Wall clock time and date at job start Tue Mar 31 2020 04:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48503 * 109.47395 * 240.00471 * 3 2 1 5 5 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47142 * 120.00188 * 3 2 1 7 7 C 1.37878 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99623 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99924 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99951 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.34729 * 117.00054 * 180.02562 * 14 13 11 16 16 O 1.21491 * 119.99877 * 359.72085 * 15 14 13 17 17 C 1.47599 * 120.00106 * 179.97438 * 15 14 13 18 18 C 1.40099 * 120.97773 * 5.54417 * 17 15 14 19 19 C 1.37842 * 119.11628 * 179.79570 * 18 17 15 20 20 N 1.31989 * 121.15780 * 0.49309 * 19 18 17 21 21 C 1.31618 * 122.17722 * 359.74025 * 20 19 18 22 22 Cl 1.73605 * 119.63123 * 179.97438 * 21 20 19 23 23 C 1.39384 * 120.73665 * 0.02562 * 21 20 19 24 24 N 1.38896 * 120.61980 * 180.02562 * 23 21 20 25 25 H 0.96996 * 120.00357 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47206 * 60.00112 * 9 7 2 27 27 H 1.09003 * 109.46837 * 300.00036 * 9 7 2 28 28 H 0.97002 * 120.00074 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.46965 * 60.00161 * 13 11 10 30 30 H 1.08995 * 109.47335 * 300.00192 * 13 11 10 31 31 H 1.08006 * 120.44047 * 0.02593 * 18 17 15 32 32 H 1.07997 * 119.41677 * 180.25136 * 19 18 17 33 33 H 0.96994 * 120.00186 * 198.34427 * 24 23 21 34 34 H 0.97005 * 119.99574 * 18.34399 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1049 0.0009 13 6 2.7333 -6.0287 -0.0006 14 8 2.0073 -7.2862 -0.0005 15 6 2.7412 -8.4161 -0.0004 16 8 3.9544 -8.3525 -0.0056 17 6 2.0711 -9.7313 0.0003 18 6 0.6785 -9.8311 -0.1152 19 6 0.0932 -11.0791 -0.1145 20 7 0.8204 -12.1744 0.0024 21 6 2.1309 -12.1366 0.1184 22 17 3.0224 -13.6186 0.2689 23 6 2.8108 -10.9198 0.1229 24 7 4.1939 -10.8828 0.2449 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1569 -3.4353 -0.0009 29 1 3.3606 -5.9707 0.8889 30 1 3.3593 -5.9710 -0.8910 31 1 0.0719 -8.9422 -0.2073 32 1 -0.9796 -11.1619 -0.2073 33 1 4.6354 -10.0615 0.5120 34 1 4.7183 -11.6784 0.0630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768565773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:46 Heat of formation + Delta-G solvation = -89.176115 kcal Electronic energy + Delta-G solvation = -22205.593451 eV Core-core repulsion = 18357.623434 eV Total energy + Delta-G solvation = -3847.970017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31385 -40.07276 -38.77915 -37.04973 -36.83330 -35.39623 -34.32865 -32.79673 -32.45934 -29.70378 -29.22415 -26.89089 -25.32655 -23.51204 -22.68948 -21.67478 -20.04826 -18.79542 -18.10231 -17.62396 -17.28297 -17.05439 -16.79238 -15.90039 -15.62135 -15.35270 -15.10598 -15.01968 -14.62736 -14.58566 -14.26261 -13.22775 -13.16464 -12.89360 -12.53396 -12.12857 -12.04438 -11.88938 -11.82696 -11.68324 -11.17091 -11.06908 -10.97717 -10.87113 -10.39171 -10.11864 -9.98382 -9.50921 -9.28524 -8.83082 -8.27420 -8.06422 -6.23923 -4.31794 0.13763 0.69279 1.35994 2.14935 2.17117 3.07119 3.20548 3.20989 3.26198 3.27381 3.28728 3.77253 4.15389 4.20720 4.27919 4.36626 4.67710 4.82878 4.99389 5.09191 5.12774 5.21905 5.25408 5.49167 5.93086 6.03816 6.70035 7.14781 7.19297 7.23123 7.33457 7.38941 7.39674 7.55315 7.86843 8.41745 8.64241 8.88023 9.34688 10.86071 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.042797 B = 0.002156 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.092359 B =12983.622543 C =13610.695105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.050 3.950 14 O -0.318 6.318 15 C 0.524 3.476 16 O -0.513 6.513 17 C -0.161 4.161 18 C -0.052 4.052 19 C 0.042 3.958 20 N -0.413 5.413 21 C 0.092 3.908 22 Cl -0.028 7.028 23 C 0.251 3.749 24 N -0.839 5.839 25 H 0.268 0.732 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.420 0.580 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -23.432 0.205 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.282 3.718 12 O -0.410 6.410 13 C -0.028 4.028 14 O -0.231 6.231 15 C 0.370 3.630 16 O -0.403 6.403 17 C -0.175 4.175 18 C -0.072 4.072 19 C -0.114 4.114 20 N -0.123 5.123 21 C -0.081 4.081 22 Cl 0.000 7.000 23 C 0.135 3.865 24 N -0.383 5.383 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.182 0.818 32 H 0.191 0.809 33 H 0.258 0.742 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.398 -24.228 0.226 25.060 hybrid contribution 1.897 1.714 0.025 2.557 sum 8.295 -22.514 0.252 23.995 Atomic orbital electron populations 1.69956 1.06114 1.27595 1.48451 1.24952 0.94946 0.99504 0.94559 0.86443 0.79399 0.82156 0.78729 1.20022 1.21021 1.20031 1.21159 0.93288 0.90289 1.53809 0.91815 1.19186 0.88126 0.81464 0.98078 1.46370 1.11582 1.05303 1.72268 1.19828 0.89071 0.83959 0.78917 1.90714 1.16236 1.84509 1.49589 1.22959 0.94506 0.80440 1.04875 1.86593 1.39617 1.13774 1.83157 1.20676 0.85179 0.84644 0.72527 1.90639 1.14790 1.87465 1.47454 1.18814 0.94300 0.88949 1.15461 1.22590 0.93035 1.00837 0.90762 1.22391 1.00327 0.85827 1.02880 1.66637 1.04949 1.33880 1.06869 1.20993 0.89903 0.86038 1.11131 1.98389 1.72126 1.33174 1.96299 1.18133 0.86092 0.91222 0.91039 1.43009 1.02681 1.18808 1.73826 0.92263 0.95193 0.95202 0.77391 0.88212 0.88192 0.81840 0.80900 0.74159 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 8 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 9 C 0.25 6.36 5.43 -5.20 -0.03 6.33 16 10 N -0.71 -13.81 5.55 -61.48 -0.34 -14.16 16 11 C 0.50 9.34 7.91 -10.99 -0.09 9.26 16 12 O -0.53 -12.24 16.50 -14.10 -0.23 -12.48 16 13 C 0.05 0.68 5.95 36.00 0.21 0.89 16 14 O -0.32 -4.50 9.12 -47.25 -0.43 -4.93 16 15 C 0.52 6.55 7.89 34.55 0.27 6.82 16 16 O -0.51 -6.55 13.70 -19.26 -0.26 -6.81 16 17 C -0.16 -1.77 5.92 -104.52 -0.62 -2.39 16 18 C -0.05 -0.50 9.69 -39.03 -0.38 -0.87 16 19 C 0.04 0.38 11.15 -17.63 -0.20 0.18 16 20 N -0.41 -4.38 10.30 -10.24 -0.11 -4.48 16 21 C 0.09 0.95 7.30 -17.22 -0.13 0.82 16 22 Cl -0.03 -0.24 27.87 -51.86 -1.45 -1.69 16 23 C 0.25 2.54 6.80 -83.37 -0.57 1.98 16 24 N -0.84 -7.05 8.57 32.67 0.28 -6.77 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.39 6.40 8.32 -40.82 -0.34 6.06 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.17 8.13 -51.93 -0.42 0.74 16 31 H 0.16 1.47 7.72 -52.48 -0.41 1.06 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.42 3.77 5.99 -40.82 -0.24 3.53 16 34 H 0.40 2.60 7.74 -40.82 -0.32 2.29 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -32.24 324.85 -6.81 -39.05 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.95 Total: 6.65 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.93 Total: 10.07 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.57 Total: -50.00 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.93 Total: -24.22 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.45 Total: -1.69 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.24 -6.81 -39.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768565773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.126 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds