Wall clock time and date at job start Tue Mar 31 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47073 * 270.00096 * 3 2 1 5 5 H 1.48505 * 109.47135 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.47214 * 149.99802 * 3 2 1 7 7 C 1.38949 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00286 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 O 1.42892 * 109.47509 * 179.72203 * 16 14 13 18 18 C 1.35906 * 117.00250 * 179.97438 * 17 16 14 19 19 C 1.38760 * 120.04730 * 359.72169 * 18 17 16 20 20 C 1.38123 * 119.96927 * 179.74971 * 19 18 17 21 21 C 1.38268 * 120.07206 * 0.54736 * 20 19 18 22 22 C 1.38364 * 120.09284 * 359.70339 * 21 20 19 23 23 Cl 1.73605 * 119.98485 * 180.02562 * 22 21 20 24 24 C 1.38283 * 120.03273 * 0.02562 * 22 21 20 25 25 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.08006 * 120.01422 * 0.02749 * 19 18 17 32 32 H 1.08008 * 119.96823 * 180.25432 * 20 19 18 33 33 H 1.07995 * 119.95809 * 179.72544 * 21 20 19 34 34 H 1.08003 * 120.03832 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2105 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9665 0.0007 14 6 1.6748 -7.2069 -0.0002 15 8 0.4769 -7.3652 -0.0012 16 6 2.5927 -8.4019 0.0067 17 8 1.8146 -9.6004 0.0107 18 6 2.4941 -10.7773 0.0166 19 6 3.8817 -10.7785 0.0126 20 6 4.5707 -11.9755 0.0238 21 6 3.8793 -13.1729 0.0276 22 6 2.4957 -13.1751 0.0264 23 17 1.6304 -14.6801 0.0318 24 6 1.8017 -11.9790 0.0208 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6178 -4.9205 -0.8903 28 1 0.6171 -4.9208 0.8897 29 1 3.2230 -8.3810 -0.8824 30 1 3.2202 -8.3731 0.8975 31 1 4.4227 -9.8437 0.0052 32 1 5.6508 -11.9764 0.0248 33 1 4.4199 -14.1078 0.0319 34 1 0.7217 -11.9806 0.0203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731233709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:27 Heat of formation + Delta-G solvation = -153.234689 kcal Electronic energy + Delta-G solvation = -21722.387282 eV Core-core repulsion = 17839.346726 eV Total energy + Delta-G solvation = -3883.040556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95288 -41.10307 -40.03827 -38.78858 -37.58670 -37.22785 -36.04321 -33.43232 -32.27579 -31.37162 -30.56244 -29.08393 -26.54775 -24.03315 -23.58766 -22.13254 -21.45852 -20.10014 -19.72794 -18.80294 -18.20505 -18.10466 -17.44119 -17.05640 -16.89299 -16.79384 -16.33944 -15.87860 -15.71949 -15.65115 -14.83690 -14.63239 -14.44537 -14.23206 -13.94721 -13.57928 -13.52882 -12.95025 -12.86222 -12.83872 -12.47949 -12.35499 -12.12019 -11.98642 -11.97103 -11.93994 -11.65885 -11.58179 -10.53504 -10.12739 -9.91888 -9.38107 -8.52869 -6.03683 0.06685 0.27153 0.73026 0.92555 1.11568 1.36020 1.43842 1.56656 1.85803 2.21854 2.40233 2.57800 2.98245 3.12754 3.46128 3.72561 3.91077 3.95537 3.99887 4.06432 4.11267 4.13375 4.19990 4.22184 4.39611 4.76307 5.08901 5.15585 5.23014 5.32327 5.36823 5.48057 5.88007 6.12695 6.42142 6.52644 7.02002 7.38761 7.91489 8.63982 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.050605 B = 0.001866 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.170489 B =14998.190613 C =15530.880217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.072 3.928 13 O -0.334 6.334 14 C 0.462 3.538 15 O -0.521 6.521 16 C 0.074 3.926 17 O -0.316 6.316 18 C 0.127 3.873 19 C -0.203 4.203 20 C -0.060 4.060 21 C -0.147 4.147 22 C -0.007 4.007 23 Cl -0.064 7.064 24 C -0.160 4.160 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 -25.286 0.039 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.005 4.005 13 O -0.249 6.249 14 C 0.305 3.695 15 O -0.410 6.410 16 C -0.001 4.001 17 O -0.230 6.230 18 C 0.082 3.918 19 C -0.222 4.222 20 C -0.078 4.078 21 C -0.166 4.166 22 C -0.033 4.033 23 Cl -0.035 7.035 24 C -0.180 4.180 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.173 0.827 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.383 -25.238 0.044 26.032 hybrid contribution -0.774 0.869 -0.011 1.164 sum 5.609 -24.368 0.033 25.006 Atomic orbital electron populations 1.69670 1.06981 1.29752 1.49110 1.26144 0.96582 1.02659 0.95652 0.84842 0.77910 0.76303 0.78776 1.19478 1.19563 1.19428 1.19735 0.93004 0.83298 1.50642 0.89567 1.41748 1.09602 1.04210 1.63919 1.20035 0.88072 0.85278 0.84240 1.90528 1.15303 1.87661 1.56799 1.22575 0.90075 0.82163 1.05651 1.86479 1.40566 1.14316 1.83535 1.23655 0.88553 0.84800 0.72452 1.90705 1.18015 1.86710 1.45536 1.22112 0.90824 0.78430 1.08714 1.86025 1.35749 1.12109 1.89141 1.18883 0.91362 0.84338 0.97196 1.21774 0.91844 1.01884 1.06680 1.21334 1.01887 0.90037 0.94535 1.21334 0.91244 1.00774 1.03239 1.20684 0.93001 0.86379 1.03279 1.98384 1.77225 1.31129 1.96807 1.20279 1.01150 0.88952 1.07575 0.90972 0.76556 0.87369 0.87378 0.84161 0.84161 0.82085 0.81251 0.82723 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.00 13.05 21.66 0.28 -47.72 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 41.30 29.55 68.60 2.03 43.33 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -27.91 5.29 -306.98 -1.62 -29.53 16 10 C 0.44 20.59 7.86 87.66 0.69 21.28 16 11 O -0.62 -33.70 16.08 15.72 0.25 -33.44 16 12 C 0.07 2.60 5.94 71.24 0.42 3.02 16 13 O -0.33 -11.22 9.76 -45.06 -0.44 -11.66 16 14 C 0.46 13.21 8.03 71.23 0.57 13.78 16 15 O -0.52 -18.06 16.25 28.37 0.46 -17.60 16 16 C 0.07 1.38 5.33 71.23 0.38 1.76 16 17 O -0.32 -7.18 9.67 -73.41 -0.71 -7.89 16 18 C 0.13 2.37 6.69 22.50 0.15 2.52 16 19 C -0.20 -2.57 9.04 22.37 0.20 -2.37 16 20 C -0.06 -0.59 10.04 22.25 0.22 -0.37 16 21 C -0.15 -1.76 9.83 22.31 0.22 -1.54 16 22 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 23 Cl -0.06 -1.01 28.95 -2.72 -0.08 -1.09 16 24 C -0.16 -3.07 9.77 22.39 0.22 -2.85 16 25 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 26 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 27 H 0.11 3.49 8.13 -2.39 -0.02 3.47 16 28 H 0.11 3.48 8.13 -2.38 -0.02 3.47 16 29 H 0.14 1.77 7.65 -2.38 -0.02 1.75 16 30 H 0.14 1.78 7.67 -2.39 -0.02 1.76 16 31 H 0.16 1.24 6.30 -2.91 -0.02 1.23 16 32 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -71.50 329.37 5.11 -66.39 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.43 Total: 21.72 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 4.50 Total: 17.49 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.34 Total: -77.25 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -0.44 Total: -70.59 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -71.50 5.11 -66.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731233709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.842 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds