Wall clock time and date at job start Tue Mar 31 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34814 * 116.99986 * 2 1 4 4 O 1.21538 * 120.00528 * 0.02562 * 3 2 1 5 5 C 1.47048 * 119.99840 * 180.02562 * 3 2 1 6 6 C 1.36703 * 125.16272 * 180.02562 * 5 3 2 7 7 C 1.36745 * 114.74034 * 179.97438 * 6 5 3 8 8 C 1.36701 * 114.74537 * 359.97438 * 7 6 5 9 9 C 1.47042 * 125.16212 * 179.97438 * 8 7 6 10 10 O 1.21544 * 120.00169 * 0.02562 * 9 8 7 11 11 O 1.34812 * 120.00146 * 179.97438 * 9 8 7 12 12 C 1.45206 * 117.00129 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.46813 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00325 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99496 * 180.02562 * 13 12 11 16 16 C 1.37093 * 119.99915 * 180.02562 * 15 13 12 17 17 H 1.08006 * 120.00232 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00354 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00370 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99910 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46834 * 89.99995 * 20 18 16 22 22 H 1.48492 * 109.47440 * 210.00373 * 20 18 16 23 23 H 1.48504 * 109.46948 * 330.00648 * 20 18 16 24 24 S 1.75837 * 109.67675 * 0.02562 * 8 7 6 25 25 H 1.09000 * 109.46958 * 59.99654 * 1 2 3 26 26 H 1.08996 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46968 * 299.99810 * 1 2 3 28 28 H 1.07995 * 122.62672 * 0.22993 * 6 5 3 29 29 H 1.08003 * 122.62253 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.46941 * 300.00027 * 12 11 9 31 31 H 1.09002 * 109.46876 * 60.00334 * 12 11 9 32 32 H 0.97001 * 119.99884 * 359.97438 * 15 13 12 33 33 H 0.96994 * 119.99738 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4023 2.2206 0.0005 5 6 3.5326 1.2781 -0.0006 6 6 4.2603 2.4354 -0.0001 7 6 5.6163 2.2587 -0.0003 8 6 6.0233 0.9537 -0.0003 9 6 7.4230 0.5032 -0.0009 10 8 8.3240 1.3189 -0.0011 11 8 7.7070 -0.8147 -0.0003 12 6 9.1106 -1.1866 -0.0016 13 6 9.2322 -2.6888 -0.0014 14 8 8.2342 -3.3780 0.0003 15 7 10.4500 -3.2662 -0.0019 16 6 10.5607 -4.6326 -0.0022 17 1 9.6721 -5.2464 -0.0016 18 6 11.8162 -5.2280 -0.0033 19 7 11.9223 -6.5378 -0.0031 20 14 13.3533 -4.1665 -0.0051 21 1 13.7619 -3.8849 1.3945 22 1 14.4489 -4.8829 -0.7060 23 1 13.0708 -2.8876 -0.7050 24 16 4.6190 -0.1045 -0.0008 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8003 3.4124 0.0044 29 1 6.3112 3.0855 0.0005 30 1 9.5924 -0.7836 -0.8924 31 1 9.5944 -0.7824 0.8876 32 1 11.2481 -2.7149 -0.0028 33 1 12.7988 -6.9533 -0.0042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:47 Heat of formation + Delta-G solvation = -178.436449 kcal Electronic energy + Delta-G solvation = -21943.617147 eV Core-core repulsion = 18061.527467 eV Total energy + Delta-G solvation = -3882.089680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73411 -41.52656 -40.22330 -38.83583 -37.66090 -37.33644 -36.08988 -33.87062 -32.05820 -30.35175 -28.91791 -27.13552 -26.19590 -23.53288 -23.00688 -21.56235 -20.59492 -20.33725 -20.17618 -18.85733 -18.25209 -17.86102 -17.63912 -17.54846 -17.14740 -16.88022 -16.61582 -15.91000 -15.58009 -15.09104 -14.72183 -14.71355 -14.37271 -14.20619 -14.19850 -13.87188 -13.63990 -13.55648 -13.08257 -13.00304 -12.45587 -12.30228 -12.00459 -11.96496 -11.92031 -11.91804 -11.87999 -11.58717 -10.62443 -10.34275 -10.29303 -9.86537 -8.45738 -6.09082 -1.33440 0.04708 0.55786 0.58058 1.13672 1.31158 1.34270 1.40518 1.45362 1.47179 1.74182 1.76986 2.20791 2.73965 3.08677 3.49933 3.61657 3.84980 3.90544 4.08380 4.10831 4.12207 4.24266 4.31821 4.65941 4.72195 4.74566 5.02519 5.05928 5.12083 5.46994 5.85264 6.32919 6.41144 6.50468 6.77158 7.25360 7.76990 8.70774 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002592 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.702863 B =10798.691029 C =11823.947159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.542 3.458 4 O -0.512 6.512 5 C -0.243 4.243 6 C -0.051 4.051 7 C -0.045 4.045 8 C -0.243 4.243 9 C 0.539 3.461 10 O -0.504 6.504 11 O -0.342 6.342 12 C 0.069 3.931 13 C 0.448 3.552 14 O -0.607 6.607 15 N -0.575 5.575 16 C -0.333 4.333 17 H 0.061 0.939 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.961 3.039 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.230 1.230 24 S 0.291 5.709 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.187 0.813 29 H 0.187 0.813 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.394 0.606 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 20.891 -0.022 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.386 3.614 4 O -0.403 6.403 5 C -0.363 4.363 6 C -0.084 4.084 7 C -0.079 4.079 8 C -0.363 4.363 9 C 0.382 3.618 10 O -0.394 6.394 11 O -0.258 6.258 12 C -0.008 4.008 13 C 0.235 3.765 14 O -0.492 6.492 15 N -0.217 5.217 16 C -0.461 4.461 17 H 0.079 0.921 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.179 1.179 22 H -0.198 1.198 23 H -0.153 1.153 24 S 0.564 5.436 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.089 0.911 28 H 0.204 0.796 29 H 0.204 0.796 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.230 0.770 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.524 19.042 -0.021 24.568 hybrid contribution 1.059 1.241 -0.003 1.632 sum -14.465 20.284 -0.025 24.913 Atomic orbital electron populations 1.23682 0.73168 1.06169 1.03273 1.86594 1.26207 1.31253 1.83789 1.19784 0.87035 0.82037 0.72533 1.90868 1.66210 1.36427 1.46745 1.24203 0.94520 1.00017 1.17575 1.20761 0.91686 0.99436 0.96556 1.20784 0.95969 0.95081 0.96047 1.24013 0.94526 0.99461 1.18343 1.19968 0.88535 0.80430 0.72832 1.90861 1.47419 1.54601 1.46564 1.86604 1.29957 1.25431 1.83774 1.22725 0.79161 0.91958 1.06963 1.20135 0.83616 0.89712 0.83063 1.90592 1.37696 1.65766 1.55103 1.41794 1.06664 1.06455 1.66769 1.18994 0.94979 0.81065 1.51103 0.92092 1.26100 1.01810 0.97334 0.95569 1.69781 1.26654 1.11032 1.49040 0.85420 0.76978 0.79371 0.80175 1.17928 1.19801 1.15278 1.85182 0.91425 1.03941 1.63082 0.91109 0.85000 0.91100 0.79550 0.79592 0.85945 0.85843 0.77004 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.78 10.41 -57.26 -0.60 -7.37 16 3 C 0.54 11.17 7.95 70.13 0.56 11.73 16 4 O -0.51 -12.03 16.61 19.71 0.33 -11.70 16 5 C -0.24 -4.66 6.46 24.22 0.16 -4.50 16 6 C -0.05 -0.77 9.88 21.56 0.21 -0.56 16 7 C -0.05 -0.74 9.88 21.56 0.21 -0.53 16 8 C -0.24 -5.52 6.46 24.22 0.16 -5.36 16 9 C 0.54 15.11 7.95 70.13 0.56 15.66 16 10 O -0.50 -14.68 16.61 19.69 0.33 -14.36 16 11 O -0.34 -11.45 9.60 -50.85 -0.49 -11.94 16 12 C 0.07 2.20 5.96 71.24 0.42 2.62 16 13 C 0.45 20.08 7.86 87.66 0.69 20.77 16 14 O -0.61 -33.66 16.08 15.73 0.25 -33.41 16 15 N -0.57 -26.32 5.09 -306.98 -1.56 -27.89 16 16 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 17 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 18 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 19 N -0.93 -54.18 13.96 21.66 0.30 -53.87 16 20 Si 0.96 37.16 27.74 68.60 1.90 39.07 16 21 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.23 -7.40 6.52 99.48 0.65 -6.76 16 24 S 0.29 6.48 22.95 -56.49 -1.30 5.18 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.19 1.96 8.04 -2.91 -0.02 1.94 16 29 H 0.19 2.24 8.04 -2.91 -0.02 2.22 16 30 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.39 14.63 5.76 -92.71 -0.53 14.10 16 33 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -78.11 326.62 5.25 -72.86 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.59 Total: 20.10 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 5.49 Total: 23.33 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.26 Total: -81.76 kcal Atomic # 8 Polarization: -78.60 SS G_CDS: -0.18 Total: -78.78 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.90 Total: 39.07 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.30 Total: 5.18 kcal Total: -78.11 5.25 -72.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.577 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds