Wall clock time and date at job start Tue Mar 31 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00168 * 2 1 4 4 O 1.20835 * 119.99804 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00568 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47747 * 180.02562 * 5 3 2 7 7 C 1.36682 * 120.00002 * 270.00592 * 6 5 3 8 8 H 1.08002 * 120.00703 * 130.19292 * 7 6 5 9 9 C 1.39165 * 119.99734 * 310.19341 * 7 6 5 10 10 N 1.31297 * 120.00116 * 353.55066 * 9 7 6 11 11 Si 1.86799 * 119.99930 * 173.55046 * 9 7 6 12 12 H 1.48495 * 109.47278 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46972 * 120.00125 * 11 9 7 14 14 H 1.48501 * 109.47193 * 240.00011 * 11 9 7 15 15 C 1.34771 * 120.00451 * 89.99540 * 6 5 3 16 16 O 1.21688 * 119.99480 * 3.85466 * 15 6 5 17 17 C 1.46981 * 120.00431 * 183.84918 * 15 6 5 18 18 C 1.36800 * 125.16607 * 173.56063 * 17 15 6 19 19 C 1.36682 * 114.74239 * 179.97438 * 18 17 15 20 20 C 1.36767 * 114.74159 * 359.97438 * 19 18 17 21 21 C 1.46914 * 125.15807 * 179.97438 * 20 19 18 22 22 O 1.21570 * 119.99750 * 359.97438 * 21 20 19 23 23 O 1.34838 * 120.00179 * 180.02562 * 21 20 19 24 24 S 1.75829 * 125.16465 * 353.55666 * 17 15 6 25 25 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47418 * 299.99845 * 1 2 3 27 27 H 1.09007 * 109.47062 * 60.00148 * 1 2 3 28 28 H 1.09002 * 109.46814 * 60.00177 * 5 3 2 29 29 H 1.09004 * 109.47072 * 300.00527 * 5 3 2 30 30 H 0.96993 * 120.00193 * 185.00602 * 10 9 7 31 31 H 1.08000 * 122.62850 * 0.26796 * 18 17 15 32 32 H 1.07997 * 122.62978 * 180.02562 * 19 18 17 33 33 H 0.96704 * 117.00433 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1758 3.3354 -1.1824 8 1 3.7156 4.2983 -1.3482 9 6 4.9666 2.7623 -2.1738 10 7 5.6279 1.6550 -1.9277 11 14 5.0871 3.5682 -3.8547 12 1 4.2530 4.7966 -3.8756 13 1 6.5014 3.9260 -4.1318 14 1 4.6030 2.6230 -4.8927 15 6 4.1723 3.3258 1.1684 16 8 4.0678 2.7240 2.2209 17 6 4.5064 4.7571 1.1703 18 6 4.5991 5.5431 2.2861 19 6 4.9243 6.8479 2.0414 20 6 5.1047 7.1548 0.7209 21 6 5.4575 8.4831 0.2017 22 8 5.6112 9.4142 0.9681 23 8 5.6098 8.6698 -1.1250 24 16 4.8479 5.7192 -0.2613 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9563 0.7807 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 6.2353 1.2949 -2.5927 31 1 4.4331 5.1614 3.2827 32 1 5.0314 7.5789 2.8291 33 1 5.8417 9.5613 -1.4192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737606338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:56 Heat of formation + Delta-G solvation = -168.735746 kcal Electronic energy + Delta-G solvation = -23659.579334 eV Core-core repulsion = 19777.910308 eV Total energy + Delta-G solvation = -3881.669026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.96813 -39.78946 -38.73082 -36.78594 -35.89441 -35.65864 -34.99394 -32.08114 -30.11936 -28.63195 -26.75755 -25.80787 -24.59476 -22.12487 -21.14579 -20.01162 -18.91826 -18.46680 -17.69239 -17.12436 -16.76202 -16.08223 -15.77854 -15.66863 -15.40491 -15.18938 -14.72941 -14.46346 -13.97478 -13.68575 -13.00843 -12.91742 -12.89117 -12.54728 -12.03977 -11.95491 -11.90605 -11.60869 -11.52389 -11.39242 -11.37008 -11.06408 -10.64782 -10.52838 -10.35249 -10.15728 -9.85427 -9.38567 -9.06528 -8.32109 -8.02491 -7.80854 -6.89482 -4.75811 0.62919 2.13058 2.41311 2.59809 2.90234 2.91992 2.99169 3.04260 3.13413 3.27366 3.33104 3.73806 4.09786 4.33840 4.58178 5.36690 5.43406 5.49542 5.53630 5.65589 5.77839 5.80498 5.87477 6.14346 6.42781 6.51009 6.56387 6.69930 6.79362 6.88218 6.92740 7.42435 7.78157 8.07341 8.41501 8.51297 8.91463 9.37756 10.12001 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.005505 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.071558 B = 5085.124106 C = 6296.926526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.445 3.555 4 O -0.504 6.504 5 C 0.127 3.873 6 N -0.418 5.418 7 C -0.345 4.345 8 H 0.102 0.898 9 C 0.066 3.934 10 N -0.839 5.839 11 Si 0.910 3.090 12 H -0.254 1.254 13 H -0.267 1.267 14 H -0.270 1.270 15 C 0.553 3.447 16 O -0.579 6.579 17 C -0.181 4.181 18 C -0.121 4.121 19 C -0.057 4.057 20 C -0.337 4.337 21 C 0.562 3.438 22 O -0.525 6.525 23 O -0.512 6.512 24 S 0.337 5.663 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.144 0.856 29 H 0.107 0.893 30 H 0.284 0.716 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 2.024 -2.173 3.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.287 3.713 4 O -0.390 6.390 5 C 0.002 3.998 6 N -0.136 5.136 7 C -0.479 4.479 8 H 0.118 0.882 9 C -0.147 4.147 10 N -0.471 5.471 11 Si 0.733 3.267 12 H -0.177 1.177 13 H -0.192 1.192 14 H -0.195 1.195 15 C 0.342 3.658 16 O -0.464 6.464 17 C -0.304 4.304 18 C -0.153 4.153 19 C -0.091 4.091 20 C -0.455 4.455 21 C 0.407 3.593 22 O -0.417 6.417 23 O -0.324 6.324 24 S 0.613 5.387 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.111 1.454 -3.019 3.960 hybrid contribution -0.079 1.278 0.515 1.380 sum -2.190 2.732 -2.504 4.305 Atomic orbital electron populations 1.23113 0.77854 1.02748 1.02076 1.86539 1.22379 1.34603 1.84855 1.25207 0.93481 0.80976 0.71663 1.90598 1.67024 1.36391 1.44974 1.21051 0.84385 0.87051 1.07334 1.42711 1.57038 1.09005 1.04850 1.19396 1.31817 1.03966 0.92767 0.88180 1.25708 0.93150 0.95358 1.00481 1.69633 1.22508 1.18590 1.36369 0.86067 0.79605 0.80358 0.80652 1.17687 1.19213 1.19541 1.17376 0.79391 0.84814 0.84184 1.90687 1.56715 1.67374 1.31613 1.25071 1.08781 0.98670 0.97908 1.20267 1.03557 0.92116 0.99371 1.20222 0.98183 0.96191 0.94542 1.25004 1.19414 0.99778 1.01316 1.19684 0.72417 0.87540 0.79612 1.90856 1.48964 1.43395 1.58444 1.84643 1.82816 1.39525 1.25375 1.85666 1.57171 0.92056 1.03767 0.88796 0.92447 0.92390 0.83907 0.87489 0.90483 0.83466 0.84398 0.73195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.62 10.56 -39.25 -0.41 -7.03 16 3 C 0.45 9.47 8.02 36.00 0.29 9.76 16 4 O -0.50 -11.94 16.18 -18.76 -0.30 -12.24 16 5 C 0.13 2.78 5.59 -5.20 -0.03 2.75 16 6 N -0.42 -9.89 1.92 -117.49 -0.23 -10.12 16 7 C -0.35 -7.94 6.83 -15.05 -0.10 -8.04 16 8 H 0.10 2.28 5.30 -31.15 -0.17 2.12 16 9 C 0.07 1.45 5.21 -17.44 -0.09 1.36 16 10 N -0.84 -19.00 11.49 55.51 0.64 -18.36 16 11 Si 0.91 17.15 29.56 -169.99 -5.03 12.13 16 12 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 13 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 14 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 15 C 0.55 13.34 7.61 -12.72 -0.10 13.24 16 16 O -0.58 -14.87 16.39 5.20 0.09 -14.78 16 17 C -0.18 -3.88 6.31 -36.56 -0.23 -4.11 16 18 C -0.12 -2.30 9.89 -40.66 -0.40 -2.70 16 19 C -0.06 -1.00 9.88 -40.68 -0.40 -1.41 16 20 C -0.34 -6.09 6.46 -36.60 -0.24 -6.33 16 21 C 0.56 9.42 8.32 34.24 0.28 9.70 16 22 O -0.53 -9.66 17.60 -19.32 -0.34 -10.00 16 23 O -0.51 -6.89 13.28 -40.87 -0.54 -7.43 16 24 S 0.34 6.50 18.35 -107.50 -1.97 4.52 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.14 3.12 5.91 -51.93 -0.31 2.81 16 29 H 0.11 2.29 7.37 -51.93 -0.38 1.90 16 30 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 31 H 0.15 2.63 8.04 -52.49 -0.42 2.20 16 32 H 0.14 2.15 8.04 -52.49 -0.42 1.73 16 33 H 0.41 3.25 9.11 45.56 0.42 3.66 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -29.94 317.84 -4.95 -34.89 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -1.69 Total: 7.84 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 0.05 Total: 15.80 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 0.41 Total: -28.48 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -1.52 Total: -51.49 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.97 Total: 4.52 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.94 -4.95 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737606338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.845 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds