Wall clock time and date at job start Tue Mar 31 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99771 * 2 1 4 4 H 1.48497 * 109.47157 * 270.65355 * 3 2 1 5 5 H 1.48502 * 109.47094 * 30.65335 * 3 2 1 6 6 H 1.48500 * 109.47057 * 150.65414 * 3 2 1 7 7 C 1.38811 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99410 * 342.60120 * 7 2 1 9 9 N 1.36928 * 120.00175 * 162.32009 * 7 2 1 10 10 C 1.46499 * 120.00258 * 307.43609 * 9 7 2 11 11 C 1.53001 * 117.49437 * 1.98870 * 10 9 7 12 12 C 1.52999 * 60.00225 * 252.50859 * 11 10 9 13 13 S 1.65602 * 119.99941 * 127.43396 * 9 7 2 14 14 O 1.42101 * 106.40129 * 207.38413 * 13 9 7 15 15 O 1.42104 * 106.40238 * 340.30607 * 13 9 7 16 16 C 1.76201 * 107.21741 * 93.84613 * 13 9 7 17 17 C 1.38666 * 120.42029 * 345.14451 * 16 13 9 18 18 C 1.38630 * 118.42140 * 179.76555 * 17 16 13 19 19 C 1.38225 * 119.15868 * 0.52907 * 18 17 16 20 20 N 1.31852 * 120.76409 * 359.71151 * 19 18 17 21 21 C 1.31881 * 121.72618 * 0.02562 * 20 19 18 22 22 N 1.48017 * 119.61565 * 179.97438 * 21 20 19 23 23 O 1.21798 * 119.99897 * 209.33966 * 22 21 20 24 24 O 1.21799 * 120.00132 * 29.34257 * 22 21 20 25 25 H 0.96995 * 120.00465 * 0.02562 * 1 2 3 26 26 H 1.09000 * 115.55259 * 147.69649 * 10 9 7 27 27 H 1.08993 * 117.50213 * 0.02562 * 11 10 9 28 28 H 1.09006 * 117.49761 * 145.02452 * 11 10 9 29 29 H 1.08997 * 117.50212 * 252.51406 * 12 11 10 30 30 H 1.09001 * 117.51694 * 107.47852 * 12 11 10 31 31 H 1.08004 * 120.78690 * 0.02562 * 17 16 13 32 32 H 1.07995 * 120.41856 * 180.24383 * 18 17 16 33 33 H 1.07998 * 119.61385 * 179.72892 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4838 2.0544 -1.3999 5 1 1.4545 2.6486 0.7138 6 1 3.5545 1.4363 0.6861 7 6 2.0103 -1.2021 0.0005 8 1 1.5074 -2.1159 0.2806 9 7 3.3311 -1.2302 -0.3596 10 6 3.7570 -0.6366 -1.6294 11 6 2.6860 0.0404 -2.4870 12 6 3.2742 -1.3045 -2.9186 13 16 4.4471 -1.9352 0.6404 14 8 5.6848 -1.2872 0.3804 15 8 3.8534 -1.9880 1.9303 16 6 4.6393 -3.6052 0.1123 17 6 3.7149 -4.1810 -0.7460 18 6 3.9091 -5.4961 -1.1390 19 6 5.0040 -6.1884 -0.6568 20 7 5.8603 -5.6101 0.1623 21 6 5.7100 -4.3595 0.5529 22 7 6.6994 -3.7570 1.4743 23 8 6.3573 -2.8787 2.2457 24 8 7.8558 -4.1393 1.4609 25 1 -0.4850 0.8400 -0.0004 26 1 4.7554 -0.1993 -1.6326 27 1 1.6647 0.0445 -2.1063 28 1 2.9797 0.9235 -3.0546 29 1 3.9548 -1.3062 -3.7699 30 1 2.6401 -2.1858 -2.8218 31 1 2.8660 -3.6168 -1.1033 32 1 3.2112 -5.9752 -1.8097 33 1 5.1601 -7.2147 -0.9546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610261887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:47 Heat of formation + Delta-G solvation = 5.948510 kcal Electronic energy + Delta-G solvation = -25202.693287 eV Core-core repulsion = 21360.891890 eV Total energy + Delta-G solvation = -3841.801397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.81767 -41.61000 -39.33286 -38.25092 -38.11321 -36.74812 -34.91470 -34.47097 -33.65201 -33.33544 -28.63384 -26.80704 -25.72665 -24.59673 -23.39452 -22.63539 -21.26000 -20.67702 -20.28452 -19.52096 -19.35419 -18.80122 -18.41681 -17.55254 -17.07852 -16.80532 -16.48385 -15.74259 -15.49616 -15.37180 -15.19473 -14.84013 -14.36279 -13.78084 -13.45108 -13.26452 -13.19389 -13.13511 -13.03194 -12.96154 -12.69266 -12.50921 -12.43981 -12.20188 -12.10157 -11.87920 -11.74427 -11.36149 -11.15973 -11.04331 -10.63033 -9.73854 -8.58075 -6.31711 -1.81070 -0.77903 -0.70584 -0.38295 -0.28474 1.27326 1.36160 1.45926 1.89484 1.99813 2.21311 2.52957 2.72778 2.77188 2.96681 3.13137 3.40361 3.56493 3.61980 3.85102 4.04752 4.19716 4.32799 4.37922 4.53967 4.54962 4.62713 4.92343 5.00519 5.17739 5.48576 5.51618 5.59146 5.70837 6.07907 6.13472 6.95244 7.02719 8.50090 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.006675 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.266822 B = 4193.880373 C = 4751.428224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.208 1.208 5 H -0.287 1.287 6 H -0.297 1.297 7 C -0.288 4.288 8 H 0.093 0.907 9 N -0.835 5.835 10 C 0.031 3.969 11 C -0.184 4.184 12 C -0.155 4.155 13 S 2.607 3.393 14 O -1.014 7.014 15 O -0.981 6.981 16 C -0.653 4.653 17 C 0.011 3.989 18 C -0.099 4.099 19 C 0.159 3.841 20 N -0.458 5.458 21 C 0.225 3.775 22 N 0.011 4.989 23 O -0.230 6.230 24 O -0.054 6.054 25 H 0.286 0.714 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.189 0.811 32 H 0.232 0.768 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -11.484 -12.002 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.149 4.149 3 Si 0.713 3.287 4 H -0.130 1.130 5 H -0.213 1.213 6 H -0.224 1.224 7 C -0.429 4.429 8 H 0.111 0.889 9 N -0.666 5.666 10 C -0.076 4.076 11 C -0.223 4.223 12 C -0.194 4.194 13 S 2.709 3.291 14 O -1.003 7.003 15 O -0.971 6.971 16 C -0.741 4.741 17 C -0.015 4.015 18 C -0.118 4.118 19 C 0.002 3.998 20 N -0.173 5.173 21 C 0.008 3.992 22 N 0.533 4.467 23 O -0.419 6.419 24 O -0.300 6.300 25 H 0.096 0.904 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.206 0.794 32 H 0.248 0.752 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.356 -11.711 -11.263 16.591 hybrid contribution 0.085 1.301 0.756 1.507 sum 3.440 -10.411 -10.507 15.186 Atomic orbital electron populations 1.69809 1.06815 1.29705 1.44001 1.26009 0.95429 1.00751 0.92667 0.86802 0.78668 0.81358 0.81902 1.13035 1.21297 1.22366 1.18609 0.81904 0.95554 1.46821 0.88925 1.52470 1.16153 1.71428 1.26542 1.21882 0.98322 1.05456 0.81927 1.23597 0.99265 0.97438 1.02008 1.23489 1.03147 0.96710 0.96048 1.06608 0.73510 0.74391 0.74596 1.93384 1.47999 1.72980 1.85923 1.93424 1.77682 1.86255 1.39714 1.31738 1.01712 1.29109 1.11533 1.22172 0.94566 0.96884 0.87839 1.23477 0.98445 0.92446 0.97473 1.24336 0.86854 1.02175 0.86463 1.66635 1.31148 1.06545 1.12999 1.20709 0.88854 0.93649 0.96035 1.43939 1.02236 1.00031 1.00481 1.94689 1.84721 1.25896 1.36581 1.94419 1.02728 1.61627 1.71248 0.90414 0.86402 0.87670 0.87314 0.85884 0.87166 0.79355 0.75152 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.68 13.97 21.65 0.30 -43.38 16 2 C 0.06 3.12 3.62 84.86 0.31 3.43 16 3 Si 0.89 40.39 24.91 68.60 1.71 42.10 16 4 H -0.21 -7.91 5.55 99.48 0.55 -7.35 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 7 C -0.29 -13.90 8.26 84.03 0.69 -13.21 16 8 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 9 N -0.84 -36.88 1.65 -322.94 -0.53 -37.41 16 10 C 0.03 1.14 4.88 44.99 0.22 1.36 16 11 C -0.18 -6.07 6.60 30.59 0.20 -5.87 16 12 C -0.15 -4.09 10.37 30.60 0.32 -3.77 16 13 S 2.61 126.81 3.98 -56.49 -0.22 126.58 16 14 O -1.01 -53.33 15.35 -119.59 -1.84 -55.16 16 15 O -0.98 -55.79 16.33 -120.64 -1.97 -57.76 16 16 C -0.65 -24.53 5.84 22.36 0.13 -24.40 16 17 C 0.01 0.28 9.68 22.47 0.22 0.49 16 18 C -0.10 -1.30 10.11 22.36 0.23 -1.07 16 19 C 0.16 2.37 11.18 84.69 0.95 3.32 16 20 N -0.46 -13.08 10.20 -186.48 -1.90 -14.99 16 21 C 0.22 8.59 7.52 129.63 0.97 9.56 16 22 N 0.01 0.49 4.16 -49.91 -0.21 0.28 16 23 O -0.23 -11.81 14.92 27.95 0.42 -11.39 16 24 O -0.05 -2.21 19.14 18.89 0.36 -1.85 16 25 H 0.29 13.47 8.31 -92.71 -0.77 12.70 16 26 H 0.12 4.39 7.52 -2.39 -0.02 4.37 16 27 H 0.11 4.04 4.99 -2.39 -0.01 4.02 16 28 H 0.11 3.08 7.72 -2.38 -0.02 3.06 16 29 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.11 2.63 7.57 -2.39 -0.02 2.61 16 31 H 0.19 4.44 6.53 -2.91 -0.02 4.42 16 32 H 0.23 0.11 8.06 -2.91 -0.02 0.09 16 33 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -79.88 297.39 1.37 -78.51 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.02 Total: 4.61 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 4.24 Total: -30.15 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -2.34 Total: -95.50 kcal Atomic # 8 Polarization: -123.12 SS G_CDS: -3.03 Total: -126.15 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.71 Total: 42.10 kcal Atomic # 16 Polarization: 126.81 SS G_CDS: -0.22 Total: 126.58 kcal Total: -79.88 1.37 -78.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610261887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.454 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds