Wall clock time and date at job start Tue Mar 31 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34842 * 116.99714 * 2 1 4 4 O 1.21566 * 119.99994 * 0.02562 * 3 2 1 5 5 C 1.46917 * 119.99772 * 180.02562 * 3 2 1 6 6 C 1.36770 * 125.15830 * 180.02562 * 5 3 2 7 7 C 1.36676 * 114.74481 * 179.97438 * 6 5 3 8 8 C 1.36790 * 114.73922 * 359.97438 * 7 6 5 9 9 C 1.46989 * 125.16397 * 179.97438 * 8 7 6 10 10 O 1.21690 * 120.00024 * 353.05589 * 9 8 7 11 11 N 1.34770 * 120.00392 * 173.05748 * 9 8 7 12 12 C 1.36689 * 119.99675 * 4.04008 * 11 9 8 13 13 H 1.07996 * 120.00279 * 307.92722 * 12 11 9 14 14 C 1.39158 * 119.99510 * 127.93146 * 12 11 9 15 15 N 1.31290 * 120.00487 * 4.01375 * 14 12 11 16 16 Si 1.86805 * 119.99715 * 184.01148 * 14 12 11 17 17 H 1.48503 * 109.46795 * 59.99966 * 16 14 12 18 18 H 1.48500 * 109.46967 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47100 * 300.00046 * 16 14 12 20 20 C 1.46502 * 120.00375 * 184.04676 * 11 9 8 21 21 C 1.50703 * 109.47353 * 84.75580 * 20 11 9 22 22 O 1.20825 * 119.99570 * 0.02562 * 21 20 11 23 23 O 1.34224 * 119.99977 * 179.97438 * 21 20 11 24 24 S 1.75828 * 109.67403 * 359.97438 * 8 7 6 25 25 H 1.08997 * 109.47509 * 59.99790 * 1 2 3 26 26 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47146 * 299.99069 * 1 2 3 28 28 H 1.08005 * 122.62637 * 359.97438 * 6 5 3 29 29 H 1.08001 * 122.62950 * 179.73383 * 7 6 5 30 30 H 0.96998 * 120.00546 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47272 * 204.75817 * 20 11 9 32 32 H 1.09003 * 109.46871 * 324.75598 * 20 11 9 33 33 H 0.96700 * 117.00116 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4020 2.2210 0.0005 5 6 3.5313 1.2784 -0.0006 6 6 4.2592 2.4363 -0.0001 7 6 5.6146 2.2599 -0.0003 8 6 6.0219 0.9541 -0.0003 9 6 7.4212 0.5038 -0.0009 10 8 8.3208 1.3133 -0.1289 11 7 7.7079 -0.8054 0.1402 12 6 6.6972 -1.7237 0.2010 13 1 5.8882 -1.5905 0.9039 14 6 6.7108 -2.8301 -0.6428 15 7 7.7326 -3.0341 -1.4415 16 14 5.2751 -4.0253 -0.6390 17 1 4.0308 -3.3053 -1.0114 18 1 5.5320 -5.1106 -1.6195 19 1 5.1215 -4.6102 0.7172 20 6 9.1028 -1.2445 0.2286 21 6 9.5761 -1.1300 1.6548 22 8 8.8251 -0.7237 2.5097 23 8 10.8316 -1.4802 1.9754 24 16 4.6177 -0.1041 0.0007 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.7991 3.4134 0.0003 29 1 6.3094 3.0867 -0.0042 30 1 7.7423 -3.8056 -2.0294 31 1 9.1785 -2.2820 -0.0971 32 1 9.7226 -0.6166 -0.4115 33 1 11.0893 -1.3897 2.9030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737678390.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:44 Heat of formation + Delta-G solvation = -188.240819 kcal Electronic energy + Delta-G solvation = -23635.272291 eV Core-core repulsion = 19752.757461 eV Total energy + Delta-G solvation = -3882.514830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47074 -41.36325 -40.27180 -38.35980 -37.36997 -37.05475 -36.70849 -33.79664 -31.72705 -29.95637 -28.56116 -27.21597 -26.02746 -23.40784 -22.80997 -21.74021 -20.51423 -19.96009 -19.11822 -18.64692 -18.37281 -17.46031 -17.41252 -17.32342 -16.78071 -16.62871 -16.18924 -16.14964 -15.60726 -15.24664 -14.55189 -14.48429 -14.07246 -14.01827 -13.57747 -13.43406 -13.35790 -13.20616 -13.15042 -12.92704 -12.74845 -12.44747 -12.13648 -11.94173 -11.84301 -11.71736 -11.49989 -11.05635 -10.80589 -9.92145 -9.62417 -9.41165 -8.55669 -6.54212 -0.88432 0.58904 0.92916 1.09661 1.28821 1.46669 1.49632 1.56076 1.67023 1.77795 1.97715 2.20099 2.47092 2.73074 2.95548 3.86480 4.04220 4.26835 4.29990 4.34260 4.40595 4.44137 4.51692 4.69041 4.82627 4.95328 5.09871 5.21607 5.26774 5.33196 5.61527 5.73709 6.09601 6.58913 6.79980 7.04566 7.17274 7.63271 8.46677 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.005550 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.465649 B = 5043.460250 C = 6358.164646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.548 3.452 4 O -0.528 6.528 5 C -0.328 4.328 6 C -0.054 4.054 7 C -0.106 4.106 8 C -0.220 4.220 9 C 0.541 3.459 10 O -0.609 6.609 11 N -0.427 5.427 12 C -0.370 4.370 13 H 0.102 0.898 14 C 0.041 3.959 15 N -0.865 5.865 16 Si 0.952 3.048 17 H -0.240 1.240 18 H -0.267 1.267 19 H -0.258 1.258 20 C 0.123 3.877 21 C 0.469 3.531 22 O -0.548 6.548 23 O -0.508 6.508 24 S 0.339 5.661 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.290 0.710 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -1.647 1.476 7.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.394 3.606 4 O -0.420 6.420 5 C -0.446 4.446 6 C -0.087 4.087 7 C -0.139 4.139 8 C -0.342 4.342 9 C 0.331 3.669 10 O -0.497 6.497 11 N -0.145 5.145 12 C -0.503 4.503 13 H 0.119 0.881 14 C -0.170 4.170 15 N -0.497 5.497 16 Si 0.771 3.229 17 H -0.164 1.164 18 H -0.191 1.191 19 H -0.182 1.182 20 C -0.002 4.002 21 C 0.312 3.688 22 O -0.438 6.438 23 O -0.321 6.321 24 S 0.616 5.384 25 H 0.086 0.914 26 H 0.152 0.848 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.118 0.882 33 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -7.334 -2.664 1.075 7.877 hybrid contribution 0.076 1.225 0.657 1.392 sum -7.258 -1.439 1.732 7.600 Atomic orbital electron populations 1.23654 0.73680 1.06066 1.03021 1.86604 1.25858 1.31366 1.84046 1.19844 0.87185 0.81700 0.71919 1.90796 1.66700 1.36589 1.47942 1.25198 0.95515 1.04476 1.19425 1.20404 0.91681 0.98806 0.97851 1.20470 0.95708 0.95522 1.02199 1.25012 0.98030 0.98991 1.12194 1.17845 0.87059 0.83170 0.78780 1.90634 1.47954 1.54620 1.56480 1.42898 1.04998 1.04541 1.62026 1.19532 1.02765 1.05757 1.22226 0.88147 1.26379 0.99452 0.98909 0.92237 1.69630 1.29927 1.29156 1.21003 0.85575 0.79294 0.78231 0.79774 1.16368 1.19135 1.18192 1.21077 0.84647 1.06164 0.88293 1.24630 0.79257 0.71726 0.93184 1.90628 1.56729 1.44383 1.52096 1.84511 1.30457 1.79744 1.37387 1.85423 0.89554 1.01522 1.61893 0.91411 0.84751 0.91359 0.81943 0.82630 0.89965 0.83584 0.88218 0.71691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.57 113.37 1.20 1.75 16 2 O -0.36 -10.57 10.41 -57.55 -0.60 -11.17 16 3 C 0.55 18.36 7.94 70.09 0.56 18.91 16 4 O -0.53 -18.83 16.61 19.62 0.33 -18.50 16 5 C -0.33 -11.58 6.46 24.20 0.16 -11.42 16 6 C -0.05 -1.82 9.88 21.56 0.21 -1.61 16 7 C -0.11 -3.98 9.89 21.56 0.21 -3.77 16 8 C -0.22 -9.51 6.31 24.23 0.15 -9.36 16 9 C 0.54 26.82 7.43 86.54 0.64 27.46 16 10 O -0.61 -32.34 16.47 -4.32 -0.07 -32.41 16 11 N -0.43 -20.63 2.00 -643.83 -1.29 -21.92 16 12 C -0.37 -17.12 6.70 84.16 0.56 -16.56 16 13 H 0.10 4.58 5.49 -14.95 -0.08 4.50 16 14 C 0.04 1.77 5.34 84.99 0.45 2.23 16 15 N -0.86 -39.17 11.26 21.70 0.24 -38.92 16 16 Si 0.95 33.62 29.56 68.60 2.03 35.65 16 17 H -0.24 -8.03 7.11 99.48 0.71 -7.33 16 18 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 19 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 20 C 0.12 5.48 5.46 85.63 0.47 5.95 16 21 C 0.47 19.52 8.36 71.24 0.60 20.12 16 22 O -0.55 -26.13 17.07 21.97 0.37 -25.75 16 23 O -0.51 -15.92 13.42 -51.36 -0.69 -16.61 16 24 S 0.34 13.02 18.40 -56.49 -1.04 11.98 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.16 4.69 8.04 -2.91 -0.02 4.67 16 29 H 0.16 5.50 8.05 -2.91 -0.02 5.48 16 30 H 0.29 12.16 8.31 -92.71 -0.77 11.39 16 31 H 0.15 6.51 5.84 -2.39 -0.01 6.49 16 32 H 0.10 4.43 7.53 -2.39 -0.02 4.41 16 33 H 0.42 8.79 9.10 -74.06 -0.67 8.12 16 Total: -1.00 -63.63 317.64 4.96 -58.68 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.46 Total: 25.27 kcal Atomic # 6 Polarization: 28.50 SS G_CDS: 5.21 Total: 33.71 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -1.04 Total: -60.84 kcal Atomic # 8 Polarization: -103.78 SS G_CDS: -0.66 Total: -104.44 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Atomic # 16 Polarization: 13.02 SS G_CDS: -1.04 Total: 11.98 kcal Total: -63.63 4.96 -58.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737678390.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.564 kcal (2) G-P(sol) polarization free energy of solvation -63.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds