Wall clock time and date at job start Tue Mar 31 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34814 * 116.99986 * 2 1 4 4 O 1.21538 * 120.00528 * 0.02562 * 3 2 1 5 5 C 1.47048 * 119.99840 * 180.02562 * 3 2 1 6 6 C 1.36703 * 125.16272 * 180.02562 * 5 3 2 7 7 C 1.36745 * 114.74034 * 179.97438 * 6 5 3 8 8 C 1.36701 * 114.74537 * 359.97438 * 7 6 5 9 9 C 1.47042 * 125.16212 * 179.97438 * 8 7 6 10 10 O 1.21544 * 120.00169 * 0.02562 * 9 8 7 11 11 O 1.34812 * 120.00146 * 179.97438 * 9 8 7 12 12 C 1.45206 * 117.00129 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.46813 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00325 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99496 * 180.02562 * 13 12 11 16 16 C 1.37093 * 119.99915 * 180.02562 * 15 13 12 17 17 H 1.08006 * 120.00232 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00354 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00370 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99910 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46834 * 89.99995 * 20 18 16 22 22 H 1.48492 * 109.47440 * 210.00373 * 20 18 16 23 23 H 1.48504 * 109.46948 * 330.00648 * 20 18 16 24 24 S 1.75837 * 109.67675 * 0.02562 * 8 7 6 25 25 H 1.09000 * 109.46958 * 59.99654 * 1 2 3 26 26 H 1.08996 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46968 * 299.99810 * 1 2 3 28 28 H 1.07995 * 122.62672 * 0.22993 * 6 5 3 29 29 H 1.08003 * 122.62253 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.46941 * 300.00027 * 12 11 9 31 31 H 1.09002 * 109.46876 * 60.00334 * 12 11 9 32 32 H 0.97001 * 119.99884 * 359.97438 * 15 13 12 33 33 H 0.96994 * 119.99738 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4023 2.2206 0.0005 5 6 3.5326 1.2781 -0.0006 6 6 4.2603 2.4354 -0.0001 7 6 5.6163 2.2587 -0.0003 8 6 6.0233 0.9537 -0.0003 9 6 7.4230 0.5032 -0.0009 10 8 8.3240 1.3189 -0.0011 11 8 7.7070 -0.8147 -0.0003 12 6 9.1106 -1.1866 -0.0016 13 6 9.2322 -2.6888 -0.0014 14 8 8.2342 -3.3780 0.0003 15 7 10.4500 -3.2662 -0.0019 16 6 10.5607 -4.6326 -0.0022 17 1 9.6721 -5.2464 -0.0016 18 6 11.8162 -5.2280 -0.0033 19 7 11.9223 -6.5378 -0.0031 20 14 13.3533 -4.1665 -0.0051 21 1 13.7619 -3.8849 1.3945 22 1 14.4489 -4.8829 -0.7060 23 1 13.0708 -2.8876 -0.7050 24 16 4.6190 -0.1045 -0.0008 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8003 3.4124 0.0044 29 1 6.3112 3.0855 0.0005 30 1 9.5924 -0.7836 -0.8924 31 1 9.5944 -0.7824 0.8876 32 1 11.2481 -2.7149 -0.0028 33 1 12.7988 -6.9533 -0.0042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:47 Heat of formation + Delta-G solvation = -155.696079 kcal Electronic energy + Delta-G solvation = -21942.631051 eV Core-core repulsion = 18061.527467 eV Total energy + Delta-G solvation = -3881.103584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75157 -40.48710 -38.51959 -37.89576 -36.72550 -36.20574 -34.10958 -31.84936 -31.14915 -29.03551 -28.10566 -26.13332 -24.48711 -22.60339 -22.07137 -19.75000 -19.45742 -19.27769 -18.60887 -17.86758 -17.21902 -16.81717 -16.58055 -16.20133 -16.05795 -15.62474 -15.00078 -14.44229 -14.43784 -13.91644 -13.77657 -13.55432 -13.06814 -13.01493 -12.85842 -12.53372 -12.48097 -12.35270 -12.23967 -11.40552 -11.29902 -11.24469 -11.05015 -10.82177 -10.69309 -10.66647 -10.08306 -9.71517 -9.43080 -9.03012 -8.72864 -8.33174 -6.42439 -3.95633 -0.47097 0.90619 1.38500 1.44436 2.17026 2.33351 2.33871 2.65439 2.96120 3.00953 3.10030 3.50045 4.00768 4.23192 4.35251 4.65967 4.71528 4.76525 4.80085 4.85261 5.07048 5.13294 5.22553 5.42966 5.46501 5.53565 5.61566 5.74514 5.85722 6.24334 7.20738 7.38821 7.53542 7.96595 8.43525 8.79958 9.25915 9.60483 10.69679 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002592 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.702863 B =10798.691029 C =11823.947159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.541 3.459 4 O -0.494 6.494 5 C -0.247 4.247 6 C -0.062 4.062 7 C -0.071 4.071 8 C -0.220 4.220 9 C 0.533 3.467 10 O -0.493 6.493 11 O -0.320 6.320 12 C 0.060 3.940 13 C 0.446 3.554 14 O -0.556 6.556 15 N -0.578 5.578 16 C -0.309 4.309 17 H 0.123 0.877 18 C 0.046 3.954 19 N -0.873 5.873 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.268 1.268 24 S 0.320 5.680 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.373 0.627 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.746 17.435 0.018 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.269 6.269 3 C 0.384 3.616 4 O -0.383 6.383 5 C -0.367 4.367 6 C -0.096 4.096 7 C -0.104 4.104 8 C -0.341 4.341 9 C 0.376 3.624 10 O -0.383 6.383 11 O -0.235 6.235 12 C -0.018 4.018 13 C 0.231 3.769 14 O -0.438 6.438 15 N -0.218 5.218 16 C -0.437 4.437 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.513 5.513 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.193 1.193 24 S 0.593 5.407 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.207 0.793 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.446 15.575 0.020 22.651 hybrid contribution 1.570 2.341 -0.020 2.819 sum -14.876 17.917 0.000 23.287 Atomic orbital electron populations 1.23366 0.74976 1.04317 1.02850 1.86592 1.24335 1.31757 1.84241 1.19712 0.86904 0.81968 0.73014 1.90879 1.65835 1.35895 1.45659 1.24102 0.94710 1.00069 1.17835 1.20480 0.92105 0.98869 0.98119 1.20503 0.95456 0.95607 0.98834 1.24118 0.95864 0.98533 1.15581 1.19737 0.87599 0.81565 0.73536 1.90876 1.46882 1.54819 1.45698 1.86611 1.30032 1.23639 1.83174 1.22852 0.78266 0.96643 1.04006 1.19121 0.84726 0.87250 0.85785 1.90613 1.35936 1.63645 1.53575 1.42023 1.05378 1.07956 1.66397 1.19423 0.96275 0.79227 1.48764 0.85952 1.25044 0.97837 0.95777 0.97204 1.69611 1.25114 1.08370 1.48157 0.86679 0.83414 0.80295 0.79119 1.19376 1.19920 1.19333 1.85051 0.90773 1.02951 1.61954 0.91521 0.87460 0.91513 0.82009 0.81783 0.89002 0.88983 0.79345 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.43 10.41 -40.81 -0.42 -3.86 16 3 C 0.54 5.88 7.95 34.30 0.27 6.15 16 4 O -0.49 -6.14 16.61 -19.29 -0.32 -6.46 16 5 C -0.25 -2.54 6.46 -36.57 -0.24 -2.78 16 6 C -0.06 -0.55 9.88 -40.68 -0.40 -0.96 16 7 C -0.07 -0.68 9.88 -40.68 -0.40 -1.08 16 8 C -0.22 -2.67 6.46 -36.57 -0.24 -2.90 16 9 C 0.53 7.94 7.95 34.30 0.27 8.22 16 10 O -0.49 -7.86 16.61 -19.30 -0.32 -8.18 16 11 O -0.32 -5.51 9.60 -47.48 -0.46 -5.97 16 12 C 0.06 1.02 5.96 36.01 0.21 1.24 16 13 C 0.45 10.00 7.86 -10.98 -0.09 9.91 16 14 O -0.56 -14.80 16.08 -14.11 -0.23 -15.03 16 15 N -0.58 -13.34 5.09 -10.96 -0.06 -13.39 16 16 C -0.31 -8.46 10.16 -14.94 -0.15 -8.61 16 17 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 18 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.74 13.96 55.50 0.77 -23.97 16 20 Si 0.88 18.67 27.74 -169.99 -4.71 13.95 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.16 6.52 56.52 0.37 -4.80 16 24 S 0.32 3.61 22.95 -107.50 -2.47 1.15 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.16 1.15 8.04 -52.49 -0.42 0.73 16 29 H 0.16 1.31 8.04 -52.48 -0.42 0.89 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 33 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -33.91 326.62 -5.82 -39.73 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.75 Total: 5.52 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 0.22 Total: 11.59 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.72 Total: -37.36 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.75 Total: -39.50 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.95 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.47 Total: 1.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.91 -5.82 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.970 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds