Wall clock time and date at job start Tue Mar 31 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99775 * 2 1 4 4 H 1.48502 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47326 * 299.99974 * 3 2 1 6 6 H 1.48500 * 109.47263 * 60.00210 * 3 2 1 7 7 C 1.38943 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00189 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00420 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99740 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00449 * 180.02562 * 10 9 7 13 13 O 1.45197 * 109.47129 * 179.97438 * 12 10 9 14 14 C 1.34226 * 116.99751 * 179.97438 * 13 12 10 15 15 O 1.20835 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00423 * 180.02562 * 14 13 12 17 17 O 1.42893 * 109.47853 * 180.02562 * 16 14 13 18 18 C 1.35916 * 117.00323 * 179.97438 * 17 16 14 19 19 C 1.38728 * 120.04362 * 0.27384 * 18 17 16 20 20 C 1.38137 * 119.95782 * 180.23553 * 19 18 17 21 21 C 1.38365 * 120.04335 * 359.48598 * 20 19 18 22 22 Cl 1.73604 * 119.96019 * 180.27880 * 21 20 19 23 23 C 1.38371 * 120.08418 * 0.25849 * 21 20 19 24 24 C 1.38143 * 120.04298 * 0.02562 * 23 21 20 25 25 H 0.97003 * 120.00321 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00283 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46766 * 59.99519 * 12 10 9 28 28 H 1.09002 * 109.46714 * 300.00455 * 12 10 9 29 29 H 1.08998 * 109.47224 * 59.99293 * 16 14 13 30 30 H 1.09008 * 109.46441 * 299.99794 * 16 14 13 31 31 H 1.07998 * 120.01718 * 359.97438 * 19 18 17 32 32 H 1.08002 * 119.98114 * 179.77139 * 20 19 18 33 33 H 1.08001 * 119.97793 * 180.02562 * 23 21 20 34 34 H 1.07998 * 120.01925 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4766 -7.3652 -0.0008 16 6 2.5925 -8.4021 -0.0016 17 8 1.8143 -9.6005 -0.0022 18 6 2.4939 -10.7776 -0.0027 19 6 3.8812 -10.7786 0.0031 20 6 4.5701 -11.9759 -0.0024 21 6 3.8774 -13.1737 -0.0030 22 17 4.7455 -14.6772 -0.0026 23 6 2.4937 -13.1748 -0.0034 24 6 1.8012 -11.9795 -0.0039 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6176 -4.9204 -0.8913 28 1 0.6169 -4.9208 0.8886 29 1 3.2213 -8.3772 0.8884 30 1 3.2213 -8.3771 -0.8916 31 1 4.4221 -9.8439 0.0076 32 1 5.6501 -11.9771 -0.0016 33 1 1.9548 -14.1107 -0.0034 34 1 0.7212 -11.9807 -0.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:32 Heat of formation + Delta-G solvation = -134.234569 kcal Electronic energy + Delta-G solvation = -21686.282726 eV Core-core repulsion = 17804.066076 eV Total energy + Delta-G solvation = -3882.216649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93885 -40.14636 -38.35770 -37.93555 -36.59121 -36.14339 -34.06426 -31.74701 -31.44853 -30.68937 -29.35287 -27.79636 -24.68885 -23.48983 -22.74527 -21.08452 -19.67125 -18.95477 -18.12949 -17.64333 -17.11867 -17.10823 -16.60188 -15.96929 -15.82732 -15.46480 -14.93129 -14.57613 -14.18799 -14.07106 -14.01023 -13.63995 -13.58383 -12.89689 -12.64421 -12.55833 -12.11687 -12.10306 -11.73683 -11.66782 -11.19233 -11.17981 -11.12506 -10.55801 -10.53190 -10.42773 -10.34020 -9.66879 -9.58766 -8.60036 -8.58747 -8.13813 -6.54799 -3.97132 0.74346 0.78490 1.74907 1.89155 2.07172 3.08326 3.15889 3.18605 3.22458 3.29617 3.66970 4.04383 4.21934 4.33682 4.43489 4.59721 4.65492 4.72824 4.87934 4.94490 5.04484 5.09862 5.42325 5.44836 5.50515 5.60523 5.75668 5.79602 5.96890 6.07361 6.42509 6.79771 7.43470 7.65751 7.89138 8.42343 9.01951 9.33412 9.82656 10.62291 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.049082 B = 0.001829 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.341535 B =15306.236644 C =15856.130850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.461 3.539 15 O -0.490 6.490 16 C 0.068 3.932 17 O -0.290 6.290 18 C 0.139 3.861 19 C -0.198 4.198 20 C -0.067 4.067 21 C -0.074 4.074 22 Cl -0.073 7.073 23 C -0.070 4.070 24 C -0.135 4.135 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -24.696 -0.001 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.014 4.014 13 O -0.236 6.236 14 C 0.302 3.698 15 O -0.377 6.377 16 C -0.008 4.008 17 O -0.203 6.203 18 C 0.093 3.907 19 C -0.217 4.217 20 C -0.086 4.086 21 C -0.101 4.101 22 Cl -0.044 7.044 23 C -0.088 4.088 24 C -0.154 4.154 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.694 -24.621 -0.001 25.065 hybrid contribution -0.158 0.826 -0.001 0.841 sum 4.536 -23.796 -0.001 24.224 Atomic orbital electron populations 1.69620 1.06019 1.28478 1.49475 1.25328 0.95702 0.99930 0.96791 0.85730 0.79699 0.80663 0.77839 1.19069 1.20591 1.20587 1.19781 0.93531 0.81683 1.48232 0.87497 1.41705 1.09417 1.04066 1.63586 1.19262 0.88320 0.83998 0.86243 1.90565 1.13365 1.86744 1.55412 1.22831 0.90700 0.84062 1.03853 1.86483 1.40473 1.13555 1.83070 1.22788 0.88198 0.84843 0.74009 1.90716 1.16389 1.86595 1.43994 1.21924 0.92126 0.80766 1.05954 1.86101 1.34454 1.11382 1.88348 1.19074 0.90554 0.85606 0.95436 1.21321 0.92872 0.99542 1.07958 1.20862 1.00601 0.89998 0.97122 1.20819 0.92519 0.87304 1.09450 1.98370 1.76706 1.32173 1.97181 1.20875 0.91867 0.98391 0.97712 1.20419 1.01096 0.88729 1.05130 0.91609 0.77108 0.89231 0.89224 0.87116 0.87126 0.83982 0.84410 0.84110 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 13.05 55.50 0.72 -22.91 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.58 5.29 -10.97 -0.06 -13.64 16 10 C 0.44 10.20 7.86 -10.98 -0.09 10.11 16 11 O -0.58 -15.54 16.08 -14.11 -0.23 -15.76 16 12 C 0.06 1.14 5.94 36.01 0.21 1.35 16 13 O -0.32 -5.53 9.75 -45.89 -0.45 -5.98 16 14 C 0.46 6.78 8.03 36.01 0.29 7.07 16 15 O -0.49 -8.50 16.25 -25.48 -0.41 -8.91 16 16 C 0.07 0.70 5.33 36.01 0.19 0.89 16 17 O -0.29 -3.32 9.67 -39.43 -0.38 -3.70 16 18 C 0.14 1.32 6.69 -39.22 -0.26 1.06 16 19 C -0.20 -1.56 9.04 -39.44 -0.36 -1.91 16 20 C -0.07 -0.50 9.82 -39.57 -0.39 -0.89 16 21 C -0.07 -0.59 6.32 -39.49 -0.25 -0.84 16 22 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 23 C -0.07 -0.52 9.82 -39.57 -0.39 -0.91 16 24 C -0.13 -1.14 9.99 -39.44 -0.39 -1.53 16 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.40 9.23 7.90 -40.82 -0.32 8.91 16 27 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 28 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 29 H 0.11 0.86 7.65 -51.93 -0.40 0.46 16 30 H 0.11 0.86 7.67 -51.92 -0.40 0.46 16 31 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -32.65 329.37 -7.11 -39.75 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.07 Total: 6.32 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.67 Total: 6.61 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.67 Total: -36.54 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.47 Total: -34.36 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.65 -7.11 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.480 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds