Wall clock time and date at job start Tue Mar 31 2020 04:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99771 * 2 1 4 4 H 1.48497 * 109.47157 * 270.65355 * 3 2 1 5 5 H 1.48502 * 109.47094 * 30.65335 * 3 2 1 6 6 H 1.48500 * 109.47057 * 150.65414 * 3 2 1 7 7 C 1.38811 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99410 * 342.60120 * 7 2 1 9 9 N 1.36928 * 120.00175 * 162.32009 * 7 2 1 10 10 C 1.46499 * 120.00258 * 307.43609 * 9 7 2 11 11 C 1.53001 * 117.49437 * 1.98870 * 10 9 7 12 12 C 1.52999 * 60.00225 * 252.50859 * 11 10 9 13 13 S 1.65602 * 119.99941 * 127.43396 * 9 7 2 14 14 O 1.42101 * 106.40129 * 207.38413 * 13 9 7 15 15 O 1.42104 * 106.40238 * 340.30607 * 13 9 7 16 16 C 1.76201 * 107.21741 * 93.84613 * 13 9 7 17 17 C 1.38666 * 120.42029 * 345.14451 * 16 13 9 18 18 C 1.38630 * 118.42140 * 179.76555 * 17 16 13 19 19 C 1.38225 * 119.15868 * 0.52907 * 18 17 16 20 20 N 1.31852 * 120.76409 * 359.71151 * 19 18 17 21 21 C 1.31881 * 121.72618 * 0.02562 * 20 19 18 22 22 N 1.48017 * 119.61565 * 179.97438 * 21 20 19 23 23 O 1.21798 * 119.99897 * 209.33966 * 22 21 20 24 24 O 1.21799 * 120.00132 * 29.34257 * 22 21 20 25 25 H 0.96995 * 120.00465 * 0.02562 * 1 2 3 26 26 H 1.09000 * 115.55259 * 147.69649 * 10 9 7 27 27 H 1.08993 * 117.50213 * 0.02562 * 11 10 9 28 28 H 1.09006 * 117.49761 * 145.02452 * 11 10 9 29 29 H 1.08997 * 117.50212 * 252.51406 * 12 11 10 30 30 H 1.09001 * 117.51694 * 107.47852 * 12 11 10 31 31 H 1.08004 * 120.78690 * 0.02562 * 17 16 13 32 32 H 1.07995 * 120.41856 * 180.24383 * 18 17 16 33 33 H 1.07998 * 119.61385 * 179.72892 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4838 2.0544 -1.3999 5 1 1.4545 2.6486 0.7138 6 1 3.5545 1.4363 0.6861 7 6 2.0103 -1.2021 0.0005 8 1 1.5074 -2.1159 0.2806 9 7 3.3311 -1.2302 -0.3596 10 6 3.7570 -0.6366 -1.6294 11 6 2.6860 0.0404 -2.4870 12 6 3.2742 -1.3045 -2.9186 13 16 4.4471 -1.9352 0.6404 14 8 5.6848 -1.2872 0.3804 15 8 3.8534 -1.9880 1.9303 16 6 4.6393 -3.6052 0.1123 17 6 3.7149 -4.1810 -0.7460 18 6 3.9091 -5.4961 -1.1390 19 6 5.0040 -6.1884 -0.6568 20 7 5.8603 -5.6101 0.1623 21 6 5.7100 -4.3595 0.5529 22 7 6.6994 -3.7570 1.4743 23 8 6.3573 -2.8787 2.2457 24 8 7.8558 -4.1393 1.4609 25 1 -0.4850 0.8400 -0.0004 26 1 4.7554 -0.1993 -1.6326 27 1 1.6647 0.0445 -2.1063 28 1 2.9797 0.9235 -3.0546 29 1 3.9548 -1.3062 -3.7699 30 1 2.6401 -2.1858 -2.8218 31 1 2.8660 -3.6168 -1.1033 32 1 3.2112 -5.9752 -1.8097 33 1 5.1601 -7.2147 -0.9546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610261887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:49 Heat of formation + Delta-G solvation = 28.829832 kcal Electronic energy + Delta-G solvation = -25201.701079 eV Core-core repulsion = 21360.891890 eV Total energy + Delta-G solvation = -3840.809189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30430 -40.43595 -37.82378 -36.64096 -36.29217 -34.91298 -33.36643 -33.16962 -32.45439 -31.63764 -27.24523 -25.02891 -24.59656 -23.26036 -22.09078 -21.10230 -19.83187 -19.01690 -18.70334 -18.00671 -17.85317 -17.19835 -16.90624 -16.19415 -15.79761 -15.33561 -14.85686 -14.42904 -14.09745 -13.95828 -13.67595 -13.28503 -13.12922 -12.09602 -11.71746 -11.65393 -11.60982 -11.43607 -11.29878 -11.16873 -11.02219 -10.96534 -10.92475 -10.71734 -10.61272 -10.26102 -10.16736 -10.11203 -10.09100 -9.56416 -8.92934 -8.10793 -6.69086 -4.45038 -0.43956 0.40152 0.90273 1.00722 1.06302 2.95374 3.08671 3.21287 3.31957 3.55080 3.81898 4.00873 4.08455 4.31142 4.35924 4.43930 4.57607 4.70688 4.77810 5.28956 5.31546 5.42663 5.47295 5.59956 5.61895 5.78525 6.00110 6.11886 6.22254 6.49374 6.80887 6.84631 7.06825 7.37386 7.60694 7.97402 8.80031 8.85254 10.35610 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.006675 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.266822 B = 4193.880373 C = 4751.428224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.086 3.914 3 Si 0.870 3.130 4 H -0.253 1.253 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.295 4.295 8 H 0.105 0.895 9 N -0.836 5.836 10 C 0.068 3.932 11 C -0.175 4.175 12 C -0.197 4.197 13 S 2.611 3.389 14 O -0.980 6.980 15 O -0.924 6.924 16 C -0.640 4.640 17 C 0.025 3.975 18 C -0.146 4.146 19 C 0.146 3.854 20 N -0.448 5.448 21 C 0.257 3.743 22 N 0.016 4.984 23 O -0.145 6.145 24 O -0.092 6.092 25 H 0.281 0.719 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -8.342 -7.923 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.128 4.128 3 Si 0.695 3.305 4 H -0.177 1.177 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.666 5.666 10 C -0.040 4.040 11 C -0.214 4.214 12 C -0.237 4.237 13 S 2.705 3.295 14 O -0.969 6.969 15 O -0.913 6.913 16 C -0.720 4.720 17 C -0.002 4.002 18 C -0.166 4.166 19 C -0.012 4.012 20 N -0.162 5.162 21 C 0.038 3.962 22 N 0.543 4.457 23 O -0.353 6.353 24 O -0.323 6.323 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.183 0.817 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.966 -8.763 -7.251 12.046 hybrid contribution -0.151 0.674 -0.343 0.772 sum 3.815 -8.089 -7.594 11.732 Atomic orbital electron populations 1.69800 1.06312 1.29075 1.42479 1.25700 0.95130 0.99451 0.92543 0.87023 0.81182 0.82468 0.79816 1.17718 1.21093 1.18609 1.18670 0.81486 0.96071 1.47276 0.87800 1.52574 1.17606 1.70778 1.25646 1.21701 0.97907 1.02568 0.81825 1.23584 1.01021 0.94790 1.02015 1.23346 1.04397 0.97826 0.98092 1.07153 0.74093 0.73021 0.75204 1.93455 1.46808 1.70936 1.85712 1.93511 1.76969 1.84636 1.36206 1.32511 0.99536 1.31441 1.08524 1.21822 0.95437 0.94543 0.88351 1.22716 0.98868 0.95213 0.99784 1.23052 0.88479 1.00167 0.89492 1.66535 1.29436 1.08466 1.11723 1.20858 0.88733 0.91975 0.94639 1.43456 1.01672 1.00302 1.00310 1.94672 1.84218 1.22910 1.33509 1.94509 1.01930 1.63364 1.72495 0.90864 0.85974 0.85475 0.89341 0.89532 0.88533 0.80087 0.81696 0.79767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.02 13.97 55.49 0.78 -20.24 16 2 C 0.09 2.08 3.62 -17.43 -0.06 2.02 16 3 Si 0.87 19.61 24.91 -169.99 -4.23 15.37 16 4 H -0.25 -5.05 5.55 56.52 0.31 -4.74 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -6.97 8.26 -15.06 -0.12 -7.09 16 8 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 9 N -0.84 -18.12 1.65 -53.42 -0.09 -18.20 16 10 C 0.07 1.28 4.88 -67.93 -0.33 0.95 16 11 C -0.18 -3.09 6.60 -26.73 -0.18 -3.27 16 12 C -0.20 -2.97 10.37 -26.73 -0.28 -3.25 16 13 S 2.61 60.14 3.98 -107.50 -0.43 59.71 16 14 O -0.98 -24.07 15.35 -65.96 -1.01 -25.08 16 15 O -0.92 -24.20 16.33 -64.87 -1.06 -25.26 16 16 C -0.64 -12.06 5.84 -39.44 -0.23 -12.29 16 17 C 0.02 0.35 9.68 -39.28 -0.38 -0.03 16 18 C -0.15 -1.46 10.11 -39.44 -0.40 -1.86 16 19 C 0.15 1.56 11.18 -17.55 -0.20 1.37 16 20 N -0.45 -7.11 10.20 -10.29 -0.11 -7.22 16 21 C 0.26 4.93 7.52 -146.19 -1.10 3.83 16 22 N 0.02 0.35 4.16 32.87 0.14 0.49 16 23 O -0.14 -3.40 14.92 -38.94 -0.58 -3.98 16 24 O -0.09 -1.84 19.14 -29.46 -0.56 -2.41 16 25 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 26 H 0.12 2.26 7.52 -51.93 -0.39 1.87 16 27 H 0.13 2.54 4.99 -51.93 -0.26 2.28 16 28 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.37 7.57 -51.93 -0.39 0.98 16 31 H 0.18 2.41 6.53 -52.48 -0.34 2.07 16 32 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -31.73 297.39 -8.66 -40.39 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -2.70 Total: 1.56 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.28 Total: -19.61 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.72 Total: -45.18 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -3.22 Total: -56.73 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.23 Total: 15.37 kcal Atomic # 16 Polarization: 60.14 SS G_CDS: -0.43 Total: 59.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.73 -8.66 -40.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610261887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.216 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds