Wall clock time and date at job start Tue Mar 31 2020 04:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86809 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47051 * 300.00422 * 3 2 1 6 6 H 1.48504 * 109.46607 * 60.00177 * 3 2 1 7 7 C 1.38951 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00011 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99710 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99957 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47137 * 180.02562 * 12 10 9 14 14 C 1.34229 * 117.00163 * 179.97438 * 13 12 10 15 15 O 1.20827 * 120.00329 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99999 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.35929 * 117.00101 * 180.02562 * 17 16 14 19 19 C 1.38701 * 120.05648 * 359.95940 * 18 17 16 20 20 C 1.38153 * 119.95853 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.07157 * 0.02562 * 20 19 18 22 22 C 1.38238 * 120.11971 * 0.02562 * 21 20 19 23 23 C 1.38255 * 120.04624 * 359.94924 * 22 21 20 24 24 Cl 1.73604 * 120.04140 * 180.02562 * 23 22 21 25 25 H 0.96993 * 120.00023 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00102 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47544 * 60.00607 * 12 10 9 28 28 H 1.09003 * 109.47486 * 300.00125 * 12 10 9 29 29 H 1.09004 * 109.46884 * 60.00529 * 16 14 13 30 30 H 1.08996 * 109.47098 * 300.00251 * 16 14 13 31 31 H 1.08003 * 120.02367 * 0.04181 * 19 18 17 32 32 H 1.08001 * 119.96476 * 180.29683 * 20 19 18 33 33 H 1.08006 * 119.93616 * 179.97438 * 21 20 19 34 34 H 1.08008 * 119.97717 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8628 -0.0022 13 8 2.1875 -5.9665 -0.0027 14 6 1.6745 -7.2068 -0.0027 15 8 0.4767 -7.3653 -0.0028 16 6 2.5926 -8.4020 -0.0038 17 8 1.8144 -9.6005 -0.0042 18 6 2.4940 -10.7776 -0.0046 19 6 3.8811 -10.7790 -0.0055 20 6 4.5698 -11.9766 -0.0065 21 6 3.8778 -13.1739 -0.0071 22 6 2.4955 -13.1761 -0.0073 23 6 1.8012 -11.9805 -0.0058 24 17 0.0652 -11.9835 -0.0054 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0005 27 1 0.6170 -4.9201 -0.8920 28 1 0.6176 -4.9212 0.8880 29 1 3.2221 -8.3774 0.8858 30 1 3.2208 -8.3768 -0.8942 31 1 4.4224 -9.8444 -0.0052 32 1 5.6498 -11.9778 -0.0023 33 1 4.4185 -14.1089 -0.0083 34 1 1.9573 -14.1126 -0.0082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731234521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:30 Heat of formation + Delta-G solvation = -131.456273 kcal Electronic energy + Delta-G solvation = -21970.556365 eV Core-core repulsion = 18088.460192 eV Total energy + Delta-G solvation = -3882.096173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90461 -40.11096 -38.29504 -37.78073 -36.59643 -36.13531 -34.04673 -31.45178 -31.32650 -30.87038 -29.39199 -27.78237 -24.67374 -23.33310 -22.81387 -21.03302 -19.64816 -18.96843 -18.11109 -17.58396 -17.09321 -16.99211 -16.48622 -15.95311 -15.83230 -15.43220 -14.96961 -14.56243 -14.28983 -14.19398 -14.03550 -13.48190 -13.45847 -12.83649 -12.38811 -12.32853 -12.07364 -11.81669 -11.65758 -11.63208 -11.52486 -11.17931 -11.04960 -10.52255 -10.48757 -10.41709 -10.32558 -9.65419 -9.32281 -8.62229 -8.58157 -8.12295 -6.53342 -3.95632 0.71366 0.87567 1.82312 1.97815 2.12050 3.09365 3.18616 3.19379 3.22983 3.30289 3.68743 4.06032 4.29908 4.32264 4.53241 4.60688 4.68428 4.77490 4.82558 4.95864 5.02805 5.11431 5.27562 5.46054 5.62780 5.63212 5.75704 5.97120 5.99050 6.16265 6.46253 6.76094 7.44836 7.70339 7.90859 8.43993 9.03391 9.35083 9.84362 10.63808 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.002162 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.111343 B =12948.379949 C =13726.044508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.322 6.322 14 C 0.460 3.540 15 O -0.487 6.487 16 C 0.069 3.931 17 O -0.282 6.282 18 C 0.141 3.859 19 C -0.199 4.199 20 C -0.073 4.073 21 C -0.147 4.147 22 C -0.073 4.073 23 C -0.067 4.067 24 Cl -0.051 7.051 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -25.060 -0.009 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.014 4.014 13 O -0.237 6.237 14 C 0.301 3.699 15 O -0.373 6.373 16 C -0.008 4.008 17 O -0.195 6.195 18 C 0.095 3.905 19 C -0.218 4.218 20 C -0.092 4.092 21 C -0.165 4.165 22 C -0.092 4.092 23 C -0.095 4.095 24 Cl -0.022 7.022 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.946 -24.847 -0.009 25.334 hybrid contribution -0.401 0.955 0.001 1.036 sum 4.545 -23.892 -0.009 24.321 Atomic orbital electron populations 1.69621 1.06015 1.28465 1.49516 1.25335 0.95703 0.99929 0.96826 0.85733 0.79696 0.80683 0.77835 1.19068 1.20594 1.20589 1.19775 0.93513 0.81680 1.48193 0.87512 1.41710 1.09426 1.04073 1.63620 1.19263 0.88314 0.84001 0.86182 1.90562 1.13368 1.86756 1.55405 1.22825 0.90710 0.84056 1.03852 1.86479 1.40466 1.13546 1.83166 1.22757 0.88223 0.84790 0.74150 1.90725 1.16322 1.86532 1.43733 1.21926 0.92142 0.80794 1.05891 1.86169 1.33994 1.11114 1.88232 1.18682 0.90458 0.84784 0.96623 1.21348 0.91901 1.00531 1.08013 1.21089 1.00463 0.91536 0.96083 1.21069 0.93304 0.98705 1.03434 1.20952 0.94346 0.96060 0.97860 1.20239 0.85939 0.92172 1.11120 1.98396 1.08031 1.98849 1.96969 0.91615 0.77101 0.89238 0.89246 0.87146 0.87150 0.84063 0.84852 0.84856 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 2 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 3 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.74 5.29 -10.97 -0.06 -13.80 16 10 C 0.44 10.34 7.86 -10.99 -0.09 10.25 16 11 O -0.58 -15.67 16.08 -14.11 -0.23 -15.89 16 12 C 0.06 1.17 5.94 36.00 0.21 1.38 16 13 O -0.32 -5.69 9.75 -45.90 -0.45 -6.13 16 14 C 0.46 7.06 8.03 36.01 0.29 7.35 16 15 O -0.49 -8.81 16.25 -25.48 -0.41 -9.23 16 16 C 0.07 0.75 5.33 36.01 0.19 0.94 16 17 O -0.28 -3.57 9.13 -39.47 -0.36 -3.93 16 18 C 0.14 1.50 6.68 -39.20 -0.26 1.24 16 19 C -0.20 -1.59 9.04 -39.44 -0.36 -1.95 16 20 C -0.07 -0.48 10.04 -39.60 -0.40 -0.87 16 21 C -0.15 -0.92 10.04 -39.56 -0.40 -1.32 16 22 C -0.07 -0.56 9.83 -39.58 -0.39 -0.95 16 23 C -0.07 -0.70 6.33 -39.36 -0.25 -0.94 16 24 Cl -0.05 -0.59 28.51 -51.86 -1.48 -2.07 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 27 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 28 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 29 H 0.11 0.92 7.66 -51.93 -0.40 0.52 16 30 H 0.11 0.92 7.66 -51.93 -0.40 0.52 16 31 H 0.14 0.86 6.30 -52.48 -0.33 0.53 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -33.59 328.67 -7.09 -40.68 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.07 Total: 5.80 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.68 Total: 7.28 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.67 Total: -36.92 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.45 Total: -35.19 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.59 -7.09 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.775 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds