Wall clock time and date at job start Tue Mar 31 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47163 * 299.99689 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99617 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 O 1.45194 * 109.47090 * 179.97438 * 13 11 10 15 15 C 1.34758 * 116.99808 * 179.97438 * 14 13 11 16 16 O 1.21513 * 120.00181 * 0.02562 * 15 14 13 17 17 C 1.47404 * 119.99825 * 179.97438 * 15 14 13 18 18 C 1.39640 * 120.48166 * 0.02562 * 17 15 14 19 19 N 1.31647 * 120.53571 * 179.97438 * 18 17 15 20 20 C 1.32608 * 121.65305 * 0.02562 * 19 18 17 21 21 N 1.38490 * 119.53605 * 179.97438 * 20 19 18 22 22 C 1.39476 * 120.92616 * 359.97438 * 20 19 18 23 23 Cl 1.73595 * 120.31902 * 180.02562 * 22 20 19 24 24 C 1.36945 * 119.36205 * 359.72459 * 22 20 19 25 25 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 27 27 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 28 28 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 30 30 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 31 31 H 1.07999 * 119.72991 * 0.02562 * 18 17 15 32 32 H 0.96996 * 119.99892 * 359.97438 * 21 20 19 33 33 H 0.97004 * 119.99708 * 180.02562 * 21 20 19 34 34 H 1.08010 * 120.76134 * 180.27373 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 8 2.0074 -7.2862 0.0005 15 6 2.7413 -8.4163 0.0004 16 8 3.9548 -8.3527 0.0009 17 6 2.0722 -9.7297 0.0009 18 6 0.6783 -9.8145 0.0008 19 7 0.0796 -10.9870 0.0007 20 6 0.7684 -12.1201 0.0012 21 7 0.0933 -13.3294 0.0016 22 6 2.1631 -12.1112 0.0012 23 17 3.0490 -13.6041 0.0011 24 6 2.8269 -10.9134 -0.0049 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8902 28 1 3.1568 -3.4354 0.0009 29 1 3.3606 -5.9709 -0.8889 30 1 3.3594 -5.9711 0.8910 31 1 0.0868 -8.9110 0.0000 32 1 -0.8765 -13.3434 0.0019 33 1 0.5905 -14.1623 0.0023 34 1 3.9065 -10.8801 -0.0094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728629222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:08 Heat of formation + Delta-G solvation = -116.118133 kcal Electronic energy + Delta-G solvation = -21924.425928 eV Core-core repulsion = 18075.287618 eV Total energy + Delta-G solvation = -3849.138311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03232 -41.12294 -40.22514 -37.76510 -37.55234 -36.14926 -36.06010 -34.39131 -33.55151 -31.49404 -30.37438 -28.41877 -25.49731 -24.97451 -24.44223 -22.35044 -21.60861 -19.63160 -19.29680 -18.93294 -18.39886 -17.96212 -17.79713 -17.29760 -16.92455 -16.32913 -16.25397 -16.14020 -15.81246 -15.73668 -14.90022 -14.57500 -14.46508 -14.19185 -14.06724 -13.75558 -13.63673 -13.20256 -12.89486 -12.74673 -12.32625 -12.20966 -12.14189 -11.99243 -11.88670 -11.44897 -10.88582 -10.87509 -10.82759 -10.81310 -9.89374 -9.16998 -8.28109 -6.44175 -0.54144 -0.09257 0.80700 1.26812 1.35470 1.46082 1.46136 1.59872 1.60088 2.19484 2.35429 2.54406 2.59385 3.07306 3.22667 3.57847 3.67383 3.73925 3.81074 4.03142 4.10430 4.11331 4.46314 4.77372 5.08337 5.09994 5.20200 5.25120 5.45017 5.65658 5.84492 5.90689 6.17609 6.53633 6.65639 6.81601 6.89857 7.22933 7.39050 8.84130 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.042375 B = 0.002067 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.606848 B =13545.433508 C =14185.593591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.581 6.581 13 C 0.062 3.938 14 O -0.341 6.341 15 C 0.527 3.473 16 O -0.527 6.527 17 C -0.245 4.245 18 C 0.228 3.772 19 N -0.550 5.550 20 C 0.447 3.553 21 N -0.810 5.810 22 C -0.172 4.172 23 Cl -0.036 7.036 24 C 0.043 3.957 25 H 0.269 0.731 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.413 0.587 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.183 0.817 32 H 0.421 0.579 33 H 0.423 0.577 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 -28.626 -0.005 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.014 4.014 14 O -0.256 6.256 15 C 0.373 3.627 16 O -0.418 6.418 17 C -0.252 4.252 18 C 0.067 3.933 19 N -0.269 5.269 20 C 0.205 3.795 21 N -0.353 5.353 22 C -0.207 4.207 23 Cl -0.008 7.008 24 C 0.018 3.982 25 H 0.078 0.922 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.249 0.751 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.199 0.801 32 H 0.254 0.746 33 H 0.257 0.743 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.592 -28.860 -0.006 29.397 hybrid contribution 1.141 0.807 -0.001 1.398 sum 6.733 -28.053 -0.008 28.850 Atomic orbital electron populations 1.70132 1.08204 1.28517 1.49989 1.26047 0.95780 1.03852 0.93950 0.85115 0.79124 0.77413 0.77581 1.17624 1.20577 1.20587 1.21651 0.94441 0.90418 1.52766 0.89585 1.18624 0.88577 0.83782 0.94638 1.46031 1.11718 1.04740 1.72597 1.20668 0.89310 0.84660 0.76786 1.90686 1.18827 1.85271 1.51381 1.22770 0.92547 0.78729 1.07391 1.86565 1.40669 1.14315 1.84072 1.20848 0.85215 0.84496 0.72111 1.90833 1.15124 1.88028 1.47788 1.19553 0.94882 0.90166 1.20597 1.23197 0.90997 0.95372 0.83705 1.67623 1.38594 0.97225 1.23478 1.18510 0.86869 0.88208 0.85962 1.42417 1.11422 1.03711 1.77715 1.20719 0.91080 0.89644 1.19211 1.98373 1.74571 1.30371 1.97440 1.21146 1.01952 0.88299 0.86827 0.92244 0.98913 0.98903 0.75114 0.85589 0.85597 0.80052 0.74624 0.74276 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.98 41.71 29.54 68.60 2.03 43.74 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -29.41 9.28 25.60 0.24 -29.17 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.19 5.43 85.63 0.46 14.65 16 10 N -0.70 -28.23 5.55 -466.80 -2.59 -30.82 16 11 C 0.50 19.42 7.91 87.66 0.69 20.11 16 12 O -0.58 -28.34 16.50 15.78 0.26 -28.07 16 13 C 0.06 1.72 5.95 71.24 0.42 2.14 16 14 O -0.34 -9.97 9.02 -50.30 -0.45 -10.42 16 15 C 0.53 13.67 7.89 70.24 0.55 14.22 16 16 O -0.53 -14.82 16.20 19.79 0.32 -14.50 16 17 C -0.24 -5.33 5.89 -20.00 -0.12 -5.45 16 18 C 0.23 4.87 10.79 85.06 0.92 5.79 16 19 N -0.55 -10.98 10.38 -192.19 -2.00 -12.98 16 20 C 0.45 7.11 7.73 133.26 1.03 8.14 16 21 N -0.81 -7.13 9.01 -55.43 -0.50 -7.63 16 22 C -0.17 -2.70 6.32 22.26 0.14 -2.56 16 23 Cl -0.04 -0.43 27.57 -2.72 -0.07 -0.50 16 24 C 0.04 0.78 9.44 22.49 0.21 0.99 16 25 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.41 13.33 8.32 -92.71 -0.77 12.56 16 29 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.18 3.94 7.61 -2.91 -0.02 3.92 16 32 H 0.42 2.58 8.95 -92.71 -0.83 1.75 16 33 H 0.42 2.19 7.45 -92.71 -0.69 1.50 16 34 H 0.17 2.69 7.73 -2.91 -0.02 2.67 16 Total: -1.00 -73.69 328.98 1.21 -72.48 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -1.09 Total: 14.17 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: 5.02 Total: 29.52 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.80 Total: -106.40 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: 0.13 Total: -52.99 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.07 Total: -0.50 kcal Total: -73.69 1.21 -72.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728629222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.640 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds