Wall clock time and date at job start Tue Mar 31 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47163 * 299.99689 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99617 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 O 1.45194 * 109.47090 * 179.97438 * 13 11 10 15 15 C 1.34758 * 116.99808 * 179.97438 * 14 13 11 16 16 O 1.21513 * 120.00181 * 0.02562 * 15 14 13 17 17 C 1.47404 * 119.99825 * 179.97438 * 15 14 13 18 18 C 1.39640 * 120.48166 * 0.02562 * 17 15 14 19 19 N 1.31647 * 120.53571 * 179.97438 * 18 17 15 20 20 C 1.32608 * 121.65305 * 0.02562 * 19 18 17 21 21 N 1.38490 * 119.53605 * 179.97438 * 20 19 18 22 22 C 1.39476 * 120.92616 * 359.97438 * 20 19 18 23 23 Cl 1.73595 * 120.31902 * 180.02562 * 22 20 19 24 24 C 1.36945 * 119.36205 * 359.72459 * 22 20 19 25 25 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 27 27 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 28 28 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 30 30 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 31 31 H 1.07999 * 119.72991 * 0.02562 * 18 17 15 32 32 H 0.96996 * 119.99892 * 359.97438 * 21 20 19 33 33 H 0.97004 * 119.99708 * 180.02562 * 21 20 19 34 34 H 1.08010 * 120.76134 * 180.27373 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 8 2.0074 -7.2862 0.0005 15 6 2.7413 -8.4163 0.0004 16 8 3.9548 -8.3527 0.0009 17 6 2.0722 -9.7297 0.0009 18 6 0.6783 -9.8145 0.0008 19 7 0.0796 -10.9870 0.0007 20 6 0.7684 -12.1201 0.0012 21 7 0.0933 -13.3294 0.0016 22 6 2.1631 -12.1112 0.0012 23 17 3.0490 -13.6041 0.0011 24 6 2.8269 -10.9134 -0.0049 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8902 28 1 3.1568 -3.4354 0.0009 29 1 3.3606 -5.9709 -0.8889 30 1 3.3594 -5.9711 0.8910 31 1 0.0868 -8.9110 0.0000 32 1 -0.8765 -13.3434 0.0019 33 1 0.5905 -14.1623 0.0023 34 1 3.9065 -10.8801 -0.0094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728629222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:08 Heat of formation + Delta-G solvation = -92.270402 kcal Electronic energy + Delta-G solvation = -21923.391813 eV Core-core repulsion = 18075.287618 eV Total energy + Delta-G solvation = -3848.104195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14506 -40.10130 -38.67887 -37.12811 -36.41290 -35.39838 -34.25836 -32.80535 -32.42010 -30.56494 -28.97033 -26.70032 -24.56688 -24.17771 -22.61931 -21.35353 -19.95585 -18.67462 -18.40013 -17.88919 -17.28428 -16.67334 -16.65879 -15.70802 -15.57618 -15.27856 -15.20668 -15.04244 -14.52422 -14.33942 -14.00043 -13.42370 -13.05612 -13.03379 -12.56853 -12.55398 -12.01201 -11.79962 -11.71451 -11.44613 -11.00411 -10.95120 -10.94298 -10.73034 -10.35277 -10.16608 -10.05423 -9.42928 -9.19637 -8.79428 -8.50801 -7.99833 -6.20339 -4.27606 0.26074 0.64272 1.49968 2.29762 2.35692 2.79546 3.16351 3.22169 3.29507 3.32428 3.34130 3.89103 4.00339 4.31776 4.39366 4.46247 4.61720 4.78887 5.05839 5.15932 5.22922 5.26455 5.33082 5.54236 5.84291 6.24084 6.46737 6.73073 7.21777 7.29531 7.45177 7.49067 7.57452 7.64055 7.91276 8.48935 8.70375 8.95280 9.38846 10.89805 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.042375 B = 0.002067 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.606848 B =13545.433508 C =14185.593591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.051 3.949 14 O -0.325 6.325 15 C 0.522 3.478 16 O -0.511 6.511 17 C -0.231 4.231 18 C 0.228 3.772 19 N -0.535 5.535 20 C 0.448 3.552 21 N -0.830 5.830 22 C -0.173 4.173 23 Cl -0.054 7.054 24 C 0.041 3.959 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.188 0.812 32 H 0.413 0.587 33 H 0.413 0.587 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.971 -27.471 -0.006 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.411 6.411 13 C -0.026 4.026 14 O -0.240 6.240 15 C 0.366 3.634 16 O -0.401 6.401 17 C -0.237 4.237 18 C 0.068 3.932 19 N -0.253 5.253 20 C 0.207 3.793 21 N -0.371 5.371 22 C -0.207 4.207 23 Cl -0.026 7.026 24 C 0.016 3.984 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.204 0.796 32 H 0.244 0.756 33 H 0.246 0.754 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.459 -27.634 -0.007 27.850 hybrid contribution 1.863 0.660 -0.001 1.976 sum 5.322 -26.975 -0.008 27.495 Atomic orbital electron populations 1.69976 1.06110 1.27312 1.48763 1.24958 0.94937 0.99513 0.94630 0.86338 0.79821 0.82841 0.77770 1.19603 1.20778 1.20781 1.21248 0.93376 0.90289 1.53386 0.91701 1.19182 0.88161 0.81532 0.98060 1.46361 1.11547 1.05342 1.72390 1.19869 0.89104 0.83973 0.78787 1.90708 1.16285 1.84542 1.49599 1.22896 0.94392 0.80564 1.04793 1.86571 1.39882 1.13855 1.83677 1.20608 0.85422 0.84534 0.72842 1.90849 1.14629 1.87936 1.46659 1.19676 0.94763 0.90789 1.18492 1.23265 0.91063 0.95147 0.83750 1.67614 1.38248 0.96920 1.22530 1.18331 0.86532 0.87804 0.86660 1.42386 1.10798 1.04325 1.79621 1.20717 0.90956 0.89179 1.19802 1.98364 1.74948 1.31706 1.97550 1.21073 1.01652 0.88484 0.87241 0.92420 0.95221 0.95213 0.77395 0.88318 0.88323 0.79563 0.75642 0.75443 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 10 N -0.71 -14.22 5.55 -61.48 -0.34 -14.56 16 11 C 0.50 9.64 7.91 -10.98 -0.09 9.56 16 12 O -0.53 -12.54 16.50 -14.10 -0.23 -12.78 16 13 C 0.05 0.74 5.95 36.01 0.21 0.95 16 14 O -0.33 -4.83 9.02 -47.33 -0.43 -5.26 16 15 C 0.52 6.96 7.89 34.46 0.27 7.23 16 16 O -0.51 -7.55 16.20 -19.28 -0.31 -7.86 16 17 C -0.23 -2.57 5.89 -104.84 -0.62 -3.19 16 18 C 0.23 2.44 10.79 -17.11 -0.18 2.26 16 19 N -0.53 -5.53 10.38 -12.10 -0.13 -5.66 16 20 C 0.45 3.90 7.73 -155.21 -1.20 2.70 16 21 N -0.83 -4.50 9.01 31.13 0.28 -4.22 16 22 C -0.17 -1.49 6.32 -39.59 -0.25 -1.74 16 23 Cl -0.05 -0.38 27.57 -51.86 -1.43 -1.81 16 24 C 0.04 0.40 9.44 -39.24 -0.37 0.03 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.19 1.94 7.61 -52.49 -0.40 1.54 16 32 H 0.41 1.68 8.95 -40.82 -0.37 1.31 16 33 H 0.41 1.57 7.45 -40.82 -0.30 1.26 16 34 H 0.16 1.40 7.73 -52.48 -0.41 1.00 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -33.37 328.98 -7.62 -40.99 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.04 Total: 4.45 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -2.67 Total: 11.11 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.55 Total: -49.32 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.97 Total: -25.89 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.43 Total: -1.81 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.37 -7.62 -40.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728629222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.282 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds