Wall clock time and date at job start Tue Mar 31 2020 04:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00289 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99704 * 3 2 1 5 5 H 1.48504 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47109 * 119.99844 * 3 2 1 7 7 C 1.37876 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00703 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99596 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99966 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00332 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99691 * 180.02562 * 11 10 9 14 14 O 1.45199 * 109.47064 * 179.97438 * 13 11 10 15 15 C 1.34775 * 117.00074 * 179.97438 * 14 13 11 16 16 O 1.21532 * 119.99743 * 0.02562 * 15 14 13 17 17 C 1.47220 * 120.00123 * 180.02562 * 15 14 13 18 18 C 1.40109 * 120.59873 * 5.88703 * 17 15 14 19 19 C 1.38198 * 118.38149 * 179.97438 * 18 17 15 20 20 C 1.38613 * 119.50447 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.39765 * 179.97438 * 20 19 18 22 22 N 1.31952 * 121.19816 * 0.02562 * 20 19 18 23 23 C 1.32424 * 121.76220 * 359.97438 * 22 20 19 24 24 N 1.38221 * 119.81889 * 180.27570 * 23 22 20 25 25 H 0.97001 * 119.99720 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47152 * 59.99676 * 9 7 2 27 27 H 1.09005 * 109.47209 * 299.99298 * 9 7 2 28 28 H 0.97006 * 119.99435 * 359.97438 * 10 9 7 29 29 H 1.08996 * 109.47623 * 59.99528 * 13 11 10 30 30 H 1.09005 * 109.46636 * 299.99614 * 13 11 10 31 31 H 1.08000 * 120.81393 * 0.02562 * 18 17 15 32 32 H 1.07999 * 120.25400 * 179.97438 * 19 18 17 33 33 H 0.97009 * 119.99356 * 174.07632 * 24 23 22 34 34 H 0.96993 * 120.00296 * 354.07426 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7329 -6.0288 0.0006 14 8 2.0068 -7.2863 0.0005 15 6 2.7408 -8.4166 0.0004 16 8 3.9545 -8.3530 0.0009 17 6 2.0725 -9.7283 -0.0003 18 6 0.6799 -9.8191 -0.1246 19 6 0.1003 -11.0737 -0.1203 20 6 0.9036 -12.1963 0.0061 21 17 0.1726 -13.7709 0.0118 22 7 2.2136 -12.0897 0.1230 23 6 2.8198 -10.9124 0.1248 24 7 4.1954 -10.8478 0.2440 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8904 28 1 3.1566 -3.4354 0.0002 29 1 3.3589 -5.9713 0.8910 30 1 3.3601 -5.9709 -0.8890 31 1 0.0740 -8.9304 -0.2222 32 1 -0.9705 -11.1788 -0.2138 33 1 4.6499 -9.9950 0.1595 34 1 4.7061 -11.6551 0.4122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734034149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:10 Heat of formation + Delta-G solvation = -109.440043 kcal Electronic energy + Delta-G solvation = -22133.728483 eV Core-core repulsion = 18284.879756 eV Total energy + Delta-G solvation = -3848.848727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.20992 -41.04617 -40.21972 -38.03890 -37.62374 -36.17625 -35.67463 -34.40789 -33.91435 -31.16406 -30.41215 -28.49431 -25.95776 -24.67602 -24.17152 -22.66851 -21.64106 -19.48679 -19.16664 -18.90314 -18.48470 -18.18305 -17.87290 -17.32651 -16.94875 -16.39855 -16.33661 -15.98203 -15.95539 -15.73015 -14.87522 -14.50587 -14.43757 -14.29427 -13.99570 -13.68784 -13.57822 -13.26979 -12.95084 -12.67794 -12.43118 -12.23638 -11.96925 -11.88794 -11.78658 -11.51354 -11.03162 -10.97494 -10.86368 -10.79623 -9.91197 -9.18856 -8.28579 -6.44978 -0.73752 0.20196 0.52831 1.14097 1.20870 1.45466 1.48416 1.56782 1.57461 2.33397 2.39515 2.51242 2.56183 3.06707 3.35528 3.50295 3.70916 3.71439 3.93204 4.05745 4.07655 4.22201 4.66778 4.82744 5.02514 5.11201 5.22455 5.23829 5.43025 5.63775 5.83444 5.97403 6.16757 6.44414 6.64076 6.79221 6.94487 7.21793 7.37246 8.83117 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.035114 B = 0.002149 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.211555 B =13029.177925 C =13802.207635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.582 6.582 13 C 0.061 3.939 14 O -0.336 6.336 15 C 0.532 3.468 16 O -0.526 6.526 17 C -0.273 4.273 18 C 0.047 3.953 19 C -0.225 4.225 20 C 0.257 3.743 21 Cl -0.010 7.010 22 N -0.563 5.563 23 C 0.476 3.524 24 N -0.814 5.814 25 H 0.269 0.731 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.413 0.587 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.426 0.574 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -24.312 -0.051 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.462 6.462 13 C -0.015 4.015 14 O -0.250 6.250 15 C 0.380 3.620 16 O -0.418 6.418 17 C -0.283 4.283 18 C 0.022 3.978 19 C -0.248 4.248 20 C 0.090 3.910 21 Cl 0.019 6.981 22 N -0.285 5.285 23 C 0.234 3.766 24 N -0.365 5.365 25 H 0.078 0.922 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.249 0.751 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.186 0.814 32 H 0.196 0.804 33 H 0.270 0.730 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.933 -25.067 0.029 26.008 hybrid contribution 0.289 1.545 -0.023 1.572 sum 7.222 -23.522 0.007 24.606 Atomic orbital electron populations 1.70119 1.08194 1.28654 1.49802 1.26035 0.95769 1.03821 0.93906 0.85225 0.77905 0.76727 0.79471 1.18691 1.21274 1.18714 1.21588 0.94434 0.90441 1.53062 0.89586 1.18619 0.88558 0.83742 0.94630 1.46036 1.11734 1.04737 1.72531 1.20665 0.89322 0.84676 0.76838 1.90687 1.18836 1.85269 1.51402 1.22819 0.92571 0.78570 1.07576 1.86585 1.40384 1.14234 1.83801 1.20768 0.85100 0.84427 0.71747 1.90476 1.15031 1.86952 1.49305 1.19316 0.95631 0.89239 1.24100 1.21957 0.92082 0.99233 0.84564 1.21780 1.03158 0.89631 1.10268 1.21908 0.88800 0.88687 0.91637 1.98437 1.79547 1.24366 1.95736 1.66591 1.11519 1.25384 1.25008 1.17931 0.86726 0.86138 0.85849 1.43236 1.02164 1.16309 1.74831 0.92228 0.98909 0.98921 0.75095 0.85401 0.85350 0.81391 0.80385 0.72963 0.75549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.56 -29.09 9.28 25.60 0.24 -28.86 16 8 H 0.09 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.27 13.97 5.43 85.63 0.46 14.44 16 10 N -0.70 -27.37 5.55 -466.77 -2.59 -29.96 16 11 C 0.50 18.70 7.91 87.66 0.69 19.39 16 12 O -0.58 -27.58 16.50 15.78 0.26 -27.32 16 13 C 0.06 1.57 5.95 71.24 0.42 2.00 16 14 O -0.34 -9.26 9.09 -50.47 -0.46 -9.71 16 15 C 0.53 12.86 7.88 70.18 0.55 13.41 16 16 O -0.53 -12.60 13.47 19.73 0.27 -12.34 16 17 C -0.27 -5.94 5.91 -19.89 -0.12 -6.06 16 18 C 0.05 0.88 9.73 22.71 0.22 1.10 16 19 C -0.22 -3.55 9.84 22.35 0.22 -3.33 16 20 C 0.26 4.69 7.27 84.76 0.62 5.31 16 21 Cl -0.01 -0.15 29.10 -2.72 -0.08 -0.23 16 22 N -0.56 -11.69 10.35 -183.32 -1.90 -13.59 16 23 C 0.48 9.90 7.76 133.68 1.04 10.94 16 24 N -0.81 -13.79 8.93 -54.99 -0.49 -14.28 16 25 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 28 H 0.41 12.82 8.32 -92.70 -0.77 12.04 16 29 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.13 2.62 8.14 -2.38 -0.02 2.61 16 31 H 0.17 3.01 7.71 -2.91 -0.02 2.99 16 32 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.43 7.62 5.34 -94.32 -0.50 7.12 16 34 H 0.41 5.23 8.95 -92.71 -0.83 4.40 16 Total: -1.00 -70.77 326.37 1.23 -69.54 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.90 Total: 20.06 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 4.81 Total: 29.05 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -4.69 Total: -112.18 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: 0.07 Total: -49.37 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -70.77 1.23 -69.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734034149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.899 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds