Wall clock time and date at job start Tue Mar 31 2020 04:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 120.00019 * 2 1 4 4 H 1.48500 * 109.46946 * 269.99619 * 3 2 1 5 5 H 1.48496 * 109.46839 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46918 * 150.00157 * 3 2 1 7 7 C 1.37873 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00188 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99774 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00247 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47570 * 179.97438 * 13 11 10 15 15 C 1.34668 * 117.00088 * 180.02562 * 14 13 11 16 16 O 1.21420 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.48076 * 119.99753 * 180.02562 * 15 14 13 18 18 C 1.39618 * 120.87679 * 180.22526 * 17 15 14 19 19 C 1.39044 * 118.95319 * 180.28114 * 18 17 15 20 20 N 1.39023 * 119.62948 * 179.74604 * 19 18 17 21 21 N 1.32366 * 120.73696 * 359.76091 * 19 18 17 22 22 C 1.31963 * 121.94136 * 359.97438 * 21 19 18 23 23 Cl 1.73596 * 119.51674 * 179.97438 * 22 21 19 24 24 C 1.38183 * 120.97099 * 359.97438 * 22 21 19 25 25 H 0.97005 * 119.99692 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46823 * 59.99688 * 9 7 2 27 27 H 1.08995 * 109.46718 * 300.00020 * 9 7 2 28 28 H 0.96999 * 120.00181 * 359.97438 * 10 9 7 29 29 H 1.09003 * 109.47053 * 60.00147 * 13 11 10 30 30 H 1.09000 * 109.47534 * 300.00301 * 13 11 10 31 31 H 1.07996 * 120.52040 * 0.02562 * 18 17 15 32 32 H 0.96998 * 120.00287 * 180.02562 * 20 19 18 33 33 H 0.97003 * 119.99980 * 0.02562 * 20 19 18 34 34 H 1.08002 * 120.42121 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0034 12 8 6.1131 -1.8997 0.0041 13 6 5.8272 -4.2423 0.0052 14 8 7.2793 -4.2424 0.0056 15 6 7.8906 -5.4423 0.0066 16 8 7.2293 -6.4607 0.0066 17 6 9.3693 -5.5198 0.0077 18 6 10.0221 -6.7540 0.0040 19 6 11.4123 -6.7801 0.0111 20 7 12.0768 -8.0013 0.0129 21 7 12.1101 -5.6553 0.0165 22 6 11.5265 -4.4717 0.0149 23 17 12.5032 -3.0366 0.0229 24 6 10.1494 -4.3579 0.0069 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.3695 -3.3125 0.0029 29 1 5.4646 -4.7570 -0.8846 30 1 5.4633 -4.7554 0.8953 31 1 9.4562 -7.6738 -0.0001 32 1 13.0464 -8.0258 0.0183 33 1 11.5707 -8.8288 0.0088 34 1 9.6812 -3.3846 0.0060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728627299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:53 Heat of formation + Delta-G solvation = -83.779657 kcal Electronic energy + Delta-G solvation = -22019.093312 eV Core-core repulsion = 18171.357303 eV Total energy + Delta-G solvation = -3847.736009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23559 -40.22883 -38.89728 -37.11502 -36.61267 -35.18944 -34.42200 -33.16073 -32.46139 -29.84276 -29.53891 -27.40073 -25.35046 -23.72678 -22.28628 -21.40886 -20.19366 -18.94556 -18.22375 -17.43004 -17.28719 -16.86630 -16.65275 -16.19072 -15.75901 -15.33432 -15.26496 -15.06370 -14.99880 -14.73031 -14.13147 -13.29583 -13.28251 -12.80977 -12.60721 -12.50560 -12.40096 -12.14929 -11.64018 -11.16656 -11.09342 -11.07621 -10.95258 -10.79870 -10.24259 -10.23685 -10.02197 -9.57237 -9.41242 -8.84312 -8.45159 -8.31399 -6.26296 -4.29646 0.06671 0.63099 1.35048 2.03479 2.16499 2.96351 2.96812 3.24055 3.25575 3.31029 3.38664 3.66645 4.22783 4.29167 4.32122 4.48289 4.60514 4.80189 4.93585 5.05622 5.09783 5.11739 5.14863 5.57518 5.76578 5.99741 6.55899 6.69603 6.76414 6.97873 7.04042 7.28515 7.33175 7.49928 8.00624 8.37443 8.63523 8.75919 9.32610 10.85387 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.002506 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.616212 B =11168.539417 C =12413.702281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.534 6.534 13 C 0.049 3.951 14 O -0.319 6.319 15 C 0.512 3.488 16 O -0.493 6.493 17 C -0.018 4.018 18 C -0.172 4.172 19 C 0.419 3.581 20 N -0.844 5.844 21 N -0.522 5.522 22 C 0.220 3.780 23 Cl -0.017 7.017 24 C -0.159 4.159 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.399 0.601 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.155 0.845 32 H 0.409 0.591 33 H 0.414 0.586 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.439 -16.026 0.047 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.233 6.233 15 C 0.355 3.645 16 O -0.381 6.381 17 C -0.027 4.027 18 C -0.198 4.198 19 C 0.181 3.819 20 N -0.389 5.389 21 N -0.244 5.244 22 C 0.055 3.945 23 Cl 0.012 6.988 24 C -0.182 4.182 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.233 0.767 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.172 0.828 32 H 0.239 0.761 33 H 0.245 0.755 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 24.530 -15.386 0.056 28.956 hybrid contribution -0.723 0.221 -0.027 0.756 sum 23.807 -15.165 0.029 28.227 Atomic orbital electron populations 1.69875 1.06224 1.27533 1.49090 1.24790 0.94807 0.99204 0.93772 0.86818 0.80587 0.83185 0.79123 1.19778 1.20838 1.18427 1.21058 0.88313 0.95338 1.53741 0.90120 1.19567 0.95382 0.77861 0.97130 1.46061 1.04780 1.11610 1.72419 1.19864 0.83788 0.89276 0.78586 1.90715 1.55278 1.45566 1.49622 1.22928 0.76873 0.97755 1.05220 1.86584 1.22431 1.31149 1.83115 1.20882 0.88395 0.81855 0.73338 1.90853 1.66263 1.36059 1.44943 1.19011 0.89816 0.93524 1.00352 1.21492 0.93069 0.98751 1.06482 1.17767 0.87404 0.85977 0.90790 1.42184 1.10327 1.03530 1.82814 1.66195 1.41307 0.96907 1.19962 1.21083 0.88423 0.87783 0.97190 1.98438 1.71824 1.32378 1.96210 1.21976 0.91810 1.00748 1.03686 0.92165 0.95369 0.95811 0.76667 0.87917 0.87907 0.82764 0.76129 0.75542 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.55 -14.53 9.83 -34.44 -0.34 -14.87 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.22 5.25 4.50 -5.19 -0.02 5.22 16 10 N -0.70 -13.28 5.55 -61.47 -0.34 -13.62 16 11 C 0.50 9.07 7.91 -10.99 -0.09 8.98 16 12 O -0.53 -11.77 16.50 -14.11 -0.23 -12.00 16 13 C 0.05 0.67 5.95 36.00 0.21 0.88 16 14 O -0.32 -4.50 9.11 -47.08 -0.43 -4.93 16 15 C 0.51 6.43 7.92 34.77 0.28 6.70 16 16 O -0.49 -6.69 16.23 -19.20 -0.31 -7.00 16 17 C -0.02 -0.19 5.90 -104.70 -0.62 -0.81 16 18 C -0.17 -1.51 9.50 -38.77 -0.37 -1.88 16 19 C 0.42 3.51 7.74 -155.06 -1.20 2.30 16 20 N -0.84 -3.87 9.07 31.11 0.28 -3.59 16 21 N -0.52 -5.36 10.34 -9.60 -0.10 -5.46 16 22 C 0.22 2.34 7.26 -17.52 -0.13 2.22 16 23 Cl -0.02 -0.17 29.10 -51.86 -1.51 -1.68 16 24 C -0.16 -1.71 9.46 -38.96 -0.37 -2.08 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 27 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 28 H 0.40 6.49 8.32 -40.82 -0.34 6.15 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.15 1.09 7.74 -52.49 -0.41 0.69 16 32 H 0.41 1.49 8.95 -40.82 -0.37 1.12 16 33 H 0.41 0.85 8.82 -40.82 -0.36 0.49 16 34 H 0.16 1.80 7.71 -52.49 -0.40 1.39 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -33.49 328.26 -7.39 -40.88 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.07 Total: 2.60 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -2.74 Total: 8.74 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.62 Total: -47.84 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.97 Total: -23.93 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.49 -7.39 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728627299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.896 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds