Wall clock time and date at job start Tue Mar 31 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00311 * 2 1 4 4 H 1.08006 * 119.99945 * 202.27117 * 3 2 1 5 5 C 1.38813 * 120.00004 * 22.26610 * 3 2 1 6 6 N 1.31616 * 119.99808 * 11.16814 * 5 3 2 7 7 Si 1.86798 * 119.99936 * 191.16790 * 5 3 2 8 8 H 1.48494 * 109.47355 * 60.00091 * 7 5 3 9 9 H 1.48507 * 109.46948 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47364 * 300.00237 * 7 5 3 11 11 S 1.65603 * 119.99733 * 180.02562 * 2 1 3 12 12 O 1.42101 * 106.40271 * 156.45609 * 11 2 1 13 13 O 1.42097 * 106.40188 * 23.53483 * 11 2 1 14 14 C 1.76198 * 107.21840 * 269.99370 * 11 2 1 15 15 C 1.35317 * 126.12832 * 330.29721 * 14 11 2 16 16 C 1.39863 * 107.91966 * 180.14239 * 15 14 11 17 17 C 1.50705 * 125.89823 * 179.86070 * 16 15 14 18 18 F 1.39897 * 109.47302 * 184.71455 * 17 16 15 19 19 F 1.39895 * 109.47073 * 64.71616 * 17 16 15 20 20 F 1.39903 * 109.47134 * 304.71785 * 17 16 15 21 21 N 1.30834 * 108.20515 * 359.59823 * 16 15 14 22 22 N 1.34952 * 126.12696 * 149.99343 * 14 11 2 23 23 C 1.46502 * 126.03404 * 0.02562 * 22 14 11 24 24 H 1.09005 * 109.46810 * 274.23547 * 1 2 3 25 25 H 1.09001 * 109.47091 * 34.22512 * 1 2 3 26 26 H 1.08990 * 109.47761 * 154.23306 * 1 2 3 27 27 H 0.96999 * 119.99736 * 179.97438 * 6 5 3 28 28 H 1.07999 * 126.03761 * 0.02562 * 15 14 11 29 29 H 1.09004 * 109.46770 * 269.96725 * 23 22 14 30 30 H 1.08997 * 109.47282 * 29.96739 * 23 22 14 31 31 H 1.08998 * 109.46679 * 149.97027 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1693 1.2207 -0.3545 5 6 1.5333 2.3432 0.4555 6 7 0.3812 2.2701 1.0876 7 14 2.3391 4.0044 0.1713 8 1 2.4997 4.2336 -1.2870 9 1 1.4863 5.0736 0.7501 10 1 3.6720 4.0264 0.8256 11 16 2.2929 -1.4342 -0.0006 12 8 3.5758 -1.1567 -0.5450 13 8 1.4112 -2.4063 -0.5454 14 6 2.5538 -1.8866 1.6822 15 6 2.6877 -1.0354 2.7256 16 6 2.8814 -1.7987 3.8815 17 6 3.0790 -1.2584 5.2744 18 9 3.3473 -2.3152 6.1508 19 9 1.9184 -0.5945 5.6860 20 9 4.1546 -0.3638 5.2794 21 7 2.8559 -3.0629 3.5455 22 7 2.6503 -3.1441 2.1622 23 6 2.5571 -4.3765 1.3755 24 1 -0.3633 0.0759 1.0249 25 1 -0.3633 0.8497 -0.5780 26 1 -0.3634 -0.9254 -0.4467 27 1 -0.0493 3.0788 1.4062 28 1 2.6531 0.0428 2.6745 29 1 1.5178 -4.7024 1.3327 30 1 2.9216 -4.1910 0.3652 31 1 3.1623 -5.1528 1.8434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530155004.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:11 Heat of formation + Delta-G solvation = -147.763459 kcal Electronic energy + Delta-G solvation = -25086.300271 eV Core-core repulsion = 20695.976682 eV Total energy + Delta-G solvation = -4390.323589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.33299 -48.83774 -48.83438 -42.48505 -37.76207 -37.64969 -36.38761 -34.88687 -33.52608 -31.70545 -29.51075 -28.43045 -26.31276 -25.44040 -23.28225 -22.28226 -20.45212 -19.71866 -19.63203 -19.49435 -18.80997 -18.28978 -17.69332 -16.94092 -16.56001 -16.35284 -16.08749 -15.67580 -15.60347 -15.25109 -15.15946 -15.08386 -14.97330 -14.94804 -14.62205 -13.98286 -13.92733 -13.68478 -13.48592 -13.23648 -12.99709 -12.68050 -12.65116 -12.57534 -12.36359 -12.17039 -11.99885 -11.84891 -11.16868 -11.03895 -10.12306 -10.05492 -8.56224 -6.05002 -0.29180 0.11198 0.80023 0.93998 1.56939 1.60871 1.63164 1.67573 2.19952 2.43436 2.48836 2.77150 2.83299 3.07294 3.18724 3.54119 3.98303 4.09431 4.13703 4.23888 4.41016 4.42536 4.61631 4.99922 5.00899 5.21399 5.23282 5.48644 5.51772 5.95666 6.27391 6.54834 7.06399 8.36130 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.007041 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.478500 B = 3975.729518 C = 5464.270131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.777 5.777 3 C -0.229 4.229 4 H 0.121 0.879 5 C 0.007 3.993 6 N -0.815 5.815 7 Si 0.992 3.008 8 H -0.260 1.260 9 H -0.268 1.268 10 H -0.262 1.262 11 S 2.467 3.533 12 O -1.007 7.007 13 O -1.009 7.009 14 C -0.451 4.451 15 C -0.153 4.153 16 C -0.052 4.052 17 C 0.570 3.430 18 F -0.166 7.166 19 F -0.164 7.164 20 F -0.163 7.163 21 N -0.247 5.247 22 N -0.307 5.307 23 C 0.078 3.922 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.294 0.706 28 H 0.168 0.832 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -1.596 3.892 4.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.598 5.598 3 C -0.387 4.387 4 H 0.138 0.862 5 C -0.209 4.209 6 N -0.454 5.454 7 Si 0.812 3.188 8 H -0.184 1.184 9 H -0.192 1.192 10 H -0.186 1.186 11 S 2.564 3.436 12 O -0.995 6.995 13 O -0.998 6.998 14 C -0.649 4.649 15 C -0.183 4.183 16 C -0.216 4.216 17 C 0.513 3.487 18 F -0.147 7.147 19 F -0.145 7.145 20 F -0.144 7.144 21 N -0.074 5.074 22 N -0.091 5.091 23 C -0.061 4.061 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.185 0.815 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.643 -3.822 3.729 5.378 hybrid contribution 0.225 1.342 0.769 1.563 sum 0.868 -2.480 4.498 5.210 Atomic orbital electron populations 1.21475 0.77817 1.01060 1.02165 1.54916 1.14035 1.18806 1.72084 1.20661 1.02004 0.83076 1.32919 0.86167 1.26684 0.96498 1.04136 0.93555 1.70127 1.14490 1.32931 1.27825 0.84972 0.78756 0.75213 0.79820 1.18431 1.19239 1.18638 1.16886 0.73647 0.75499 0.77606 1.93297 1.43401 1.84574 1.78278 1.93263 1.64675 1.62766 1.79095 1.36563 1.09643 0.89144 1.29517 1.21216 1.06867 1.01435 0.88792 1.22353 1.10497 0.93527 0.95243 1.16545 0.74384 0.75434 0.82308 1.93209 1.93722 1.56767 1.71012 1.93242 1.49073 1.81178 1.91051 1.93237 1.55847 1.68684 1.96637 1.76949 1.19196 1.17788 0.93505 1.48655 1.50300 1.06367 1.03824 1.22553 1.06452 0.82655 0.94452 0.92954 0.89956 0.92399 0.89569 0.81489 0.87590 0.89222 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.87 8.92 127.77 1.14 6.01 16 2 N -0.78 -34.34 3.24 -364.90 -1.18 -35.53 16 3 C -0.23 -10.11 9.45 84.03 0.79 -9.31 16 4 H 0.12 5.34 7.16 -2.91 -0.02 5.32 16 5 C 0.01 0.29 5.13 84.86 0.44 0.73 16 6 N -0.82 -33.61 10.57 21.65 0.23 -33.38 16 7 Si 0.99 32.20 29.57 68.60 2.03 34.22 16 8 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 9 H -0.27 -8.32 7.11 99.48 0.71 -7.62 16 10 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 11 S 2.47 111.56 5.32 -56.49 -0.30 111.26 16 12 O -1.01 -50.73 16.81 -128.00 -2.15 -52.88 16 13 O -1.01 -46.18 15.23 -128.00 -1.95 -48.13 16 14 C -0.45 -19.41 6.90 83.54 0.58 -18.84 16 15 C -0.15 -6.43 10.60 21.99 0.23 -6.19 16 16 C -0.05 -2.02 6.51 43.10 0.28 -1.73 16 17 C 0.57 19.13 3.51 71.24 0.25 19.38 16 18 F -0.17 -5.28 17.14 44.97 0.77 -4.51 16 19 F -0.16 -5.40 17.30 44.97 0.78 -4.63 16 20 F -0.16 -5.27 17.30 44.97 0.78 -4.49 16 21 N -0.25 -9.70 12.35 -47.39 -0.59 -10.29 16 22 N -0.31 -12.04 4.01 -366.70 -1.47 -13.51 16 23 C 0.08 2.32 10.64 127.77 1.36 3.68 16 24 H 0.05 2.15 7.42 -2.38 -0.02 2.13 16 25 H 0.08 3.26 7.18 -2.39 -0.02 3.24 16 26 H 0.06 2.22 6.93 -2.39 -0.02 2.20 16 27 H 0.29 11.10 8.31 -92.71 -0.77 10.33 16 28 H 0.17 6.92 8.06 -2.91 -0.02 6.90 16 29 H 0.11 2.82 8.14 -2.39 -0.02 2.81 16 30 H 0.09 2.72 7.21 -2.39 -0.02 2.70 16 31 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -55.93 300.36 3.21 -52.73 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.20 Total: 15.41 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.07 Total: -6.28 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.01 Total: -92.70 kcal Atomic # 8 Polarization: -96.92 SS G_CDS: -4.10 Total: -101.02 kcal Atomic # 9 Polarization: -15.96 SS G_CDS: 2.33 Total: -13.63 kcal Atomic # 14 Polarization: 32.20 SS G_CDS: 2.03 Total: 34.22 kcal Atomic # 16 Polarization: 111.56 SS G_CDS: -0.30 Total: 111.26 kcal Total: -55.93 3.21 -52.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530155004.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.037 kcal (2) G-P(sol) polarization free energy of solvation -55.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds