Wall clock time and date at job start Tue Mar 31 2020 04:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 120.00019 * 2 1 4 4 H 1.48500 * 109.46946 * 269.99619 * 3 2 1 5 5 H 1.48496 * 109.46839 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46918 * 150.00157 * 3 2 1 7 7 C 1.37873 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00188 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99774 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00247 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47570 * 179.97438 * 13 11 10 15 15 C 1.34668 * 117.00088 * 180.02562 * 14 13 11 16 16 O 1.21420 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.48076 * 119.99753 * 180.02562 * 15 14 13 18 18 C 1.39618 * 120.87679 * 180.22526 * 17 15 14 19 19 C 1.39044 * 118.95319 * 180.28114 * 18 17 15 20 20 N 1.39023 * 119.62948 * 179.74604 * 19 18 17 21 21 N 1.32366 * 120.73696 * 359.76091 * 19 18 17 22 22 C 1.31963 * 121.94136 * 359.97438 * 21 19 18 23 23 Cl 1.73596 * 119.51674 * 179.97438 * 22 21 19 24 24 C 1.38183 * 120.97099 * 359.97438 * 22 21 19 25 25 H 0.97005 * 119.99692 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46823 * 59.99688 * 9 7 2 27 27 H 1.08995 * 109.46718 * 300.00020 * 9 7 2 28 28 H 0.96999 * 120.00181 * 359.97438 * 10 9 7 29 29 H 1.09003 * 109.47053 * 60.00147 * 13 11 10 30 30 H 1.09000 * 109.47534 * 300.00301 * 13 11 10 31 31 H 1.07996 * 120.52040 * 0.02562 * 18 17 15 32 32 H 0.96998 * 120.00287 * 180.02562 * 20 19 18 33 33 H 0.97003 * 119.99980 * 0.02562 * 20 19 18 34 34 H 1.08002 * 120.42121 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0034 12 8 6.1131 -1.8997 0.0041 13 6 5.8272 -4.2423 0.0052 14 8 7.2793 -4.2424 0.0056 15 6 7.8906 -5.4423 0.0066 16 8 7.2293 -6.4607 0.0066 17 6 9.3693 -5.5198 0.0077 18 6 10.0221 -6.7540 0.0040 19 6 11.4123 -6.7801 0.0111 20 7 12.0768 -8.0013 0.0129 21 7 12.1101 -5.6553 0.0165 22 6 11.5265 -4.4717 0.0149 23 17 12.5032 -3.0366 0.0229 24 6 10.1494 -4.3579 0.0069 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.3695 -3.3125 0.0029 29 1 5.4646 -4.7570 -0.8846 30 1 5.4633 -4.7554 0.8953 31 1 9.4562 -7.6738 -0.0001 32 1 13.0464 -8.0258 0.0183 33 1 11.5707 -8.8288 0.0088 34 1 9.6812 -3.3846 0.0060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728627299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:52 Heat of formation + Delta-G solvation = -108.080410 kcal Electronic energy + Delta-G solvation = -22020.147071 eV Core-core repulsion = 18171.357303 eV Total energy + Delta-G solvation = -3848.789769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12203 -41.15317 -40.32465 -37.88899 -37.66242 -36.19146 -35.79627 -34.45274 -33.91623 -31.17043 -30.36997 -28.98195 -26.29346 -24.43937 -24.09437 -22.37384 -21.72439 -19.85225 -19.33736 -18.76458 -18.19414 -17.91963 -17.81202 -17.26552 -16.93293 -16.60152 -16.34853 -16.12008 -15.80195 -15.78125 -15.65866 -14.84284 -14.64447 -14.34943 -13.92815 -13.78457 -13.32226 -13.30060 -13.07372 -12.70241 -12.42089 -12.12395 -11.98263 -11.92518 -11.80289 -11.65497 -11.02163 -10.96844 -10.93575 -10.91230 -10.02410 -9.05067 -8.38976 -6.46338 -0.72993 -0.10145 0.59818 1.02275 1.26926 1.34779 1.37885 1.49094 1.53324 2.29010 2.35350 2.45815 2.50708 2.96645 3.27083 3.59954 3.64807 3.75248 3.93053 4.02160 4.05556 4.15453 4.32934 4.76288 4.85483 5.01333 5.02436 5.05049 5.25203 5.41349 6.06134 6.06823 6.24199 6.35160 6.54022 6.72852 7.02311 7.13007 7.28840 8.75463 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.002506 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.616212 B =11168.539417 C =12413.702281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.232 3.768 10 N -0.696 5.696 11 C 0.504 3.496 12 O -0.576 6.576 13 C 0.058 3.942 14 O -0.335 6.335 15 C 0.519 3.481 16 O -0.503 6.503 17 C -0.029 4.029 18 C -0.161 4.161 19 C 0.421 3.579 20 N -0.823 5.823 21 N -0.537 5.537 22 C 0.213 3.787 23 Cl -0.019 7.019 24 C -0.169 4.169 25 H 0.272 0.728 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.414 0.586 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.175 0.825 32 H 0.416 0.584 33 H 0.428 0.572 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.894 -17.608 0.016 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.348 5.348 11 C 0.290 3.710 12 O -0.456 6.456 13 C -0.019 4.019 14 O -0.250 6.250 15 C 0.363 3.637 16 O -0.392 6.392 17 C -0.038 4.038 18 C -0.186 4.186 19 C 0.180 3.820 20 N -0.369 5.369 21 N -0.259 5.259 22 C 0.049 3.951 23 Cl 0.009 6.991 24 C -0.193 4.193 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.250 0.750 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.192 0.808 32 H 0.248 0.752 33 H 0.262 0.738 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 25.997 -17.040 0.024 31.084 hybrid contribution -1.130 0.551 -0.016 1.257 sum 24.867 -16.490 0.008 29.838 Atomic orbital electron populations 1.69979 1.07711 1.28614 1.50633 1.25592 0.95526 1.02683 0.93627 0.85877 0.79343 0.79347 0.79457 1.19020 1.20043 1.18197 1.21277 0.89840 0.94683 1.52671 0.91961 1.19171 0.93404 0.80371 0.96183 1.45838 1.05864 1.10335 1.72743 1.20543 0.82739 0.90977 0.76743 1.90697 1.56145 1.47502 1.51260 1.22856 0.77004 0.94198 1.07793 1.86573 1.22624 1.32336 1.83466 1.21049 0.88879 0.81100 0.72676 1.90844 1.66590 1.36074 1.45689 1.18985 0.88810 0.94331 1.01687 1.21693 0.93298 0.98687 1.04943 1.17975 0.87515 0.86549 0.89964 1.42205 1.10901 1.02857 1.80947 1.66237 1.41652 0.97216 1.20820 1.21082 0.88350 0.88075 0.97613 1.98430 1.71783 1.32604 1.96250 1.21864 0.91975 1.00573 1.04916 0.91860 0.96467 0.96559 0.75004 0.85243 0.85249 0.80807 0.75246 0.73821 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.96 21.45 0.30 -54.39 16 2 C 0.03 1.45 5.47 84.65 0.46 1.91 16 3 Si 0.94 43.10 27.47 68.60 1.88 44.99 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 7 C -0.55 -29.20 9.83 25.60 0.25 -28.94 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.23 10.89 4.50 85.64 0.39 11.27 16 10 N -0.70 -25.87 5.55 -466.78 -2.59 -28.46 16 11 C 0.50 17.68 7.91 87.66 0.69 18.37 16 12 O -0.58 -25.23 16.50 15.74 0.26 -24.97 16 13 C 0.06 1.44 5.95 71.23 0.42 1.86 16 14 O -0.34 -9.03 9.11 -49.39 -0.45 -9.48 16 15 C 0.52 12.15 7.92 70.43 0.56 12.71 16 16 O -0.50 -12.43 16.23 20.09 0.33 -12.11 16 17 C -0.03 -0.59 5.90 -19.92 -0.12 -0.71 16 18 C -0.16 -2.44 9.50 22.80 0.22 -2.22 16 19 C 0.42 6.08 7.74 133.04 1.03 7.11 16 20 N -0.82 -5.15 9.07 -55.50 -0.50 -5.66 16 21 N -0.54 -10.28 10.34 -184.28 -1.91 -12.18 16 22 C 0.21 4.42 7.26 84.66 0.62 5.03 16 23 Cl -0.02 -0.38 29.10 -2.72 -0.08 -0.46 16 24 C -0.17 -3.59 9.46 22.67 0.21 -3.38 16 25 H 0.27 14.94 8.31 -92.70 -0.77 14.16 16 26 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 27 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 28 H 0.41 12.95 8.32 -92.71 -0.77 12.18 16 29 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.17 1.90 7.74 -2.91 -0.02 1.88 16 32 H 0.42 1.86 8.95 -92.71 -0.83 1.03 16 33 H 0.43 0.30 8.82 -92.71 -0.82 -0.52 16 34 H 0.16 3.50 7.71 -2.91 -0.02 3.47 16 Total: -1.00 -71.76 328.26 0.71 -71.05 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -1.27 Total: 8.64 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 4.73 Total: 23.02 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -4.70 Total: -100.68 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: 0.14 Total: -46.56 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -71.76 0.71 -71.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728627299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.027 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds