Wall clock time and date at job start Tue Mar 31 2020 04:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47031 * 2 1 4 4 C 1.36941 * 120.00481 * 286.65428 * 3 2 1 5 5 H 1.07994 * 120.00260 * 144.27201 * 4 3 2 6 6 C 1.38815 * 119.99594 * 324.27425 * 4 3 2 7 7 N 1.31618 * 119.99975 * 155.42451 * 6 4 3 8 8 Si 1.86795 * 120.00093 * 335.42279 * 6 4 3 9 9 H 1.48507 * 109.47000 * 95.38911 * 8 6 4 10 10 H 1.48501 * 109.47243 * 215.38672 * 8 6 4 11 11 H 1.48497 * 109.47353 * 335.39169 * 8 6 4 12 12 S 1.65602 * 119.99857 * 106.65310 * 3 2 1 13 13 O 1.42095 * 106.40329 * 340.84043 * 12 3 2 14 14 O 1.42104 * 106.40132 * 207.92094 * 12 3 2 15 15 C 1.76198 * 107.21731 * 94.38040 * 12 3 2 16 16 C 1.35316 * 126.04004 * 106.33729 * 15 12 3 17 17 N 1.34953 * 107.74860 * 179.97438 * 16 15 12 18 18 H 0.96997 * 126.04213 * 179.97438 * 17 16 15 19 19 N 1.40085 * 107.92161 * 0.24062 * 17 16 15 20 20 C 1.30839 * 108.20458 * 359.59130 * 19 17 16 21 21 C 1.50705 * 125.89701 * 180.15294 * 20 19 17 22 22 F 1.39905 * 109.46520 * 252.42027 * 21 20 19 23 23 F 1.39901 * 109.47288 * 12.41612 * 21 20 19 24 24 F 1.39895 * 109.47309 * 132.42023 * 21 20 19 25 25 H 1.08995 * 109.47306 * 305.08151 * 1 2 3 26 26 H 1.08997 * 109.47633 * 65.09122 * 1 2 3 27 27 H 1.09008 * 109.46835 * 185.08663 * 1 2 3 28 28 H 1.09003 * 109.47265 * 240.00280 * 2 1 3 29 29 H 1.09004 * 109.47454 * 120.00217 * 2 1 3 30 30 H 0.97000 * 120.00477 * 179.97438 * 7 6 4 31 31 H 1.07997 * 126.12843 * 359.96999 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.9261 2.1401 -1.1361 5 1 1.7182 3.1974 -1.0639 6 6 2.0998 1.5503 -2.3807 7 7 1.5618 2.0984 -3.4496 8 14 3.0973 -0.0212 -2.5385 9 1 2.1837 -1.1918 -2.5144 10 1 3.8472 -0.0049 -3.8201 11 1 4.0536 -0.1163 -1.4065 12 16 2.6817 2.0248 1.3740 13 8 2.2406 1.2108 2.4519 14 8 2.4509 3.4256 1.3129 15 6 4.4262 1.8027 1.2643 16 6 5.3374 2.7701 1.0095 17 7 6.5585 2.1954 1.0097 18 1 7.4022 2.6479 0.8543 19 7 6.3916 0.8287 1.2678 20 6 5.1139 0.5955 1.4257 21 6 4.4902 -0.7436 1.7239 22 9 3.8246 -1.2117 0.5859 23 9 5.4895 -1.6530 2.0868 24 9 3.5777 -0.6092 2.7758 25 1 -0.3633 0.5906 0.8409 26 1 -0.3634 0.4328 -0.9320 27 1 -0.3633 -1.0237 0.0911 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6835 1.6865 -4.3193 31 1 5.1256 3.8149 0.8368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590590995.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:26 Heat of formation + Delta-G solvation = -145.649734 kcal Electronic energy + Delta-G solvation = -26561.949331 eV Core-core repulsion = 22171.717400 eV Total energy + Delta-G solvation = -4390.231931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.38073 -48.94383 -48.76065 -42.62796 -38.06985 -37.79838 -36.44811 -34.12659 -33.77690 -31.71486 -31.14221 -27.94564 -26.45521 -24.00333 -23.64796 -22.56599 -20.62227 -19.94560 -19.72693 -19.43011 -18.66942 -18.40542 -18.24958 -17.50583 -16.97269 -16.18839 -16.04386 -15.74857 -15.60875 -15.30603 -15.10103 -15.05311 -14.90980 -14.85692 -14.79636 -14.50221 -14.00464 -13.58859 -13.13069 -13.08885 -12.80425 -12.67964 -12.63466 -12.60448 -12.31727 -11.93715 -11.84119 -11.57555 -11.32623 -10.78856 -10.61949 -10.00868 -8.55298 -6.05001 -0.21270 0.21552 0.59224 0.92032 1.28083 1.39791 1.49242 1.74996 2.21452 2.37670 2.48243 2.68892 2.83144 3.04892 3.20475 3.33466 3.91503 3.95101 4.11378 4.30026 4.43416 4.57944 4.58525 4.82540 5.10591 5.30279 5.54060 5.61365 5.68109 6.07743 6.27099 6.99653 7.08117 8.55347 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.008958 C = 0.008702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.102451 B = 3124.969326 C = 3216.919974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.101 3.899 3 N -0.837 5.837 4 C -0.275 4.275 5 H 0.093 0.907 6 C 0.048 3.952 7 N -0.868 5.868 8 Si 0.906 3.094 9 H -0.256 1.256 10 H -0.294 1.294 11 H -0.245 1.245 12 S 2.601 3.399 13 O -0.992 6.992 14 O -0.992 6.992 15 C -0.795 4.795 16 C 0.199 3.801 17 N -0.428 5.428 18 H 0.470 0.530 19 N -0.249 5.249 20 C 0.047 3.953 21 C 0.532 3.468 22 F -0.164 7.164 23 F -0.163 7.163 24 F -0.138 7.138 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.284 0.716 31 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 -3.161 5.711 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 N -0.664 5.664 4 C -0.418 4.418 5 H 0.110 0.890 6 C -0.164 4.164 7 N -0.506 5.506 8 Si 0.731 3.269 9 H -0.182 1.182 10 H -0.221 1.221 11 H -0.169 1.169 12 S 2.699 3.301 13 O -0.981 6.981 14 O -0.983 6.983 15 C -0.888 4.888 16 C 0.047 3.953 17 N -0.138 5.138 18 H 0.321 0.679 19 N -0.073 5.073 20 C -0.124 4.124 21 C 0.475 3.525 22 F -0.146 7.146 23 F -0.144 7.144 24 F -0.119 7.119 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 9.309 -3.318 6.452 11.802 hybrid contribution 0.699 -0.341 -0.822 1.132 sum 10.008 -3.659 5.630 12.052 Atomic orbital electron populations 1.21979 0.94138 1.02599 1.02358 1.21723 0.96747 0.82508 1.01414 1.53652 1.63001 1.21297 1.28470 1.18824 1.45227 0.94986 0.82715 0.88968 1.25982 0.95308 1.00298 0.94763 1.69913 1.38377 1.41827 1.00450 0.86516 0.81119 0.81207 0.78016 1.18206 1.22140 1.16859 1.07505 0.73436 0.73969 0.75152 1.93446 1.80963 1.69098 1.54634 1.93376 1.85110 1.32306 1.87480 1.32391 1.30567 0.97858 1.27962 1.23087 0.82708 1.00580 0.88957 1.46664 1.09876 1.04564 1.52730 0.67908 1.77104 1.15249 0.95295 1.19686 1.21500 0.93236 0.93383 1.04256 1.17252 0.76895 0.82732 0.75625 1.93285 1.80854 1.89557 1.50877 1.93215 1.60723 1.68827 1.91668 1.93432 1.66386 1.95545 1.56582 0.92542 0.92733 0.89623 0.93285 0.89596 0.90627 0.74519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.02 71.98 0.72 -4.85 16 2 C 0.10 4.13 4.02 86.38 0.35 4.48 16 3 N -0.84 -37.57 2.56 -343.46 -0.88 -38.44 16 4 C -0.27 -13.62 9.34 84.03 0.78 -12.84 16 5 H 0.09 5.03 7.61 -2.91 -0.02 5.01 16 6 C 0.05 2.38 5.31 84.86 0.45 2.84 16 7 N -0.87 -45.17 13.97 21.65 0.30 -44.87 16 8 Si 0.91 38.96 24.75 68.60 1.70 40.66 16 9 H -0.26 -10.47 6.72 99.48 0.67 -9.81 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.25 -10.27 5.60 99.48 0.56 -9.71 16 12 S 2.60 111.89 5.60 -56.49 -0.32 111.58 16 13 O -0.99 -44.13 13.38 -128.00 -1.71 -45.84 16 14 O -0.99 -46.27 16.75 -128.00 -2.14 -48.41 16 15 C -0.79 -29.09 6.14 21.99 0.14 -28.96 16 16 C 0.20 5.46 11.63 83.54 0.97 6.43 16 17 N -0.43 -9.94 7.36 -57.59 -0.42 -10.37 16 18 H 0.47 5.93 8.96 -213.33 -1.91 4.02 16 19 N -0.25 -7.91 12.50 -47.38 -0.59 -8.50 16 20 C 0.05 1.69 6.53 43.10 0.28 1.97 16 21 C 0.53 19.19 3.24 71.24 0.23 19.42 16 22 F -0.16 -6.06 12.04 44.97 0.54 -5.52 16 23 F -0.16 -5.34 17.16 44.97 0.77 -4.57 16 24 F -0.14 -5.22 13.51 44.97 0.61 -4.62 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 27 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 28 H 0.05 2.03 2.69 -2.39 -0.01 2.02 16 29 H 0.09 3.32 4.77 -2.39 -0.01 3.31 16 30 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.24 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -64.10 280.01 0.90 -63.20 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -0.87 Total: 7.21 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 3.92 Total: -11.51 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -1.59 Total: -102.18 kcal Atomic # 8 Polarization: -90.39 SS G_CDS: -3.86 Total: -94.25 kcal Atomic # 9 Polarization: -16.63 SS G_CDS: 1.92 Total: -14.70 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.70 Total: 40.66 kcal Atomic # 16 Polarization: 111.89 SS G_CDS: -0.32 Total: 111.58 kcal Total: -64.10 0.90 -63.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590590995.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.450 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds