Wall clock time and date at job start Tue Mar 31 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47073 * 270.00096 * 3 2 1 5 5 H 1.48505 * 109.47135 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.47214 * 149.99802 * 3 2 1 7 7 C 1.38949 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00286 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 O 1.42892 * 109.47509 * 179.72203 * 16 14 13 18 18 C 1.35906 * 117.00250 * 179.97438 * 17 16 14 19 19 C 1.38760 * 120.04730 * 359.72169 * 18 17 16 20 20 C 1.38123 * 119.96927 * 179.74971 * 19 18 17 21 21 C 1.38268 * 120.07206 * 0.54736 * 20 19 18 22 22 C 1.38364 * 120.09284 * 359.70339 * 21 20 19 23 23 Cl 1.73605 * 119.98485 * 180.02562 * 22 21 20 24 24 C 1.38283 * 120.03273 * 0.02562 * 22 21 20 25 25 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.08006 * 120.01422 * 0.02749 * 19 18 17 32 32 H 1.08008 * 119.96823 * 180.25432 * 20 19 18 33 33 H 1.07995 * 119.95809 * 179.72544 * 21 20 19 34 34 H 1.08003 * 120.03832 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2105 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9665 0.0007 14 6 1.6748 -7.2069 -0.0002 15 8 0.4769 -7.3652 -0.0012 16 6 2.5927 -8.4019 0.0067 17 8 1.8146 -9.6004 0.0107 18 6 2.4941 -10.7773 0.0166 19 6 3.8817 -10.7785 0.0126 20 6 4.5707 -11.9755 0.0238 21 6 3.8793 -13.1729 0.0276 22 6 2.4957 -13.1751 0.0264 23 17 1.6304 -14.6801 0.0318 24 6 1.8017 -11.9790 0.0208 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6178 -4.9205 -0.8903 28 1 0.6171 -4.9208 0.8897 29 1 3.2230 -8.3810 -0.8824 30 1 3.2202 -8.3731 0.8975 31 1 4.4227 -9.8437 0.0052 32 1 5.6508 -11.9764 0.0248 33 1 4.4199 -14.1078 0.0319 34 1 0.7217 -11.9806 0.0203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731233709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:27 Heat of formation + Delta-G solvation = -133.527001 kcal Electronic energy + Delta-G solvation = -21721.532693 eV Core-core repulsion = 17839.346726 eV Total energy + Delta-G solvation = -3882.185967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93382 -40.14030 -38.35360 -37.93067 -36.69110 -36.15121 -34.05958 -31.63202 -31.43328 -30.64990 -29.48476 -27.81301 -24.67944 -23.36054 -22.86006 -21.05561 -19.66662 -18.99246 -18.12511 -17.65724 -17.11462 -16.94563 -16.41363 -15.96417 -15.82830 -15.58817 -15.16168 -14.57712 -14.19777 -14.17929 -14.02961 -13.62694 -13.58688 -12.89138 -12.52209 -12.31822 -12.10220 -12.08878 -11.68796 -11.66011 -11.33713 -11.32192 -11.17084 -10.55189 -10.52510 -10.47502 -10.33276 -9.65393 -9.31488 -8.74484 -8.59666 -8.13494 -6.54370 -3.96794 0.66003 0.87566 1.53579 1.98798 2.07913 3.10038 3.16629 3.19850 3.22976 3.29426 3.67405 4.04847 4.23382 4.43161 4.51408 4.63818 4.65954 4.66198 4.81305 4.94753 4.96869 5.10202 5.34572 5.43513 5.61088 5.66875 5.80163 5.87009 5.97082 6.03368 6.43073 6.80434 7.43556 7.66395 7.89277 8.42685 9.02126 9.33711 9.82986 10.62650 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.050605 B = 0.001866 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.170489 B =14998.190613 C =15530.880217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.550 5.550 10 C 0.437 3.563 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.461 3.539 15 O -0.490 6.490 16 C 0.070 3.930 17 O -0.290 6.290 18 C 0.147 3.853 19 C -0.205 4.205 20 C -0.065 4.065 21 C -0.149 4.149 22 C 0.004 3.996 23 Cl -0.062 7.062 24 C -0.141 4.141 25 H 0.275 0.725 26 H 0.395 0.605 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -24.745 0.051 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.014 4.014 13 O -0.236 6.236 14 C 0.301 3.699 15 O -0.376 6.376 16 C -0.006 4.006 17 O -0.203 6.203 18 C 0.101 3.899 19 C -0.224 4.224 20 C -0.083 4.083 21 C -0.168 4.168 22 C -0.023 4.023 23 Cl -0.033 7.033 24 C -0.161 4.161 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.004 -24.671 0.058 25.174 hybrid contribution -0.348 0.816 -0.014 0.887 sum 4.656 -23.855 0.043 24.306 Atomic orbital electron populations 1.69610 1.06016 1.28587 1.49383 1.25330 0.95701 0.99928 0.96778 0.85784 0.79222 0.80337 0.78522 1.20231 1.20780 1.19260 1.19730 0.93498 0.81692 1.48358 0.87554 1.41701 1.09418 1.04060 1.63569 1.19259 0.88317 0.83995 0.86255 1.90564 1.13362 1.86746 1.55446 1.22834 0.90701 0.84055 1.03859 1.86483 1.40472 1.13545 1.83087 1.22783 0.88201 0.84841 0.74036 1.90718 1.16388 1.86587 1.43950 1.21917 0.92095 0.80676 1.05962 1.86086 1.34437 1.11315 1.88444 1.18733 0.90345 0.85176 0.95658 1.21480 0.92819 1.00349 1.07761 1.20929 1.00336 0.90891 0.96129 1.21000 0.91846 0.99430 1.04511 1.20558 0.92279 0.86802 1.02672 1.98388 1.76975 1.31178 1.96762 1.20217 1.01287 0.88179 1.06392 0.91553 0.77097 0.89221 0.89228 0.87116 0.87097 0.84254 0.84427 0.84675 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.67 13.05 55.50 0.72 -22.94 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.33 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.44 10.22 7.86 -10.99 -0.09 10.13 16 11 O -0.58 -15.55 16.08 -14.11 -0.23 -15.78 16 12 C 0.06 1.14 5.94 36.01 0.21 1.36 16 13 O -0.32 -5.56 9.76 -45.90 -0.45 -6.00 16 14 C 0.46 6.84 8.03 36.00 0.29 7.13 16 15 O -0.49 -8.59 16.25 -25.48 -0.41 -9.01 16 16 C 0.07 0.72 5.33 36.00 0.19 0.91 16 17 O -0.29 -3.42 9.67 -39.40 -0.38 -3.80 16 18 C 0.15 1.45 6.69 -39.22 -0.26 1.19 16 19 C -0.21 -1.58 9.04 -39.43 -0.36 -1.94 16 20 C -0.06 -0.42 10.04 -39.61 -0.40 -0.82 16 21 C -0.15 -1.06 9.83 -39.52 -0.39 -1.45 16 22 C 0.00 0.03 6.32 -39.52 -0.25 -0.22 16 23 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.00 16 24 C -0.14 -1.36 9.77 -39.40 -0.38 -1.75 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 27 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 28 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 29 H 0.11 0.87 7.65 -51.93 -0.40 0.47 16 30 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 31 H 0.14 0.81 6.30 -52.48 -0.33 0.48 16 32 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -32.70 329.37 -7.11 -39.81 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.07 Total: 6.35 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.67 Total: 6.73 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.67 Total: -36.60 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.47 Total: -34.59 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.70 -7.11 -39.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731233709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.717 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds