0.65 -5.56 10.79 101.05 1.09 -4.47 16 20 O -0.95 -14.69 17.46 -57.54 -1.00 -15.70 16 21 O -0.94 -15.70 17.47 -57.54 -1.01 -16.70 16 22 C -0.22 -3.43 10.34 29.19 0.30 -3.13 16 23 S 0.34 6.18 18.40 -107.50 -1.98 4.20 16 24 H 0.21 3.06 7.80 -54.09 -0.42 2.64 16 25 H 0.13 3.07 5.83 -51.93 -0.30 2.77 16 26 H 0.08 1.95 7.53 -51.92 -0.39 1.56 16 27 H 0.28 6.05 8.31 -40.82 -0.34 5.71 16 28 H 0.15 2.91 7.93 -52.48 -0.42 2.50 16 29 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.13 1.05 8.14 -51.92 -0.42 0.62 16 32 H 0.17 2.09 7.93 -52.49 -0.42 1.68 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -31.75 315.78 -6.72 -38.47 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -2.54 Total: 7.10 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 0.28 Total: -21.51 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.33 Total: -29.74 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.92 Total: -47.74 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.02 Total: 11.74 kcal Atomic # 16 Polarization: 39.53 SS G_CDS: -2.61 Total: 36.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.75 -6.72 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds