Wall clock time and date at job start Tue Mar 31 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39031 * 119.99998 * 2 1 4 4 C 1.39041 * 119.62981 * 359.97438 * 3 2 1 5 5 C 1.39629 * 118.94811 * 179.72422 * 4 3 2 6 6 C 1.48018 * 120.88074 * 180.30064 * 5 4 3 7 7 O 1.21565 * 119.99618 * 341.36681 * 6 5 4 8 8 N 1.34777 * 120.00177 * 161.37397 * 6 5 4 9 9 C 1.36796 * 119.99880 * 188.68688 * 8 6 5 10 10 H 1.07998 * 120.00389 * 30.90152 * 9 8 6 11 11 C 1.39104 * 119.99557 * 210.89854 * 9 8 6 12 12 N 1.31325 * 120.00001 * 24.36039 * 11 9 8 13 13 Si 1.86797 * 119.99890 * 204.35560 * 11 9 8 14 14 H 1.48503 * 109.47094 * 90.00130 * 13 11 9 15 15 H 1.48498 * 109.47565 * 210.00197 * 13 11 9 16 16 H 1.48506 * 109.47240 * 330.00906 * 13 11 9 17 17 C 1.46504 * 119.99811 * 8.67975 * 8 6 5 18 18 C 1.50694 * 109.47277 * 301.34908 * 17 8 6 19 19 O 1.20828 * 120.00511 * 0.02562 * 18 17 8 20 20 O 1.34236 * 119.99962 * 179.97438 * 18 17 8 21 21 C 1.40056 * 118.23859 * 0.28047 * 5 4 3 22 22 C 1.38083 * 119.14899 * 359.97438 * 21 5 4 23 23 Cl 1.73608 * 119.51033 * 179.97438 * 22 21 5 24 24 N 1.32021 * 120.97761 * 359.97438 * 22 21 5 25 25 H 1.09001 * 109.47104 * 300.00836 * 1 2 3 26 26 H 1.09001 * 109.46566 * 60.00082 * 1 2 3 27 27 H 1.08991 * 109.47237 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00203 * 179.97438 * 2 1 3 29 29 H 1.07999 * 120.52783 * 0.02562 * 4 3 2 30 30 H 0.97001 * 119.99728 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.46943 * 61.34961 * 17 8 6 32 32 H 1.08997 * 109.47081 * 181.34778 * 17 8 6 33 33 H 0.96696 * 117.00090 * 180.02562 * 20 18 17 34 34 H 1.07999 * 120.42316 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 6 1.4572 2.4037 -0.0005 5 6 2.1697 3.6045 0.0053 6 6 1.4648 4.9060 0.0117 7 8 0.2981 4.9670 -0.3244 8 7 2.1164 6.0235 0.3900 9 6 1.4259 7.1910 0.5674 10 1 0.3983 7.1657 0.8984 11 6 2.0476 8.4109 0.3214 12 7 3.0688 8.4732 -0.5019 13 14 1.4297 9.9603 1.1622 14 1 2.1412 10.1402 2.4532 15 1 1.6855 11.1334 0.2883 16 1 -0.0289 9.8390 1.4137 17 6 3.5642 5.9878 0.6113 18 6 3.8846 4.9712 1.6766 19 8 2.9950 4.3408 2.1973 20 8 5.1585 4.7653 2.0464 21 6 3.5690 3.5448 0.0055 22 6 4.1895 2.3113 0.0005 23 17 5.9235 2.2264 0.0000 24 7 3.4838 1.1956 -0.0040 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 0.3772 2.4066 -0.0005 30 1 3.5021 9.3240 -0.6736 31 1 4.0668 5.7130 -0.3161 32 1 3.9070 6.9712 0.9327 33 1 5.3146 4.1029 2.7333 34 1 4.1550 4.4519 0.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737556990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:42 Heat of formation + Delta-G solvation = -19.323570 kcal Electronic energy + Delta-G solvation = -24734.228718 eV Core-core repulsion = 20889.287735 eV Total energy + Delta-G solvation = -3844.940983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24899 -39.41810 -38.18718 -36.61272 -35.71920 -35.32356 -34.92374 -32.66112 -31.60453 -29.83507 -28.22558 -26.16804 -25.76007 -23.46368 -22.21801 -21.58290 -19.89734 -17.72695 -17.37333 -17.30018 -17.22069 -16.76191 -16.03673 -15.12418 -14.91710 -14.83193 -14.73321 -14.28506 -14.24191 -13.93158 -13.55998 -13.27243 -12.70985 -12.43471 -12.38076 -12.16401 -11.79377 -11.60935 -11.30040 -11.23189 -11.08035 -10.81707 -10.76585 -10.47390 -10.02195 -9.71096 -9.53609 -9.22136 -9.08620 -8.70899 -7.99721 -7.55494 -6.68948 -4.17677 1.24907 1.38891 1.97367 2.81954 3.04809 3.14252 3.18306 3.26369 3.33953 3.67450 3.95530 4.30449 4.43996 4.90331 4.95375 5.10561 5.20702 5.31620 5.43795 5.43803 5.58376 5.66901 5.70345 5.91647 6.00782 6.28306 6.41815 6.54483 6.93630 7.03264 7.32246 7.53873 7.85483 8.15554 8.15803 8.36656 8.86529 9.01143 9.63195 10.38465 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.005670 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.024613 B = 4936.820651 C = 6147.699551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.730 5.730 3 C 0.416 3.584 4 C -0.190 4.190 5 C 0.026 3.974 6 C 0.499 3.501 7 O -0.561 6.561 8 N -0.408 5.408 9 C -0.313 4.313 10 H 0.105 0.895 11 C 0.039 3.961 12 N -0.856 5.856 13 Si 0.925 3.075 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.265 1.265 17 C 0.115 3.885 18 C 0.463 3.537 19 O -0.511 6.511 20 O -0.519 6.519 21 C -0.256 4.256 22 C 0.221 3.779 23 Cl -0.039 7.039 24 N -0.546 5.546 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.404 0.596 29 H 0.144 0.856 30 H 0.277 0.723 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.400 0.600 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -10.259 2.133 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.364 5.364 3 C 0.180 3.820 4 C -0.216 4.216 5 C 0.015 3.985 6 C 0.289 3.711 7 O -0.444 6.444 8 N -0.126 5.126 9 C -0.440 4.440 10 H 0.122 0.878 11 C -0.168 4.168 12 N -0.492 5.492 13 Si 0.750 3.250 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.010 4.010 18 C 0.306 3.694 19 O -0.399 6.399 20 O -0.330 6.330 21 C -0.279 4.279 22 C 0.058 3.942 23 Cl -0.011 7.011 24 N -0.268 5.268 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.239 0.761 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.152 0.848 33 H 0.258 0.742 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.655 -10.668 1.713 11.406 hybrid contribution 0.036 0.594 0.843 1.032 sum 3.690 -10.074 2.556 11.029 Atomic orbital electron populations 1.21621 0.78675 1.02558 1.02040 1.44129 1.05731 1.04786 1.81788 1.17841 0.86497 0.86500 0.91145 1.21422 1.01562 0.90014 1.08556 1.20295 0.92084 0.95238 0.90920 1.17780 0.87540 0.83144 0.82613 1.90628 1.16688 1.85703 1.51366 1.43017 1.04521 1.08744 1.56290 1.19629 0.99126 0.81068 1.44195 0.87755 1.25487 0.96822 0.99749 0.94707 1.69969 1.22877 1.28103 1.28257 0.85944 0.79974 0.79905 0.79173 1.19912 1.20599 1.18915 1.21602 0.86064 0.99302 0.94078 1.24159 0.80240 0.82494 0.82517 1.90750 1.47529 1.46798 1.54839 1.84581 1.30434 1.60488 1.57509 1.23371 0.95643 0.99284 1.09581 1.20859 0.86244 0.88849 0.98283 1.98377 1.07499 1.98639 1.96563 1.66004 1.06526 1.31483 1.22762 0.92366 0.92277 0.90429 0.76126 0.83805 0.91297 0.87437 0.84814 0.74248 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 9.92 59.85 0.59 1.56 16 2 N -0.73 -9.44 5.89 -67.23 -0.40 -9.83 16 3 C 0.42 7.13 7.65 -155.06 -1.19 5.95 16 4 C -0.19 -3.67 8.89 -38.76 -0.34 -4.02 16 5 C 0.03 0.57 4.20 -104.69 -0.44 0.12 16 6 C 0.50 12.59 6.89 -12.25 -0.08 12.50 16 7 O -0.56 -15.63 16.45 5.31 0.09 -15.55 16 8 N -0.41 -10.11 2.56 -122.71 -0.31 -10.43 16 9 C -0.31 -8.23 8.97 -15.02 -0.13 -8.36 16 10 H 0.10 2.87 7.75 -52.49 -0.41 2.47 16 11 C 0.04 0.96 4.66 -17.45 -0.08 0.88 16 12 N -0.86 -20.90 11.76 55.50 0.65 -20.25 16 13 Si 0.92 19.04 29.62 -169.99 -5.03 14.01 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 17 C 0.12 2.41 4.73 -5.19 -0.02 2.39 16 18 C 0.46 8.75 4.65 36.00 0.17 8.92 16 19 O -0.51 -11.07 13.88 -18.75 -0.26 -11.33 16 20 O -0.52 -7.65 13.23 -39.27 -0.52 -8.17 16 21 C -0.26 -4.91 5.57 -38.96 -0.22 -5.13 16 22 C 0.22 3.92 7.26 -17.53 -0.13 3.79 16 23 Cl -0.04 -0.58 29.10 -51.86 -1.51 -2.09 16 24 N -0.55 -9.71 10.34 -9.61 -0.10 -9.80 16 25 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 26 H 0.06 0.62 7.92 -51.93 -0.41 0.20 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.40 4.47 8.95 -40.82 -0.37 4.10 16 29 H 0.14 2.69 6.49 -52.49 -0.34 2.35 16 30 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 31 H 0.11 2.12 6.14 -51.93 -0.32 1.80 16 32 H 0.13 2.85 6.15 -51.93 -0.32 2.54 16 33 H 0.40 4.46 9.10 45.56 0.41 4.88 16 34 H 0.18 3.35 2.39 -64.58 -0.15 3.20 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -31.42 306.82 -6.52 -37.94 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -1.87 Total: 12.27 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: -1.88 Total: 18.61 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.16 Total: -50.31 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.69 Total: -35.05 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.09 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.42 -6.52 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737556990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.619 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds