Wall clock time and date at job start Tue Mar 31 2020 04:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47031 * 2 1 4 4 C 1.36941 * 120.00481 * 286.65428 * 3 2 1 5 5 H 1.07994 * 120.00260 * 144.27201 * 4 3 2 6 6 C 1.38815 * 119.99594 * 324.27425 * 4 3 2 7 7 N 1.31618 * 119.99975 * 155.42451 * 6 4 3 8 8 Si 1.86795 * 120.00093 * 335.42279 * 6 4 3 9 9 H 1.48507 * 109.47000 * 95.38911 * 8 6 4 10 10 H 1.48501 * 109.47243 * 215.38672 * 8 6 4 11 11 H 1.48497 * 109.47353 * 335.39169 * 8 6 4 12 12 S 1.65602 * 119.99857 * 106.65310 * 3 2 1 13 13 O 1.42095 * 106.40329 * 340.84043 * 12 3 2 14 14 O 1.42104 * 106.40132 * 207.92094 * 12 3 2 15 15 C 1.76198 * 107.21731 * 94.38040 * 12 3 2 16 16 C 1.35316 * 126.04004 * 106.33729 * 15 12 3 17 17 N 1.34953 * 107.74860 * 179.97438 * 16 15 12 18 18 H 0.96997 * 126.04213 * 179.97438 * 17 16 15 19 19 N 1.40085 * 107.92161 * 0.24062 * 17 16 15 20 20 C 1.30839 * 108.20458 * 359.59130 * 19 17 16 21 21 C 1.50705 * 125.89701 * 180.15294 * 20 19 17 22 22 F 1.39905 * 109.46520 * 252.42027 * 21 20 19 23 23 F 1.39901 * 109.47288 * 12.41612 * 21 20 19 24 24 F 1.39895 * 109.47309 * 132.42023 * 21 20 19 25 25 H 1.08995 * 109.47306 * 305.08151 * 1 2 3 26 26 H 1.08997 * 109.47633 * 65.09122 * 1 2 3 27 27 H 1.09008 * 109.46835 * 185.08663 * 1 2 3 28 28 H 1.09003 * 109.47265 * 240.00280 * 2 1 3 29 29 H 1.09004 * 109.47454 * 120.00217 * 2 1 3 30 30 H 0.97000 * 120.00477 * 179.97438 * 7 6 4 31 31 H 1.07997 * 126.12843 * 359.96999 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.9261 2.1401 -1.1361 5 1 1.7182 3.1974 -1.0639 6 6 2.0998 1.5503 -2.3807 7 7 1.5618 2.0984 -3.4496 8 14 3.0973 -0.0212 -2.5385 9 1 2.1837 -1.1918 -2.5144 10 1 3.8472 -0.0049 -3.8201 11 1 4.0536 -0.1163 -1.4065 12 16 2.6817 2.0248 1.3740 13 8 2.2406 1.2108 2.4519 14 8 2.4509 3.4256 1.3129 15 6 4.4262 1.8027 1.2643 16 6 5.3374 2.7701 1.0095 17 7 6.5585 2.1954 1.0097 18 1 7.4022 2.6479 0.8543 19 7 6.3916 0.8287 1.2678 20 6 5.1139 0.5955 1.4257 21 6 4.4902 -0.7436 1.7239 22 9 3.8246 -1.2117 0.5859 23 9 5.4895 -1.6530 2.0868 24 9 3.5777 -0.6092 2.7758 25 1 -0.3633 0.5906 0.8409 26 1 -0.3634 0.4328 -0.9320 27 1 -0.3633 -1.0237 0.0911 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6835 1.6865 -4.3193 31 1 5.1256 3.8149 0.8368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590590995.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:27 Heat of formation + Delta-G solvation = -122.756563 kcal Electronic energy + Delta-G solvation = -26560.956609 eV Core-core repulsion = 22171.717400 eV Total energy + Delta-G solvation = -4389.239209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.90464 -47.48750 -47.25977 -41.24758 -36.35339 -35.89469 -34.51995 -32.40412 -32.37482 -30.27483 -29.51002 -26.50616 -24.67462 -22.36705 -22.19670 -21.08984 -19.12512 -18.25025 -18.18730 -17.96470 -17.03425 -16.88748 -16.50210 -15.80565 -15.32891 -14.78034 -14.38763 -14.16572 -14.13556 -13.82455 -13.58269 -13.50471 -13.40258 -13.29974 -13.06227 -12.81679 -12.35095 -12.12988 -11.59017 -11.46484 -11.02504 -10.97506 -10.84311 -10.75901 -10.56874 -10.21631 -10.14431 -10.01984 -9.86362 -9.18327 -9.01514 -8.23805 -6.77893 -4.18233 1.51795 1.58333 2.09377 2.27232 2.99883 3.08982 3.15590 3.22922 3.83920 3.96044 4.13003 4.19929 4.56069 4.65564 4.78431 4.94033 5.16428 5.44154 5.74032 5.89438 6.01500 6.03405 6.14020 6.37891 6.66237 6.88308 6.99394 7.11096 7.20376 7.34123 8.14296 8.77428 8.86780 10.27296 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.008958 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.102451 B = 3124.969326 C = 3216.919974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.819 5.819 4 C -0.247 4.247 5 H 0.125 0.875 6 C 0.071 3.929 7 N -0.819 5.819 8 Si 0.871 3.129 9 H -0.265 1.265 10 H -0.290 1.290 11 H -0.249 1.249 12 S 2.545 3.455 13 O -0.986 6.986 14 O -0.975 6.975 15 C -0.753 4.753 16 C 0.172 3.828 17 N -0.458 5.458 18 H 0.444 0.556 19 N -0.246 5.246 20 C 0.060 3.940 21 C 0.534 3.466 22 F -0.161 7.161 23 F -0.173 7.173 24 F -0.131 7.131 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.282 0.718 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.553 -2.822 4.390 8.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.644 5.644 4 C -0.397 4.397 5 H 0.142 0.858 6 C -0.146 4.146 7 N -0.455 5.455 8 Si 0.698 3.302 9 H -0.192 1.192 10 H -0.217 1.217 11 H -0.172 1.172 12 S 2.643 3.357 13 O -0.975 6.975 14 O -0.965 6.965 15 C -0.841 4.841 16 C 0.022 3.978 17 N -0.167 5.167 18 H 0.290 0.710 19 N -0.070 5.070 20 C -0.110 4.110 21 C 0.478 3.522 22 F -0.142 7.142 23 F -0.154 7.154 24 F -0.112 7.112 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.438 -2.986 5.229 9.570 hybrid contribution 1.089 -0.497 -0.745 1.410 sum 8.527 -3.484 4.484 10.245 Atomic orbital electron populations 1.21967 0.95240 1.00657 1.03248 1.21512 0.95547 0.83181 1.01195 1.54072 1.59992 1.20760 1.29549 1.19348 1.42106 0.96325 0.81875 0.85787 1.25765 0.95024 0.98570 0.95221 1.69855 1.36016 1.39736 0.99905 0.87052 0.81832 0.82854 0.78422 1.19186 1.21693 1.17235 1.11136 0.72946 0.75001 0.76640 1.93421 1.80142 1.68740 1.55236 1.93366 1.84227 1.31612 1.87325 1.33021 1.31928 0.95897 1.23213 1.22608 0.83084 0.99803 0.92323 1.46699 1.09041 1.05820 1.55095 0.71014 1.77148 1.16263 0.93451 1.20105 1.21482 0.92667 0.93539 1.03346 1.17208 0.76823 0.82344 0.75860 1.93295 1.80727 1.89491 1.50726 1.93199 1.61239 1.69170 1.91781 1.93451 1.66033 1.95467 1.56275 0.92353 0.91256 0.92860 0.93176 0.90389 0.90760 0.78052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.02 37.15 0.37 -2.47 16 2 C 0.11 2.32 4.02 -4.05 -0.02 2.30 16 3 N -0.82 -18.52 2.56 -59.91 -0.15 -18.67 16 4 C -0.25 -6.01 9.34 -15.06 -0.14 -6.15 16 5 H 0.12 3.23 7.61 -52.49 -0.40 2.83 16 6 C 0.07 1.71 5.31 -17.43 -0.09 1.62 16 7 N -0.82 -20.54 13.97 55.49 0.78 -19.76 16 8 Si 0.87 19.08 24.75 -169.99 -4.21 14.87 16 9 H -0.27 -5.60 6.72 56.52 0.38 -5.22 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.25 -5.41 5.60 56.52 0.32 -5.10 16 12 S 2.54 56.62 5.60 -107.50 -0.60 56.02 16 13 O -0.99 -22.81 13.38 -57.17 -0.76 -23.57 16 14 O -0.98 -23.36 16.75 -57.17 -0.96 -24.32 16 15 C -0.75 -14.84 6.14 -40.01 -0.25 -15.08 16 16 C 0.17 2.71 11.63 -17.22 -0.20 2.51 16 17 N -0.46 -6.36 7.36 30.45 0.22 -6.14 16 18 H 0.44 3.94 8.96 -182.61 -1.64 2.30 16 19 N -0.25 -4.35 12.50 33.67 0.42 -3.93 16 20 C 0.06 1.17 6.53 -82.40 -0.54 0.64 16 21 C 0.53 10.22 3.24 36.01 0.12 10.33 16 22 F -0.16 -3.12 12.04 2.25 0.03 -3.09 16 23 F -0.17 -3.02 17.16 2.25 0.04 -2.98 16 24 F -0.13 -2.60 13.51 2.25 0.03 -2.57 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.05 1.06 2.69 -51.93 -0.14 0.92 16 29 H 0.08 1.56 4.77 -51.93 -0.25 1.31 16 30 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.20 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -29.82 280.01 -5.05 -34.87 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.35 Total: 1.35 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.74 Total: -6.30 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 1.27 Total: -48.49 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.72 Total: -47.89 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 0.10 Total: -8.64 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.21 Total: 14.87 kcal Atomic # 16 Polarization: 56.62 SS G_CDS: -0.60 Total: 56.02 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.82 -5.05 -34.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590590995.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.891 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds