Wall clock time and date at job start Tue Mar 31 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39031 * 119.99998 * 2 1 4 4 C 1.39041 * 119.62981 * 359.97438 * 3 2 1 5 5 C 1.39629 * 118.94811 * 179.72422 * 4 3 2 6 6 C 1.48018 * 120.88074 * 180.30064 * 5 4 3 7 7 O 1.21565 * 119.99618 * 341.36681 * 6 5 4 8 8 N 1.34777 * 120.00177 * 161.37397 * 6 5 4 9 9 C 1.36796 * 119.99880 * 188.68688 * 8 6 5 10 10 H 1.07998 * 120.00389 * 30.90152 * 9 8 6 11 11 C 1.39104 * 119.99557 * 210.89854 * 9 8 6 12 12 N 1.31325 * 120.00001 * 24.36039 * 11 9 8 13 13 Si 1.86797 * 119.99890 * 204.35560 * 11 9 8 14 14 H 1.48503 * 109.47094 * 90.00130 * 13 11 9 15 15 H 1.48498 * 109.47565 * 210.00197 * 13 11 9 16 16 H 1.48506 * 109.47240 * 330.00906 * 13 11 9 17 17 C 1.46504 * 119.99811 * 8.67975 * 8 6 5 18 18 C 1.50694 * 109.47277 * 301.34908 * 17 8 6 19 19 O 1.20828 * 120.00511 * 0.02562 * 18 17 8 20 20 O 1.34236 * 119.99962 * 179.97438 * 18 17 8 21 21 C 1.40056 * 118.23859 * 0.28047 * 5 4 3 22 22 C 1.38083 * 119.14899 * 359.97438 * 21 5 4 23 23 Cl 1.73608 * 119.51033 * 179.97438 * 22 21 5 24 24 N 1.32021 * 120.97761 * 359.97438 * 22 21 5 25 25 H 1.09001 * 109.47104 * 300.00836 * 1 2 3 26 26 H 1.09001 * 109.46566 * 60.00082 * 1 2 3 27 27 H 1.08991 * 109.47237 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00203 * 179.97438 * 2 1 3 29 29 H 1.07999 * 120.52783 * 0.02562 * 4 3 2 30 30 H 0.97001 * 119.99728 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.46943 * 61.34961 * 17 8 6 32 32 H 1.08997 * 109.47081 * 181.34778 * 17 8 6 33 33 H 0.96696 * 117.00090 * 180.02562 * 20 18 17 34 34 H 1.07999 * 120.42316 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 6 1.4572 2.4037 -0.0005 5 6 2.1697 3.6045 0.0053 6 6 1.4648 4.9060 0.0117 7 8 0.2981 4.9670 -0.3244 8 7 2.1164 6.0235 0.3900 9 6 1.4259 7.1910 0.5674 10 1 0.3983 7.1657 0.8984 11 6 2.0476 8.4109 0.3214 12 7 3.0688 8.4732 -0.5019 13 14 1.4297 9.9603 1.1622 14 1 2.1412 10.1402 2.4532 15 1 1.6855 11.1334 0.2883 16 1 -0.0289 9.8390 1.4137 17 6 3.5642 5.9878 0.6113 18 6 3.8846 4.9712 1.6766 19 8 2.9950 4.3408 2.1973 20 8 5.1585 4.7653 2.0464 21 6 3.5690 3.5448 0.0055 22 6 4.1895 2.3113 0.0005 23 17 5.9235 2.2264 0.0000 24 7 3.4838 1.1956 -0.0040 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 0.3772 2.4066 -0.0005 30 1 3.5021 9.3240 -0.6736 31 1 4.0668 5.7130 -0.3161 32 1 3.9070 6.9712 0.9327 33 1 5.3146 4.1029 2.7333 34 1 4.1550 4.4519 0.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737556990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:42 Heat of formation + Delta-G solvation = -42.444624 kcal Electronic energy + Delta-G solvation = -24735.231322 eV Core-core repulsion = 20889.287735 eV Total energy + Delta-G solvation = -3845.943588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.80514 -40.82982 -39.93629 -37.89352 -37.24994 -36.72333 -36.52559 -34.35322 -33.28367 -31.27507 -29.80673 -27.64681 -27.20295 -25.10252 -23.56696 -23.13102 -21.51926 -19.36532 -19.00236 -18.82774 -18.63085 -18.28462 -17.62075 -16.80179 -16.45136 -16.29826 -16.15533 -15.81434 -15.52365 -15.38811 -15.17773 -14.53207 -14.45355 -14.00370 -13.91444 -13.56946 -13.05712 -12.98475 -12.88753 -12.72734 -12.58806 -12.35315 -12.30446 -12.10629 -11.62159 -11.20068 -11.00605 -10.96854 -10.60276 -10.49378 -9.87733 -8.81549 -8.56283 -6.15516 -0.29538 -0.03840 0.62724 1.30908 1.39975 1.44943 1.56153 1.74703 2.04375 2.14417 2.27760 2.67429 2.71716 3.06045 3.41835 3.75564 3.84435 3.94821 4.09619 4.16973 4.38031 4.40615 4.51793 4.59747 4.62888 4.87813 4.97666 5.09654 5.37201 5.61376 5.81166 5.95697 6.25932 6.37947 6.89890 6.91531 7.00279 7.13994 7.73903 8.51407 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.005670 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.024613 B = 4936.820651 C = 6147.699551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.713 5.713 3 C 0.421 3.579 4 C -0.202 4.202 5 C 0.008 3.992 6 C 0.483 3.517 7 O -0.608 6.608 8 N -0.416 5.416 9 C -0.356 4.356 10 H 0.076 0.924 11 C 0.016 3.984 12 N -0.869 5.869 13 Si 0.988 3.012 14 H -0.260 1.260 15 H -0.269 1.269 16 H -0.275 1.275 17 C 0.116 3.884 18 C 0.480 3.520 19 O -0.539 6.539 20 O -0.499 6.499 21 C -0.263 4.263 22 C 0.224 3.776 23 Cl -0.007 7.007 24 N -0.547 5.547 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.119 0.881 28 H 0.417 0.583 29 H 0.141 0.859 30 H 0.287 0.713 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.422 0.578 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -11.289 2.645 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.347 5.347 3 C 0.183 3.817 4 C -0.229 4.229 5 C -0.004 4.004 6 C 0.274 3.726 7 O -0.495 6.495 8 N -0.133 5.133 9 C -0.482 4.482 10 H 0.094 0.906 11 C -0.190 4.190 12 N -0.504 5.504 13 Si 0.810 3.190 14 H -0.184 1.184 15 H -0.193 1.193 16 H -0.199 1.199 17 C -0.009 4.009 18 C 0.324 3.676 19 O -0.430 6.430 20 O -0.312 6.312 21 C -0.286 4.286 22 C 0.060 3.940 23 Cl 0.021 6.979 24 N -0.269 5.269 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.254 0.746 29 H 0.159 0.841 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.283 0.717 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.411 -11.743 2.236 13.121 hybrid contribution -0.409 0.804 0.649 1.111 sum 5.002 -10.939 2.885 12.369 Atomic orbital electron populations 1.21877 0.76869 1.05182 1.01548 1.44300 1.06843 1.03836 1.79676 1.17989 0.86516 0.87236 0.89929 1.21475 1.01605 0.90452 1.09350 1.20054 0.93262 0.93954 0.93094 1.18428 0.87434 0.84658 0.82039 1.90559 1.18665 1.86730 1.53551 1.43157 1.05957 1.08368 1.55799 1.19557 0.99046 0.82724 1.46916 0.90609 1.26189 0.96765 1.01672 0.94402 1.69985 1.23063 1.29407 1.27925 0.85027 0.78881 0.76365 0.78725 1.18439 1.19342 1.19942 1.21599 0.83979 0.99866 0.95466 1.23462 0.81000 0.81567 0.81621 1.90755 1.48720 1.47758 1.55768 1.84501 1.27610 1.61030 1.58039 1.23215 0.94587 1.00060 1.10731 1.21024 0.87748 0.88367 0.96811 1.98384 1.04609 1.98573 1.96304 1.66224 1.06532 1.31133 1.22991 0.92990 0.92670 0.86243 0.74619 0.84147 0.90314 0.86405 0.85381 0.71744 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 9.92 127.77 1.27 2.89 16 2 N -0.71 -16.90 5.89 -366.63 -2.16 -19.06 16 3 C 0.42 13.96 7.65 133.04 1.02 14.98 16 4 C -0.20 -7.97 8.89 22.80 0.20 -7.77 16 5 C 0.01 0.33 4.20 -19.91 -0.08 0.25 16 6 C 0.48 25.62 6.89 86.84 0.60 26.22 16 7 O -0.61 -36.19 16.45 -3.92 -0.06 -36.25 16 8 N -0.42 -21.49 2.56 -660.41 -1.69 -23.19 16 9 C -0.36 -19.54 8.97 84.13 0.75 -18.78 16 10 H 0.08 4.49 7.75 -2.91 -0.02 4.46 16 11 C 0.02 0.80 4.66 84.98 0.40 1.19 16 12 N -0.87 -42.37 11.76 21.69 0.26 -42.11 16 13 Si 0.99 39.08 29.62 68.60 2.03 41.12 16 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 15 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 C 0.12 4.90 4.73 85.63 0.40 5.30 16 18 C 0.48 17.89 4.65 71.23 0.33 18.22 16 19 O -0.54 -23.48 13.88 21.96 0.30 -23.17 16 20 O -0.50 -13.62 13.23 -51.47 -0.68 -14.30 16 21 C -0.26 -10.00 5.57 22.67 0.13 -9.87 16 22 C 0.22 7.60 7.26 84.63 0.61 8.22 16 23 Cl -0.01 -0.20 29.10 -2.72 -0.08 -0.28 16 24 N -0.55 -18.42 10.34 -184.30 -1.91 -20.32 16 25 H 0.05 1.05 7.93 -2.39 -0.02 1.03 16 26 H 0.05 1.09 7.92 -2.39 -0.02 1.07 16 27 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.42 7.96 8.95 -92.71 -0.83 7.13 16 29 H 0.14 5.48 6.49 -2.91 -0.02 5.46 16 30 H 0.29 12.76 8.31 -92.71 -0.77 11.99 16 31 H 0.12 4.67 6.14 -2.39 -0.01 4.66 16 32 H 0.13 5.50 6.15 -2.39 -0.01 5.49 16 33 H 0.42 8.15 9.10 -74.06 -0.67 7.48 16 34 H 0.18 6.68 2.39 -14.27 -0.03 6.64 16 Total: -1.00 -70.31 306.82 1.32 -68.99 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.32 Total: 27.72 kcal Atomic # 6 Polarization: 35.22 SS G_CDS: 5.63 Total: 40.85 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -5.50 Total: -104.68 kcal Atomic # 8 Polarization: -73.28 SS G_CDS: -0.44 Total: -73.72 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -70.31 1.32 -68.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737556990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.544 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds