Wall clock time and date at job start Tue Mar 31 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99775 * 2 1 4 4 H 1.48502 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47326 * 299.99974 * 3 2 1 6 6 H 1.48500 * 109.47263 * 60.00210 * 3 2 1 7 7 C 1.38943 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00189 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00420 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99740 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00449 * 180.02562 * 10 9 7 13 13 O 1.45197 * 109.47129 * 179.97438 * 12 10 9 14 14 C 1.34226 * 116.99751 * 179.97438 * 13 12 10 15 15 O 1.20835 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00423 * 180.02562 * 14 13 12 17 17 O 1.42893 * 109.47853 * 180.02562 * 16 14 13 18 18 C 1.35916 * 117.00323 * 179.97438 * 17 16 14 19 19 C 1.38728 * 120.04362 * 0.27384 * 18 17 16 20 20 C 1.38137 * 119.95782 * 180.23553 * 19 18 17 21 21 C 1.38365 * 120.04335 * 359.48598 * 20 19 18 22 22 Cl 1.73604 * 119.96019 * 180.27880 * 21 20 19 23 23 C 1.38371 * 120.08418 * 0.25849 * 21 20 19 24 24 C 1.38143 * 120.04298 * 0.02562 * 23 21 20 25 25 H 0.97003 * 120.00321 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00283 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46766 * 59.99519 * 12 10 9 28 28 H 1.09002 * 109.46714 * 300.00455 * 12 10 9 29 29 H 1.08998 * 109.47224 * 59.99293 * 16 14 13 30 30 H 1.09008 * 109.46441 * 299.99794 * 16 14 13 31 31 H 1.07998 * 120.01718 * 359.97438 * 19 18 17 32 32 H 1.08002 * 119.98114 * 179.77139 * 20 19 18 33 33 H 1.08001 * 119.97793 * 180.02562 * 23 21 20 34 34 H 1.07998 * 120.01925 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4766 -7.3652 -0.0008 16 6 2.5925 -8.4021 -0.0016 17 8 1.8143 -9.6005 -0.0022 18 6 2.4939 -10.7776 -0.0027 19 6 3.8812 -10.7786 0.0031 20 6 4.5701 -11.9759 -0.0024 21 6 3.8774 -13.1737 -0.0030 22 17 4.7455 -14.6772 -0.0026 23 6 2.4937 -13.1748 -0.0034 24 6 1.8012 -11.9795 -0.0039 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6176 -4.9204 -0.8913 28 1 0.6169 -4.9208 0.8886 29 1 3.2213 -8.3772 0.8884 30 1 3.2213 -8.3771 -0.8916 31 1 4.4221 -9.8439 0.0076 32 1 5.6501 -11.9771 -0.0016 33 1 1.9548 -14.1107 -0.0034 34 1 0.7212 -11.9807 -0.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:32 Heat of formation + Delta-G solvation = -153.714470 kcal Electronic energy + Delta-G solvation = -21687.127438 eV Core-core repulsion = 17804.066076 eV Total energy + Delta-G solvation = -3883.061361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94646 -41.09910 -40.03810 -38.78065 -37.56818 -37.10607 -36.04534 -33.43230 -32.35077 -31.49463 -30.41422 -29.02921 -26.54927 -24.17268 -23.45168 -22.15702 -21.45829 -20.09945 -19.68777 -18.77038 -18.19855 -18.14136 -17.44956 -17.39343 -16.88129 -16.77429 -16.27431 -15.74825 -15.64127 -15.50845 -14.79842 -14.56650 -14.41677 -14.19397 -13.95188 -13.57900 -13.51282 -13.23531 -12.96452 -12.90047 -12.46985 -12.37394 -12.10691 -11.94966 -11.84550 -11.77127 -11.61106 -11.59170 -10.53512 -10.15623 -10.12634 -9.22664 -8.53116 -6.03782 0.13600 0.20313 0.81907 0.93063 1.19455 1.34585 1.43859 1.58067 1.85626 2.20314 2.38517 2.56289 2.98245 3.12598 3.45904 3.70685 3.81227 3.93016 3.95498 4.03777 4.13058 4.13741 4.20367 4.32014 4.48220 4.89471 4.92547 5.15106 5.17159 5.22400 5.37027 5.48996 5.88112 6.12321 6.42325 6.52933 7.02177 7.38802 7.91679 8.63967 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.049082 B = 0.001829 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.341535 B =15306.236644 C =15856.130850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.073 3.927 13 O -0.335 6.335 14 C 0.463 3.537 15 O -0.520 6.520 16 C 0.073 3.927 17 O -0.313 6.313 18 C 0.121 3.879 19 C -0.196 4.196 20 C -0.071 4.071 21 C -0.082 4.082 22 Cl -0.072 7.072 23 C -0.070 4.070 24 C -0.144 4.144 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -25.275 0.001 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.004 4.004 13 O -0.250 6.250 14 C 0.306 3.694 15 O -0.408 6.408 16 C -0.002 4.002 17 O -0.227 6.227 18 C 0.076 3.924 19 C -0.215 4.215 20 C -0.089 4.089 21 C -0.109 4.109 22 Cl -0.043 7.043 23 C -0.088 4.088 24 C -0.163 4.163 25 H 0.090 0.910 26 H 0.235 0.765 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.224 -25.225 0.001 25.760 hybrid contribution -0.331 0.886 -0.001 0.946 sum 4.893 -24.339 0.000 24.826 Atomic orbital electron populations 1.69677 1.06964 1.29682 1.49173 1.26130 0.96578 1.02626 0.95661 0.84790 0.78110 0.76569 0.78377 1.19470 1.19545 1.19534 1.19767 0.92991 0.83318 1.50566 0.89617 1.41747 1.09603 1.04202 1.63931 1.20053 0.88071 0.85307 0.84212 1.90530 1.15348 1.87671 1.56790 1.22571 0.90052 0.82127 1.05683 1.86479 1.40609 1.14361 1.83537 1.23634 0.88552 0.84763 0.72466 1.90702 1.17933 1.86699 1.45511 1.22104 0.90903 0.78650 1.08591 1.86048 1.35564 1.12073 1.88996 1.19268 0.91341 0.85059 0.96771 1.21530 0.92266 1.00548 1.07156 1.21109 1.01556 0.89707 0.96563 1.21005 0.92840 0.87615 1.09416 1.98372 1.76654 1.32125 1.97169 1.21063 0.91925 0.98770 0.97088 1.20587 1.01529 0.88911 1.05294 0.90974 0.76545 0.87334 0.87325 0.84313 0.84328 0.82035 0.82729 0.82450 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.85 13.05 21.66 0.28 -47.57 16 2 C -0.01 -0.47 5.50 84.92 0.47 -0.01 16 3 Si 1.00 41.30 29.55 68.60 2.03 43.33 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.34 -18.55 9.68 84.04 0.81 -17.73 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -27.85 5.29 -306.99 -1.62 -29.47 16 10 C 0.44 20.54 7.86 87.66 0.69 21.23 16 11 O -0.62 -33.77 16.08 15.74 0.25 -33.51 16 12 C 0.07 2.59 5.94 71.24 0.42 3.01 16 13 O -0.33 -11.19 9.75 -45.02 -0.44 -11.63 16 14 C 0.46 13.02 8.03 71.24 0.57 13.59 16 15 O -0.52 -17.63 16.25 28.37 0.46 -17.17 16 16 C 0.07 1.33 5.33 71.24 0.38 1.71 16 17 O -0.31 -6.74 9.67 -73.53 -0.71 -7.45 16 18 C 0.12 2.11 6.69 22.50 0.15 2.26 16 19 C -0.20 -2.65 9.04 22.36 0.20 -2.45 16 20 C -0.07 -0.91 9.82 22.28 0.22 -0.70 16 21 C -0.08 -1.17 6.32 22.33 0.14 -1.02 16 22 Cl -0.07 -0.99 28.95 -2.72 -0.08 -1.07 16 23 C -0.07 -0.95 9.82 22.28 0.22 -0.73 16 24 C -0.14 -2.29 9.99 22.36 0.22 -2.07 16 25 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 26 H 0.40 18.85 7.90 -92.71 -0.73 18.11 16 27 H 0.11 3.46 8.13 -2.39 -0.02 3.44 16 28 H 0.11 3.46 8.13 -2.39 -0.02 3.44 16 29 H 0.14 1.76 7.65 -2.39 -0.02 1.74 16 30 H 0.14 1.76 7.67 -2.38 -0.02 1.74 16 31 H 0.16 1.43 6.30 -2.91 -0.02 1.41 16 32 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.41 329.37 5.11 -65.30 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.43 Total: 22.14 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 4.50 Total: 17.10 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -1.34 Total: -77.04 kcal Atomic # 8 Polarization: -69.32 SS G_CDS: -0.44 Total: -69.76 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -70.41 5.11 -65.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.415 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds