Wall clock time and date at job start Tue Mar 31 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86809 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47051 * 300.00422 * 3 2 1 6 6 H 1.48504 * 109.46607 * 60.00177 * 3 2 1 7 7 C 1.38951 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00011 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99710 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99957 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47137 * 180.02562 * 12 10 9 14 14 C 1.34229 * 117.00163 * 179.97438 * 13 12 10 15 15 O 1.20827 * 120.00329 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99999 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.35929 * 117.00101 * 180.02562 * 17 16 14 19 19 C 1.38701 * 120.05648 * 359.95940 * 18 17 16 20 20 C 1.38153 * 119.95853 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.07157 * 0.02562 * 20 19 18 22 22 C 1.38238 * 120.11971 * 0.02562 * 21 20 19 23 23 C 1.38255 * 120.04624 * 359.94924 * 22 21 20 24 24 Cl 1.73604 * 120.04140 * 180.02562 * 23 22 21 25 25 H 0.96993 * 120.00023 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00102 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47544 * 60.00607 * 12 10 9 28 28 H 1.09003 * 109.47486 * 300.00125 * 12 10 9 29 29 H 1.09004 * 109.46884 * 60.00529 * 16 14 13 30 30 H 1.08996 * 109.47098 * 300.00251 * 16 14 13 31 31 H 1.08003 * 120.02367 * 0.04181 * 19 18 17 32 32 H 1.08001 * 119.96476 * 180.29683 * 20 19 18 33 33 H 1.08006 * 119.93616 * 179.97438 * 21 20 19 34 34 H 1.08008 * 119.97717 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8628 -0.0022 13 8 2.1875 -5.9665 -0.0027 14 6 1.6745 -7.2068 -0.0027 15 8 0.4767 -7.3653 -0.0028 16 6 2.5926 -8.4020 -0.0038 17 8 1.8144 -9.6005 -0.0042 18 6 2.4940 -10.7776 -0.0046 19 6 3.8811 -10.7790 -0.0055 20 6 4.5698 -11.9766 -0.0065 21 6 3.8778 -13.1739 -0.0071 22 6 2.4955 -13.1761 -0.0073 23 6 1.8012 -11.9805 -0.0058 24 17 0.0652 -11.9835 -0.0054 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0005 27 1 0.6170 -4.9201 -0.8920 28 1 0.6176 -4.9212 0.8880 29 1 3.2221 -8.3774 0.8858 30 1 3.2208 -8.3768 -0.8942 31 1 4.4224 -9.8444 -0.0052 32 1 5.6498 -11.9778 -0.0023 33 1 4.4185 -14.1089 -0.0083 34 1 1.9573 -14.1126 -0.0082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:29 Heat of formation + Delta-G solvation = -152.177542 kcal Electronic energy + Delta-G solvation = -21971.454907 eV Core-core repulsion = 18088.460192 eV Total energy + Delta-G solvation = -3882.994715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95271 -41.09432 -40.04380 -38.63114 -37.51503 -37.33362 -36.05084 -33.43861 -31.99602 -31.60002 -30.50322 -29.05544 -26.55807 -24.05982 -23.46462 -22.15164 -21.46584 -20.10681 -19.72976 -18.75562 -18.21567 -18.12577 -17.44424 -17.19746 -16.92823 -16.78577 -16.27722 -15.74503 -15.67631 -15.52763 -14.87700 -14.77449 -14.40791 -14.11302 -13.86639 -13.58110 -13.49124 -12.95367 -12.86434 -12.60102 -12.47533 -12.27911 -12.20317 -12.10784 -11.95799 -11.81558 -11.67566 -11.59733 -10.54320 -10.13390 -9.91043 -9.28400 -8.53555 -6.04342 0.13583 0.28728 0.79467 0.92457 1.21951 1.34149 1.43305 1.57801 1.84750 2.18430 2.36293 2.63455 2.96926 3.12000 3.45936 3.74597 3.83369 3.93541 4.01129 4.02263 4.12236 4.19007 4.22373 4.34715 4.43467 4.77556 5.07926 5.14948 5.27092 5.36459 5.44983 5.63502 5.87474 6.08090 6.41657 6.52401 7.01419 7.37964 7.90638 8.63624 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.002162 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.111343 B =12948.379949 C =13726.044508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.072 3.928 13 O -0.334 6.334 14 C 0.462 3.538 15 O -0.519 6.519 16 C 0.074 3.926 17 O -0.311 6.311 18 C 0.115 3.885 19 C -0.201 4.201 20 C -0.071 4.071 21 C -0.139 4.139 22 C -0.078 4.078 23 C -0.091 4.091 24 Cl -0.076 7.076 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -26.042 -0.010 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.005 4.005 13 O -0.249 6.249 14 C 0.305 3.695 15 O -0.407 6.407 16 C -0.001 4.001 17 O -0.225 6.225 18 C 0.069 3.931 19 C -0.219 4.219 20 C -0.089 4.089 21 C -0.158 4.158 22 C -0.096 4.096 23 C -0.118 4.118 24 Cl -0.047 7.047 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.535 -25.853 -0.010 26.666 hybrid contribution -0.843 1.126 0.001 1.407 sum 5.692 -24.727 -0.009 25.374 Atomic orbital electron populations 1.69681 1.07000 1.29699 1.49195 1.26159 0.96591 1.02691 0.95666 0.84782 0.78126 0.76499 0.78388 1.19394 1.19527 1.19515 1.19765 0.92980 0.83264 1.50526 0.89582 1.41757 1.09608 1.04227 1.63936 1.20016 0.88063 0.85252 0.84232 1.90526 1.15286 1.87654 1.56775 1.22570 0.90098 0.82205 1.05594 1.86477 1.40556 1.14293 1.83588 1.23627 0.88564 0.84768 0.72547 1.90710 1.17974 1.86669 1.45360 1.22103 0.90876 0.78606 1.08561 1.86104 1.35389 1.11987 1.89047 1.18942 0.91601 0.83962 0.98550 1.21635 0.90800 1.02172 1.07337 1.21522 1.02026 0.90900 0.94434 1.21489 0.92680 1.00126 1.01459 1.21238 0.95243 0.95757 0.97372 1.20561 0.84893 0.93319 1.13034 1.98377 1.10232 1.98917 1.97208 0.90969 0.76570 0.87437 0.87446 0.84279 0.84287 0.82220 0.81839 0.81813 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.42 13.05 21.66 0.28 -48.14 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.62 29.55 68.60 2.03 43.64 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.34 -18.65 9.68 84.04 0.81 -17.83 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.28 5.29 -307.00 -1.62 -29.90 16 10 C 0.44 20.93 7.86 87.66 0.69 21.62 16 11 O -0.62 -34.06 16.08 15.74 0.25 -33.80 16 12 C 0.07 2.67 5.94 71.23 0.42 3.09 16 13 O -0.33 -11.59 9.75 -45.05 -0.44 -12.03 16 14 C 0.46 13.86 8.03 71.24 0.57 14.43 16 15 O -0.52 -18.79 16.25 28.39 0.46 -18.33 16 16 C 0.07 1.49 5.33 71.24 0.38 1.87 16 17 O -0.31 -7.71 9.13 -73.68 -0.67 -8.38 16 18 C 0.12 2.32 6.68 22.52 0.15 2.47 16 19 C -0.20 -2.69 9.04 22.36 0.20 -2.49 16 20 C -0.07 -0.66 10.04 22.26 0.22 -0.44 16 21 C -0.14 -1.29 10.04 22.28 0.22 -1.06 16 22 C -0.08 -1.05 9.83 22.27 0.22 -0.84 16 23 C -0.09 -1.83 6.33 22.41 0.14 -1.69 16 24 Cl -0.08 -1.79 28.51 -2.72 -0.08 -1.87 16 25 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 27 H 0.11 3.58 8.13 -2.39 -0.02 3.56 16 28 H 0.11 3.58 8.13 -2.39 -0.02 3.56 16 29 H 0.14 1.98 7.66 -2.39 -0.02 1.96 16 30 H 0.14 1.98 7.66 -2.39 -0.02 1.96 16 31 H 0.16 1.42 6.30 -2.91 -0.02 1.40 16 32 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 33 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -74.20 328.67 5.15 -69.05 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.43 Total: 20.71 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 4.51 Total: 19.05 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.34 Total: -78.04 kcal Atomic # 8 Polarization: -72.15 SS G_CDS: -0.40 Total: -72.54 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -74.20 5.15 -69.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.127 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds