Wall clock time and date at job start Tue Mar 31 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47187 * 77.96898 * 3 2 1 5 5 C 1.36878 * 119.99883 * 264.61219 * 4 3 2 6 6 H 1.08003 * 120.00153 * 128.16751 * 5 4 3 7 7 C 1.39001 * 120.00287 * 308.17002 * 5 4 3 8 8 N 1.31393 * 120.00241 * 3.97220 * 7 5 4 9 9 Si 1.86803 * 120.00004 * 183.97522 * 7 5 4 10 10 H 1.48501 * 109.47443 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47390 * 120.00165 * 9 7 5 12 12 H 1.48506 * 109.46943 * 239.99981 * 9 7 5 13 13 C 1.34778 * 120.00012 * 84.61376 * 4 3 2 14 14 O 1.21746 * 120.00051 * 4.07213 * 13 4 3 15 15 C 1.46458 * 119.99786 * 184.07187 * 13 4 3 16 16 C 1.36769 * 125.46053 * 173.04726 * 15 13 4 17 17 C 1.37443 * 113.27829 * 180.02562 * 16 15 13 18 18 S 1.76200 * 122.44480 * 179.97438 * 17 16 15 19 19 C 1.81393 * 104.45094 * 89.99769 * 18 17 16 20 20 O 1.42103 * 104.27586 * 206.07069 * 18 17 16 21 21 O 1.42097 * 104.27768 * 333.92358 * 18 17 16 22 22 C 1.33842 * 115.10663 * 359.97438 * 17 16 15 23 23 S 1.70614 * 110.97334 * 359.73195 * 22 17 16 24 24 H 4.40640 * 5.51465 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47438 * 317.96770 * 3 2 1 26 26 H 1.09007 * 109.47162 * 197.96458 * 3 2 1 27 27 H 0.96996 * 120.00778 * 179.97438 * 8 7 5 28 28 H 1.08006 * 123.36178 * 0.02562 * 16 15 13 29 29 H 1.09000 * 109.47346 * 59.99975 * 19 18 17 30 30 H 1.09000 * 109.47582 * 179.97438 * 19 18 17 31 31 H 1.08999 * 109.47181 * 299.99941 * 19 18 17 32 32 H 1.07999 * 124.51342 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2870 -1.3509 5 6 3.4681 -1.5679 -1.6997 6 1 3.0507 -2.0108 -2.5919 7 6 4.3440 -2.2988 -0.9055 8 7 4.7907 -1.7895 0.2204 9 14 4.8862 -4.0049 -1.4389 10 1 4.2453 -4.3456 -2.7344 11 1 6.3627 -4.0289 -1.5951 12 1 4.4811 -4.9970 -0.4107 13 6 3.2553 0.7095 -2.2502 14 8 3.0298 1.8591 -1.9190 15 6 3.6581 0.4094 -3.6260 16 6 3.6858 1.3063 -4.6582 17 6 4.1043 0.7550 -5.8456 18 16 4.2295 1.6938 -7.3314 19 6 5.9238 2.3417 -7.3161 20 8 4.0722 0.7335 -8.3670 21 8 3.2913 2.7472 -7.1605 22 6 4.4097 -0.5469 -5.7909 23 16 4.1908 -1.1598 -4.2138 24 1 -1.0500 0.0002 -0.0001 25 1 3.0097 -0.7625 0.6881 26 1 3.0089 0.9784 0.3170 27 1 5.4016 -2.2996 0.7748 28 1 3.4067 2.3441 -4.5509 29 1 6.6300 1.5116 -7.2985 30 1 6.0914 2.9419 -8.2104 31 1 6.0682 2.9604 -6.4305 32 1 4.7531 -1.1308 -6.6321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490964080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:23 Heat of formation + Delta-G solvation = -32.295984 kcal Electronic energy + Delta-G solvation = -21174.472056 eV Core-core repulsion = 17741.472373 eV Total energy + Delta-G solvation = -3432.999683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.027 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70883 -38.57620 -38.05069 -36.99697 -36.88282 -34.44207 -33.35497 -31.07188 -30.22909 -28.53225 -27.14323 -25.61888 -22.88104 -20.99144 -19.77899 -19.65617 -19.22487 -18.06997 -17.62595 -17.31379 -17.10168 -16.78939 -16.45522 -16.05722 -15.88904 -14.91821 -14.69114 -14.25269 -14.00967 -13.99105 -13.92978 -13.77076 -13.69426 -13.41480 -13.17870 -13.10558 -12.99862 -12.85837 -12.46008 -12.05795 -11.88169 -11.61469 -11.49580 -11.12327 -10.86624 -10.68200 -9.98451 -9.77973 -9.47617 -8.50319 -6.50315 -0.78150 -0.39648 0.71214 0.91908 1.18667 1.43265 1.44865 1.58204 1.71635 1.96157 2.07429 2.19614 2.36360 2.88213 2.96280 3.06985 3.32097 3.68904 4.00995 4.15182 4.17625 4.27454 4.45890 4.66339 4.77750 4.98326 4.98934 5.03623 5.12258 5.24586 5.31307 5.84458 6.14777 6.72076 6.84826 7.25572 7.73193 8.52585 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.005186 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.131110 B = 5397.540362 C = 6526.222702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.226 4.226 3 C 0.218 3.782 4 N -0.442 5.442 5 C -0.369 4.369 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.959 3.041 10 H -0.234 1.234 11 H -0.262 1.262 12 H -0.271 1.271 13 C 0.535 3.465 14 O -0.622 6.622 15 C -0.278 4.278 16 C -0.027 4.027 17 C -0.688 4.688 18 S 2.525 3.475 19 C -0.623 4.623 20 O -0.970 6.970 21 O -0.983 6.983 22 C -0.195 4.195 23 S 0.355 5.645 24 H 0.256 0.744 25 H 0.122 0.878 26 H 0.063 0.937 27 H 0.285 0.715 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.145 0.855 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -1.552 -10.609 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.227 4.227 3 C 0.095 3.905 4 N -0.159 5.159 5 C -0.501 4.501 6 H 0.123 0.877 7 C -0.176 4.176 8 N -0.509 5.509 9 Si 0.778 3.222 10 H -0.157 1.157 11 H -0.186 1.186 12 H -0.196 1.196 13 C 0.326 3.674 14 O -0.510 6.510 15 C -0.399 4.399 16 C -0.059 4.059 17 C -0.786 4.786 18 S 2.706 3.294 19 C -0.777 4.777 20 O -0.967 6.967 21 O -0.981 6.981 22 C -0.335 4.335 23 S 0.628 5.372 24 H 0.272 0.728 25 H 0.140 0.860 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.164 0.836 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.571 -2.384 -10.218 11.445 hybrid contribution 0.161 0.809 0.507 0.968 sum 4.732 -1.576 -9.711 10.917 Atomic orbital electron populations 1.25664 0.96515 1.01323 0.98781 1.24455 0.96072 1.00369 1.01813 1.18352 0.82851 1.01842 0.87405 1.43321 1.55689 1.07089 1.09791 1.19674 1.28118 0.90244 1.12048 0.87679 1.26471 0.93301 1.03401 0.94441 1.69776 1.29340 1.39989 1.11815 0.85360 0.79531 0.76568 0.80711 1.15676 1.18628 1.19645 1.17860 0.79599 0.84623 0.85293 1.90639 1.57743 1.21711 1.80930 1.24721 1.16451 1.00905 0.97856 1.20239 0.95814 1.00204 0.89609 1.29248 1.21766 1.07962 1.19608 1.04408 0.79101 0.73532 0.72353 1.30010 1.19102 1.14745 1.13839 1.93507 1.87010 1.61629 1.54584 1.93515 1.61164 1.57482 1.85918 1.26855 0.98642 0.98588 1.09401 1.84199 1.52693 1.06481 0.93806 0.72818 0.86044 0.91863 0.90487 0.83627 0.82495 0.82293 0.83698 0.77582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.75 19.25 74.32 1.43 -6.32 16 2 C -0.23 -10.34 13.62 31.13 0.42 -9.91 16 3 C 0.22 10.80 5.35 84.57 0.45 11.25 16 4 N -0.44 -22.43 2.44 -650.17 -1.59 -24.02 16 5 C -0.37 -17.29 6.72 84.09 0.56 -16.73 16 6 H 0.11 4.65 5.50 -14.80 -0.08 4.57 16 7 C 0.03 1.45 5.34 84.94 0.45 1.91 16 8 N -0.88 -42.11 11.25 21.67 0.24 -41.87 16 9 Si 0.96 33.54 29.56 68.60 2.03 35.57 16 10 H -0.23 -7.38 7.11 99.48 0.71 -6.67 16 11 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 12 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 13 C 0.54 27.75 7.54 86.38 0.65 28.40 16 14 O -0.62 -35.38 16.49 -4.50 -0.07 -35.45 16 15 C -0.28 -12.16 6.30 24.07 0.15 -12.01 16 16 C -0.03 -1.04 9.48 21.74 0.21 -0.83 16 17 C -0.69 -20.97 5.55 21.08 0.12 -20.86 16 18 S 2.53 60.55 5.85 -56.49 -0.33 60.22 16 19 C -0.62 -7.53 10.79 113.37 1.22 -6.30 16 20 O -0.97 -27.18 17.46 -127.65 -2.23 -29.41 16 21 O -0.98 -31.91 17.47 -127.65 -2.23 -34.14 16 22 C -0.19 -5.49 10.34 66.82 0.69 -4.80 16 23 S 0.36 12.34 18.40 -56.49 -1.04 11.30 16 24 H 0.26 6.64 7.80 -4.42 -0.03 6.61 16 25 H 0.12 6.12 5.83 -2.39 -0.01 6.11 16 26 H 0.06 3.26 7.53 -2.38 -0.02 3.24 16 27 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 28 H 0.15 5.74 7.93 -2.91 -0.02 5.72 16 29 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.21 4.17 7.93 -2.91 -0.02 4.15 16 Total: -1.00 -73.73 315.78 2.24 -71.49 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.10 Total: 22.52 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 6.37 Total: -36.20 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -1.34 Total: -65.89 kcal Atomic # 8 Polarization: -94.47 SS G_CDS: -4.53 Total: -99.00 kcal Atomic # 14 Polarization: 33.54 SS G_CDS: 2.03 Total: 35.57 kcal Atomic # 16 Polarization: 72.89 SS G_CDS: -1.37 Total: 71.52 kcal Total: -73.73 2.24 -71.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.191 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds