Wall clock time and date at job start Tue Mar 31 2020 04:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99970 * 2 1 4 4 O 1.20815 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99554 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46654 * 179.97438 * 5 3 2 7 7 C 1.36797 * 120.00116 * 278.93305 * 6 5 3 8 8 H 1.07996 * 120.00076 * 38.80948 * 7 6 5 9 9 C 1.39101 * 119.99728 * 218.79988 * 7 6 5 10 10 N 1.31320 * 120.00108 * 18.21960 * 9 7 6 11 11 Si 1.86807 * 119.99692 * 198.21527 * 9 7 6 12 12 H 1.48497 * 109.46802 * 94.99045 * 11 9 7 13 13 H 1.48503 * 109.46838 * 214.98652 * 11 9 7 14 14 H 1.48500 * 109.47311 * 334.98564 * 11 9 7 15 15 C 1.34779 * 119.99740 * 98.94009 * 6 5 3 16 16 O 1.21556 * 119.99875 * 186.46710 * 15 6 5 17 17 C 1.48014 * 119.99959 * 6.45399 * 15 6 5 18 18 C 1.39666 * 120.87867 * 152.20037 * 17 15 6 19 19 C 1.39004 * 118.95291 * 180.26036 * 18 17 15 20 20 N 1.39038 * 119.62900 * 179.74499 * 19 18 17 21 21 N 1.32382 * 120.73814 * 359.76615 * 19 18 17 22 22 C 1.31998 * 121.94788 * 359.97438 * 21 19 18 23 23 Cl 1.73605 * 119.51301 * 179.97438 * 22 21 19 24 24 C 1.38129 * 120.97487 * 0.02562 * 22 21 19 25 25 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46917 * 299.99891 * 1 2 3 27 27 H 1.08994 * 109.47221 * 59.99929 * 1 2 3 28 28 H 1.09006 * 109.47086 * 60.00527 * 5 3 2 29 29 H 1.08998 * 109.47344 * 300.00169 * 5 3 2 30 30 H 0.97005 * 120.00034 * 184.90696 * 10 9 7 31 31 H 1.08005 * 120.52643 * 359.97438 * 18 17 15 32 32 H 0.96997 * 119.99428 * 180.02562 * 20 19 18 33 33 H 0.96994 * 119.99906 * 0.02562 * 20 19 18 34 34 H 1.07997 * 120.42743 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 3.9997 3.3870 -1.1709 8 1 3.2185 3.2410 -1.9021 9 6 5.0243 4.2944 -1.4195 10 7 6.1421 4.2268 -0.7336 11 14 4.8101 5.6092 -2.7292 12 1 4.3310 6.8644 -2.0966 13 1 6.1122 5.8579 -3.3985 14 1 3.8169 5.1504 -3.7334 15 6 4.3462 3.2752 1.1527 16 8 4.5774 4.4684 1.1738 17 6 4.4648 2.4763 2.3931 18 6 5.3413 2.8587 3.4110 19 6 5.4247 2.0759 4.5566 20 7 6.2965 2.4407 5.5764 21 7 4.6835 0.9869 4.6873 22 6 3.8411 0.5984 3.7483 23 17 2.9002 -0.8411 3.9857 24 6 3.6978 1.3198 2.5791 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 6.8280 4.9017 -0.8562 31 1 5.9483 3.7461 3.3076 32 1 6.3592 1.8981 6.3780 33 1 6.8420 3.2376 5.4862 34 1 3.0056 0.9942 1.8169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737856947.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:52 Heat of formation + Delta-G solvation = -56.994927 kcal Electronic energy + Delta-G solvation = -24353.763684 eV Core-core repulsion = 20507.189148 eV Total energy + Delta-G solvation = -3846.574536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.16255 -41.18786 -39.88236 -37.82301 -37.50976 -36.30299 -35.73500 -34.35398 -33.13643 -30.77259 -29.80763 -27.87279 -27.30748 -24.95810 -24.25818 -22.49776 -21.60440 -19.50078 -18.73885 -18.53189 -18.50619 -18.09827 -17.36927 -17.11293 -16.74900 -16.59199 -16.06722 -15.89344 -15.78058 -15.43874 -15.00665 -14.52452 -14.37272 -14.01533 -13.54488 -13.44456 -13.22723 -12.92153 -12.86855 -12.83015 -12.47204 -12.32641 -12.09107 -11.73608 -11.72101 -11.45336 -11.11137 -10.90842 -10.76976 -10.29552 -9.42864 -8.95539 -8.32538 -6.08813 -0.26734 -0.02686 0.62250 1.14476 1.38071 1.45873 1.51230 1.61490 2.12622 2.36709 2.47743 2.72801 2.90648 3.16808 3.54633 3.75046 3.89006 3.96830 4.06441 4.13273 4.19557 4.38652 4.38869 4.48850 4.50884 4.75062 5.03237 5.15872 5.33505 5.40752 6.02594 6.12154 6.31380 6.75716 6.79731 6.95590 7.07713 7.40862 8.04055 8.75077 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.006529 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.862683 B = 4287.343171 C = 6314.824417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.443 3.557 4 O -0.523 6.523 5 C 0.070 3.930 6 N -0.431 5.431 7 C -0.353 4.353 8 H 0.081 0.919 9 C 0.022 3.978 10 N -0.853 5.853 11 Si 0.972 3.028 12 H -0.291 1.291 13 H -0.272 1.272 14 H -0.257 1.257 15 C 0.501 3.499 16 O -0.563 6.563 17 C -0.019 4.019 18 C -0.193 4.193 19 C 0.430 3.570 20 N -0.823 5.823 21 N -0.543 5.543 22 C 0.228 3.772 23 Cl -0.009 7.009 24 C -0.231 4.231 25 H 0.140 0.860 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.130 0.870 29 H 0.153 0.847 30 H 0.267 0.733 31 H 0.140 0.860 32 H 0.417 0.583 33 H 0.424 0.576 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 -11.494 8.489 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.285 3.715 4 O -0.411 6.411 5 C -0.055 4.055 6 N -0.150 5.150 7 C -0.480 4.480 8 H 0.099 0.901 9 C -0.185 4.185 10 N -0.488 5.488 11 Si 0.797 3.203 12 H -0.218 1.218 13 H -0.197 1.197 14 H -0.181 1.181 15 C 0.290 3.710 16 O -0.443 6.443 17 C -0.030 4.030 18 C -0.220 4.220 19 C 0.190 3.810 20 N -0.369 5.369 21 N -0.265 5.265 22 C 0.063 3.937 23 Cl 0.020 6.980 24 C -0.255 4.255 25 H 0.158 0.842 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.148 0.852 29 H 0.169 0.831 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.249 0.751 33 H 0.257 0.743 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.139 -11.167 9.204 14.808 hybrid contribution -0.188 1.500 -1.129 1.887 sum -3.327 -9.666 8.075 13.028 Atomic orbital electron populations 1.23572 0.75015 1.05883 1.02238 1.86514 1.24844 1.31793 1.83855 1.24698 0.93003 0.81725 0.72052 1.90677 1.67373 1.37728 1.45314 1.22333 0.87026 0.87079 1.09055 1.42948 1.58241 1.07764 1.06067 1.19283 1.07903 1.24794 0.96006 0.90137 1.25975 0.92885 1.00402 0.99280 1.69899 1.05040 1.32385 1.41431 0.85259 0.78137 0.78630 0.78304 1.21778 1.19748 1.18086 1.18171 0.83301 0.86886 0.82608 1.90558 1.52644 1.16470 1.84663 1.20360 0.94576 0.93264 0.94846 1.21493 1.03495 1.03272 0.93719 1.17900 0.88121 0.87321 0.87620 1.42102 1.43642 1.32384 1.18752 1.66279 1.10751 1.17297 1.32202 1.21073 0.92680 0.90444 0.89478 1.98391 1.68587 1.33980 1.97030 1.22261 1.06231 0.97408 0.99619 0.84156 0.92300 0.92465 0.85244 0.83059 0.92368 0.84193 0.75148 0.74331 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.35 -10.33 10.57 -51.41 -0.54 -10.88 16 3 C 0.44 16.74 6.19 71.24 0.44 17.18 16 4 O -0.52 -23.92 15.95 22.00 0.35 -23.57 16 5 C 0.07 2.73 5.47 85.63 0.47 3.20 16 6 N -0.43 -21.96 2.13 -642.71 -1.37 -23.33 16 7 C -0.35 -19.65 8.96 84.13 0.75 -18.89 16 8 H 0.08 4.43 7.90 -2.91 -0.02 4.41 16 9 C 0.02 1.26 4.39 84.98 0.37 1.63 16 10 N -0.85 -49.70 11.42 21.69 0.25 -49.45 16 11 Si 0.97 45.09 29.60 68.60 2.03 47.12 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 15 C 0.50 26.48 6.64 86.84 0.58 27.06 16 16 O -0.56 -34.36 14.36 -3.89 -0.06 -34.41 16 17 C -0.02 -0.81 5.64 -19.91 -0.11 -0.92 16 18 C -0.19 -7.15 9.52 22.80 0.22 -6.93 16 19 C 0.43 12.86 7.74 133.02 1.03 13.89 16 20 N -0.82 -16.30 9.07 -55.50 -0.50 -16.81 16 21 N -0.54 -16.73 10.34 -184.30 -1.91 -18.64 16 22 C 0.23 7.19 7.26 84.64 0.61 7.80 16 23 Cl -0.01 -0.22 29.10 -2.72 -0.08 -0.30 16 24 C -0.23 -8.29 7.40 22.67 0.17 -8.12 16 25 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 27 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.13 4.54 8.11 -2.38 -0.02 4.52 16 29 H 0.15 5.31 3.86 -3.32 -0.01 5.29 16 30 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 31 H 0.14 5.29 7.96 -2.91 -0.02 5.26 16 32 H 0.42 6.42 8.95 -92.71 -0.83 5.59 16 33 H 0.42 6.62 8.82 -92.71 -0.82 5.80 16 34 H 0.16 5.43 3.21 -2.91 -0.01 5.42 16 Total: -1.00 -76.22 315.15 3.46 -72.77 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.44 Total: 19.83 kcal Atomic # 6 Polarization: 31.93 SS G_CDS: 5.73 Total: 37.66 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.53 Total: -108.23 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -0.25 Total: -68.86 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -76.22 3.46 -72.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737856947.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.773 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds