Wall clock time and date at job start Tue Mar 31 2020 04:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99907 * 2 1 4 4 N 1.34769 * 119.99873 * 179.72397 * 2 1 3 5 5 C 1.38879 * 119.99988 * 180.27554 * 4 2 1 6 6 N 1.29522 * 125.25940 * 179.72281 * 5 4 2 7 7 C 1.33637 * 115.67226 * 179.79050 * 6 5 4 8 8 C 1.47103 * 122.51259 * 180.24070 * 7 6 5 9 9 O 1.21679 * 119.99659 * 174.67491 * 8 7 6 10 10 N 1.34775 * 120.00290 * 354.67578 * 8 7 6 11 11 C 1.36945 * 119.99879 * 5.17164 * 10 8 7 12 12 H 1.08005 * 119.99926 * 312.89804 * 11 10 8 13 13 C 1.38972 * 120.00119 * 132.88911 * 11 10 8 14 14 N 1.31418 * 119.99972 * 2.75651 * 13 11 10 15 15 Si 1.86802 * 120.00282 * 182.75287 * 13 11 10 16 16 H 1.48500 * 109.47299 * 90.00131 * 15 13 11 17 17 H 1.48500 * 109.47259 * 210.00525 * 15 13 11 18 18 H 1.48504 * 109.46969 * 330.00361 * 15 13 11 19 19 C 1.46497 * 120.00115 * 185.16823 * 10 8 7 20 20 C 1.50702 * 109.47012 * 84.42719 * 19 10 8 21 21 O 1.20825 * 119.99750 * 359.97438 * 20 19 10 22 22 O 1.34225 * 120.00403 * 179.97438 * 20 19 10 23 23 C 1.35006 * 114.97089 * 0.50090 * 7 6 5 24 24 S 1.70975 * 109.18964 * 359.73720 * 23 7 6 25 25 H 1.09003 * 109.47653 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47232 * 119.99841 * 1 2 3 27 27 H 1.08997 * 109.47330 * 239.99682 * 1 2 3 28 28 H 0.97005 * 120.00549 * 0.28013 * 4 2 1 29 29 H 0.97003 * 120.00012 * 179.97438 * 14 13 11 30 30 H 1.08999 * 109.46919 * 204.42105 * 19 10 8 31 31 H 1.08998 * 109.47183 * 324.42637 * 19 10 8 32 32 H 0.96697 * 117.00405 * 179.97438 * 22 20 19 33 33 H 1.07995 * 125.40164 * 179.77223 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 0.0056 5 6 3.5696 -1.1671 0.0114 6 7 4.3173 -2.2247 0.0222 7 6 5.6350 -2.0022 0.0217 8 6 6.6211 -3.0937 0.0278 9 8 7.8076 -2.8422 -0.0707 10 7 6.2106 -4.3723 0.1426 11 6 4.8726 -4.6640 0.1469 12 1 4.1978 -4.0948 0.7691 13 6 4.3830 -5.6923 -0.6495 14 7 5.2108 -6.4199 -1.3654 15 14 2.5485 -6.0403 -0.7025 16 1 1.9236 -5.2388 -1.7853 17 1 2.3260 -7.4849 -0.9646 18 1 1.9373 -5.6737 0.6003 19 6 7.1956 -5.4499 0.2627 20 6 7.6108 -5.5926 1.7044 21 8 7.1332 -4.8681 2.5451 22 8 8.5111 -6.5245 2.0546 23 6 5.9932 -0.7005 0.0206 24 16 4.5854 0.2697 0.0129 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3634 -0.5139 0.8899 28 1 1.6959 -2.0073 0.0056 29 1 4.8691 -7.1379 -1.9210 30 1 6.7549 -6.3851 -0.0826 31 1 8.0689 -5.2134 -0.3451 32 1 8.7462 -6.5779 2.9910 33 1 7.0079 -0.3309 0.0235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736169700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:01 Heat of formation + Delta-G solvation = -115.748827 kcal Electronic energy + Delta-G solvation = -23913.572203 eV Core-core repulsion = 20066.493613 eV Total energy + Delta-G solvation = -3847.078590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68885 -41.26408 -40.65934 -39.19702 -37.16591 -36.65290 -35.92818 -33.48011 -31.73217 -30.18672 -29.91276 -26.93324 -25.88900 -23.65932 -22.48492 -22.17823 -20.91786 -19.68893 -19.12403 -18.63797 -18.27760 -17.77884 -17.45157 -16.96733 -16.89514 -16.53202 -16.27332 -16.08905 -15.78631 -15.21945 -14.85079 -14.71467 -14.18792 -13.96568 -13.41267 -13.31126 -13.23352 -13.11077 -13.06325 -12.76474 -12.59936 -12.42863 -12.05918 -12.02955 -11.64115 -11.24939 -11.15172 -10.90768 -10.35746 -10.26481 -9.55097 -9.19916 -8.25336 -6.09153 -0.38557 0.09442 0.77005 0.88137 1.28371 1.46938 1.50250 1.60811 1.61696 1.67282 2.04978 2.38289 2.65127 2.89458 3.21449 3.60809 3.81503 4.24829 4.39499 4.42715 4.54039 4.54745 4.67989 4.73721 4.96424 5.05543 5.16642 5.60449 5.68502 5.86039 5.91801 6.52765 6.71195 6.78760 7.06188 7.13011 7.38497 7.82046 8.79027 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.005679 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.051763 B = 4929.180227 C = 6333.578161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.508 3.492 3 O -0.549 6.549 4 N -0.615 5.615 5 C 0.227 3.773 6 N -0.448 5.448 7 C 0.037 3.963 8 C 0.534 3.466 9 O -0.621 6.621 10 N -0.420 5.420 11 C -0.311 4.311 12 H 0.110 0.890 13 C -0.007 4.007 14 N -0.912 5.912 15 Si 0.991 3.009 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.255 1.255 19 C 0.113 3.887 20 C 0.470 3.530 21 O -0.550 6.550 22 O -0.508 6.508 23 C -0.281 4.281 24 S 0.279 5.721 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.435 0.565 29 H 0.274 0.726 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.421 0.579 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 6.885 2.072 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.298 3.702 3 O -0.427 6.427 4 N -0.267 5.267 5 C -0.143 4.143 6 N -0.170 5.170 7 C -0.097 4.097 8 C 0.323 3.677 9 O -0.509 6.509 10 N -0.136 5.136 11 C -0.439 4.439 12 H 0.127 0.873 13 C -0.207 4.207 14 N -0.552 5.552 15 Si 0.814 3.186 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.179 1.179 19 C -0.012 4.012 20 C 0.313 3.687 21 O -0.440 6.440 22 O -0.320 6.320 23 C -0.425 4.425 24 S 0.530 5.470 25 H 0.128 0.872 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.276 0.724 29 H 0.084 0.916 30 H 0.171 0.829 31 H 0.111 0.889 32 H 0.282 0.718 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.915 8.320 1.730 13.833 hybrid contribution 0.530 -1.785 0.514 1.931 sum -10.385 6.535 2.244 12.474 Atomic orbital electron populations 1.21984 0.84282 1.07711 1.07444 1.22373 0.93436 0.80975 0.73413 1.90645 1.70688 1.31765 1.49572 1.43071 1.00181 1.12665 1.70785 1.25158 0.91653 0.93282 1.04163 1.67815 1.03090 1.27440 1.18672 1.19695 0.89226 0.93180 1.07632 1.17995 0.86634 0.83621 0.79424 1.90597 1.17936 1.84638 1.57711 1.43117 1.06930 1.02894 1.60704 1.20127 0.81396 1.17856 1.24521 0.87302 1.26463 1.04501 0.95940 0.93765 1.69655 1.36565 1.20724 1.28231 0.84958 0.77124 0.77107 0.79459 1.19009 1.21052 1.17910 1.21210 0.94449 0.97749 0.87808 1.24679 0.74697 0.75871 0.93422 1.90609 1.54781 1.44982 1.53674 1.84519 1.56778 1.54543 1.36205 1.26970 1.08391 0.97457 1.09647 1.84190 0.90161 1.05364 1.67242 0.87170 0.86161 0.86086 0.72352 0.91605 0.82936 0.88906 0.71812 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.32 71.24 0.74 -0.56 16 2 C 0.51 10.43 7.90 87.66 0.69 11.12 16 3 O -0.55 -15.14 14.59 -3.03 -0.04 -15.18 16 4 N -0.61 -15.28 5.40 -310.01 -1.67 -16.96 16 5 C 0.23 7.91 8.36 179.28 1.50 9.41 16 6 N -0.45 -19.45 7.03 -187.19 -1.32 -20.76 16 7 C 0.04 1.76 6.51 40.45 0.26 2.02 16 8 C 0.53 29.16 7.40 86.57 0.64 29.81 16 9 O -0.62 -35.48 16.31 -4.28 -0.07 -35.55 16 10 N -0.42 -22.73 2.05 -643.66 -1.32 -24.05 16 11 C -0.31 -16.34 7.63 84.07 0.64 -15.70 16 12 H 0.11 5.73 5.96 -2.91 -0.02 5.71 16 13 C -0.01 -0.34 5.34 84.93 0.45 0.11 16 14 N -0.91 -47.35 10.94 21.67 0.24 -47.11 16 15 Si 0.99 38.42 29.55 68.60 2.03 40.45 16 16 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 19 C 0.11 5.66 5.48 85.63 0.47 6.13 16 20 C 0.47 21.65 8.36 71.24 0.60 22.25 16 21 O -0.55 -28.49 17.06 21.97 0.37 -28.11 16 22 O -0.51 -17.77 13.42 -51.37 -0.69 -18.46 16 23 C -0.28 -11.21 10.55 67.08 0.71 -10.51 16 24 S 0.28 9.06 20.29 -56.49 -1.15 7.92 16 25 H 0.11 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.44 8.78 8.82 -92.70 -0.82 7.96 16 29 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.15 7.82 5.46 -2.39 -0.01 7.80 16 31 H 0.09 4.64 7.52 -2.39 -0.02 4.62 16 32 H 0.42 10.06 9.10 -74.06 -0.67 9.39 16 33 H 0.19 6.96 8.00 -2.91 -0.02 6.94 16 Total: -1.00 -77.58 313.39 2.80 -74.78 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.27 Total: 28.96 kcal Atomic # 6 Polarization: 47.39 SS G_CDS: 6.70 Total: 54.09 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.08 Total: -108.88 kcal Atomic # 8 Polarization: -96.88 SS G_CDS: -0.43 Total: -97.31 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 9.06 SS G_CDS: -1.15 Total: 7.92 kcal Total: -77.58 2.80 -74.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736169700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.969 kcal (2) G-P(sol) polarization free energy of solvation -77.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds