Wall clock time and date at job start Tue Mar 31 2020 04:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48503 * 109.47395 * 240.00471 * 3 2 1 5 5 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47142 * 120.00188 * 3 2 1 7 7 C 1.37878 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99623 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99924 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99951 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.34729 * 117.00054 * 180.02562 * 14 13 11 16 16 O 1.21491 * 119.99877 * 359.72085 * 15 14 13 17 17 C 1.47599 * 120.00106 * 179.97438 * 15 14 13 18 18 C 1.40099 * 120.97773 * 5.54417 * 17 15 14 19 19 C 1.37842 * 119.11628 * 179.79570 * 18 17 15 20 20 N 1.31989 * 121.15780 * 0.49309 * 19 18 17 21 21 C 1.31618 * 122.17722 * 359.74025 * 20 19 18 22 22 Cl 1.73605 * 119.63123 * 179.97438 * 21 20 19 23 23 C 1.39384 * 120.73665 * 0.02562 * 21 20 19 24 24 N 1.38896 * 120.61980 * 180.02562 * 23 21 20 25 25 H 0.96996 * 120.00357 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47206 * 60.00112 * 9 7 2 27 27 H 1.09003 * 109.46837 * 300.00036 * 9 7 2 28 28 H 0.97002 * 120.00074 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.46965 * 60.00161 * 13 11 10 30 30 H 1.08995 * 109.47335 * 300.00192 * 13 11 10 31 31 H 1.08006 * 120.44047 * 0.02593 * 18 17 15 32 32 H 1.07997 * 119.41677 * 180.25136 * 19 18 17 33 33 H 0.96994 * 120.00186 * 198.34427 * 24 23 21 34 34 H 0.97005 * 119.99574 * 18.34399 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1049 0.0009 13 6 2.7333 -6.0287 -0.0006 14 8 2.0073 -7.2862 -0.0005 15 6 2.7412 -8.4161 -0.0004 16 8 3.9544 -8.3525 -0.0056 17 6 2.0711 -9.7313 0.0003 18 6 0.6785 -9.8311 -0.1152 19 6 0.0932 -11.0791 -0.1145 20 7 0.8204 -12.1744 0.0024 21 6 2.1309 -12.1366 0.1184 22 17 3.0224 -13.6186 0.2689 23 6 2.8108 -10.9198 0.1229 24 7 4.1939 -10.8828 0.2449 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1569 -3.4353 -0.0009 29 1 3.3606 -5.9707 0.8889 30 1 3.3593 -5.9710 -0.8910 31 1 0.0719 -8.9422 -0.2073 32 1 -0.9796 -11.1619 -0.2073 33 1 4.6354 -10.0615 0.5120 34 1 4.7183 -11.6784 0.0630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768565773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:45 Heat of formation + Delta-G solvation = -112.634359 kcal Electronic energy + Delta-G solvation = -22206.610677 eV Core-core repulsion = 18357.623434 eV Total energy + Delta-G solvation = -3848.987243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.20519 -41.05650 -40.24044 -37.87074 -37.74968 -36.22567 -36.12497 -34.41110 -33.57472 -30.86154 -30.25834 -28.58135 -26.27502 -24.66092 -24.15393 -22.64125 -21.65019 -19.72421 -19.25636 -18.61969 -18.39468 -18.04992 -17.81089 -17.47607 -16.96876 -16.53297 -16.38608 -16.10807 -15.84694 -15.60692 -15.29515 -14.69088 -14.51669 -14.12430 -13.89586 -13.68280 -13.42643 -12.95417 -12.83235 -12.68046 -12.57714 -12.38678 -12.23885 -12.10015 -11.98223 -11.51682 -10.95719 -10.86241 -10.79852 -10.74496 -9.91780 -8.98393 -8.28786 -6.45217 -0.68030 -0.04115 0.60597 1.14021 1.24795 1.45305 1.48215 1.56504 1.56594 2.32543 2.49861 2.52459 2.52661 3.06485 3.31986 3.43673 3.52055 3.68873 3.93665 4.02016 4.05582 4.17212 4.45393 4.77764 4.99596 5.10839 5.23494 5.30318 5.42495 5.63293 5.83155 5.99657 6.37661 6.57041 6.61965 6.63733 6.78488 7.21393 7.36631 8.82893 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.042797 B = 0.002156 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.092359 B =12983.622543 C =13610.695105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.581 6.581 13 C 0.062 3.938 14 O -0.335 6.335 15 C 0.527 3.473 16 O -0.517 6.517 17 C -0.177 4.177 18 C -0.050 4.050 19 C 0.045 3.955 20 N -0.427 5.427 21 C 0.083 3.917 22 Cl -0.017 7.017 23 C 0.250 3.750 24 N -0.830 5.830 25 H 0.269 0.731 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.413 0.587 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.167 0.833 32 H 0.201 0.799 33 H 0.419 0.581 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.516 -23.829 0.195 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.461 6.461 13 C -0.015 4.015 14 O -0.249 6.249 15 C 0.373 3.627 16 O -0.407 6.407 17 C -0.191 4.191 18 C -0.071 4.071 19 C -0.111 4.111 20 N -0.138 5.138 21 C -0.090 4.090 22 Cl 0.011 6.989 23 C 0.133 3.867 24 N -0.375 5.375 25 H 0.078 0.922 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.249 0.751 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.184 0.816 32 H 0.218 0.782 33 H 0.257 0.743 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 8.571 -24.669 0.215 26.116 hybrid contribution 1.218 1.722 0.031 2.109 sum 9.789 -22.947 0.247 24.949 Atomic orbital electron populations 1.70118 1.08191 1.28664 1.49793 1.26035 0.95766 1.03820 0.93906 0.85225 0.77905 0.76732 0.79469 1.18699 1.21282 1.18707 1.21585 0.94426 0.90436 1.53070 0.89592 1.18616 0.88554 0.83737 0.94642 1.46032 1.11738 1.04729 1.72521 1.20654 0.89316 0.84668 0.76872 1.90692 1.18823 1.85257 1.51374 1.22826 0.92568 0.78478 1.07600 1.86575 1.40454 1.14233 1.83650 1.20829 0.85140 0.84466 0.72243 1.90634 1.14822 1.87475 1.47808 1.18857 0.94965 0.88449 1.16848 1.22685 0.92650 1.01347 0.90380 1.22831 1.01481 0.85098 1.01724 1.66709 1.05248 1.34580 1.07272 1.21140 0.90051 0.86542 1.11285 1.98388 1.71843 1.32439 1.96237 1.18135 0.86634 0.90953 0.90942 1.42981 1.02176 1.19174 1.73165 0.92225 0.98898 0.98913 0.75094 0.85293 0.85395 0.81554 0.78190 0.74294 0.75486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.29 21.45 0.28 -54.25 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 41.01 29.54 68.60 2.03 43.04 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.56 -29.00 9.28 25.60 0.24 -28.77 16 8 H 0.09 3.99 7.60 -2.91 -0.02 3.96 16 9 C 0.27 13.92 5.43 85.63 0.46 14.39 16 10 N -0.70 -27.20 5.55 -466.80 -2.59 -29.79 16 11 C 0.50 18.56 7.91 87.66 0.69 19.25 16 12 O -0.58 -27.43 16.50 15.77 0.26 -27.17 16 13 C 0.06 1.56 5.95 71.24 0.42 1.99 16 14 O -0.33 -9.07 9.12 -50.00 -0.46 -9.53 16 15 C 0.53 12.39 7.89 70.29 0.55 12.94 16 16 O -0.52 -12.14 13.70 19.87 0.27 -11.86 16 17 C -0.18 -3.69 5.92 -19.80 -0.12 -3.81 16 18 C -0.05 -0.91 9.69 22.63 0.22 -0.69 16 19 C 0.04 0.74 11.15 84.58 0.94 1.68 16 20 N -0.43 -8.51 10.30 -186.32 -1.92 -10.43 16 21 C 0.08 1.60 7.30 85.00 0.62 2.22 16 22 Cl -0.02 -0.28 27.87 -2.72 -0.08 -0.35 16 23 C 0.25 4.76 6.80 38.86 0.26 5.02 16 24 N -0.83 -12.76 8.57 -50.55 -0.43 -13.19 16 25 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.41 12.72 8.32 -92.71 -0.77 11.95 16 29 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.13 2.59 8.13 -2.39 -0.02 2.57 16 31 H 0.17 2.90 7.72 -2.91 -0.02 2.88 16 32 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.42 6.86 5.99 -92.71 -0.56 6.31 16 34 H 0.41 4.70 7.74 -92.70 -0.72 3.99 16 Total: -1.00 -71.14 324.85 1.30 -69.85 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.84 Total: 18.75 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 4.77 Total: 24.94 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.66 Total: -107.66 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: 0.08 Total: -48.56 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.35 kcal Total: -71.14 1.30 -69.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768565773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.788 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds