Wall clock time and date at job start Tue Mar 31 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99922 * 2 1 4 4 H 1.48501 * 109.47387 * 270.00189 * 3 2 1 5 5 H 1.48503 * 109.47130 * 29.99852 * 3 2 1 6 6 H 1.48497 * 109.47012 * 149.99945 * 3 2 1 7 7 C 1.38946 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00442 * 0.02562 * 7 2 1 9 9 N 1.37109 * 119.99656 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99645 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00279 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99979 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.47502 * 180.02562 * 12 10 9 14 14 C 1.34228 * 117.00583 * 180.02562 * 13 12 10 15 15 O 1.20836 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00633 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.47082 * 305.00485 * 16 14 13 18 18 O 1.42895 * 109.47402 * 184.99783 * 16 14 13 19 19 C 1.50707 * 109.46572 * 64.99942 * 16 14 13 20 20 C 1.38237 * 120.00392 * 95.23700 * 19 16 14 21 21 C 1.38219 * 120.01452 * 180.25422 * 20 19 16 22 22 C 1.38267 * 120.02305 * 359.74114 * 21 20 19 23 23 C 1.38195 * 120.01443 * 0.02562 * 22 21 20 24 24 C 1.38325 * 120.00626 * 274.99773 * 19 16 14 25 25 Cl 1.73599 * 120.01741 * 0.03066 * 24 19 16 26 26 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00276 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.47010 * 59.99955 * 12 10 9 29 29 H 1.09002 * 109.47349 * 300.00396 * 12 10 9 30 30 H 0.96696 * 114.00341 * 300.00464 * 18 16 14 31 31 H 1.08000 * 119.99782 * 359.97136 * 20 19 16 32 32 H 1.08001 * 119.99260 * 179.72556 * 21 20 19 33 33 H 1.08003 * 119.99358 * 180.02562 * 22 21 20 34 34 H 1.08001 * 120.00765 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5607 -2.3704 0.0000 13 8 6.0448 -3.7393 -0.0006 14 6 7.3755 -3.9152 -0.0002 15 8 8.1116 -2.9569 0.0012 16 6 7.9516 -5.3077 -0.0002 17 1 7.5455 -5.8690 0.8414 18 8 9.3738 -5.2349 0.1177 19 6 7.5892 -6.0012 -1.2882 20 6 8.4750 -5.9955 -2.3494 21 6 8.1407 -6.6269 -3.5326 22 6 6.9222 -7.2692 -3.6537 23 6 6.0378 -7.2797 -2.5918 24 6 6.3721 -6.6477 -1.4070 25 17 5.2613 -6.6600 -0.0730 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3632 0.0004 28 1 5.9241 -1.8565 0.8900 29 1 5.9241 -1.8565 -0.8900 30 1 9.8035 -4.7483 -0.5990 31 1 9.4268 -5.4936 -2.2556 32 1 8.8312 -6.6184 -4.3629 33 1 6.6616 -7.7628 -4.5783 34 1 5.0859 -7.7811 -2.6867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768598815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:19 Heat of formation + Delta-G solvation = -138.628027 kcal Electronic energy + Delta-G solvation = -23320.563506 eV Core-core repulsion = 19438.156342 eV Total energy + Delta-G solvation = -3882.407164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93728 -39.56011 -38.36693 -37.19596 -36.39897 -35.98874 -34.03750 -32.11881 -31.77565 -31.01644 -29.02257 -27.26144 -24.45292 -22.95934 -22.58894 -21.06864 -19.63636 -18.66179 -18.39003 -18.09637 -17.03903 -16.63811 -15.96827 -15.94250 -15.63652 -15.04377 -14.78743 -14.43340 -14.14396 -13.85521 -13.81153 -13.55970 -13.06375 -12.67937 -12.44782 -12.27867 -12.18427 -12.10717 -11.66131 -11.49792 -11.42979 -11.26374 -10.79545 -10.64927 -10.56254 -10.37992 -10.04261 -9.65543 -9.23714 -8.87034 -8.62739 -8.27580 -6.38209 -3.90807 0.77975 0.94359 2.01306 2.14545 2.46902 2.98992 3.03422 3.12128 3.30018 3.57552 3.86508 4.04136 4.07308 4.32988 4.43081 4.63370 4.81570 4.87164 5.01091 5.11646 5.19865 5.28887 5.32984 5.51806 5.53535 5.68094 5.91919 5.93393 6.08581 6.38384 6.45776 6.97257 7.45114 7.65758 8.02168 8.49255 8.85162 9.31321 9.67475 10.74203 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.003761 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.914488 B = 7442.461545 C = 8037.133186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.122 0.878 9 N -0.582 5.582 10 C 0.449 3.551 11 O -0.548 6.548 12 C 0.055 3.945 13 O -0.308 6.308 14 C 0.436 3.564 15 O -0.504 6.504 16 C 0.165 3.835 17 H 0.151 0.849 18 O -0.521 6.521 19 C -0.123 4.123 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.098 4.098 23 C -0.109 4.109 24 C -0.010 4.010 25 Cl -0.030 7.030 26 H 0.275 0.725 27 H 0.372 0.628 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.384 0.616 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.293 -11.630 -5.668 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.140 0.860 9 N -0.222 5.222 10 C 0.233 3.767 11 O -0.428 6.428 12 C -0.023 4.023 13 O -0.221 6.221 14 C 0.277 3.723 15 O -0.393 6.393 16 C 0.104 3.896 17 H 0.168 0.832 18 O -0.327 6.327 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.037 4.037 25 Cl 0.000 7.000 26 H 0.086 0.914 27 H 0.205 0.795 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.234 0.766 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.630 -12.260 -5.004 22.049 hybrid contribution 0.582 2.025 -0.404 2.145 sum 18.213 -10.235 -5.408 21.580 Atomic orbital electron populations 1.69611 1.05634 1.27692 1.48625 1.25020 0.95492 0.97994 0.97362 0.86697 0.79868 0.83988 0.79046 1.19463 1.19975 1.19403 1.19412 0.78655 0.96832 1.48527 0.86005 1.42037 1.07610 1.05675 1.66902 1.19144 0.86793 0.85230 0.85502 1.90623 1.68830 1.30459 1.52938 1.22814 0.95513 0.80510 1.03477 1.86638 1.22230 1.31057 1.82187 1.24438 0.82007 0.92891 0.72942 1.90671 1.60795 1.42241 1.45624 1.20244 0.82324 0.89175 0.97894 0.83228 1.86704 1.15342 1.77584 1.53092 1.19899 0.94860 1.01378 0.96352 1.20834 0.98955 0.99232 0.92241 1.21168 0.97168 0.97866 0.97458 1.21229 0.93553 0.98418 0.98463 1.21157 1.00674 0.99515 0.91396 1.20874 0.91431 0.99559 0.91824 1.98467 1.60362 1.96905 1.44289 0.91435 0.79499 0.89420 0.89578 0.76613 0.85072 0.85069 0.84826 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.96 55.50 0.77 -24.40 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.58 -13.73 5.09 -10.97 -0.06 -13.79 16 10 C 0.45 10.24 7.86 -10.99 -0.09 10.15 16 11 O -0.55 -14.53 16.08 -14.12 -0.23 -14.76 16 12 C 0.05 0.98 5.94 36.00 0.21 1.19 16 13 O -0.31 -5.41 8.49 -45.90 -0.39 -5.80 16 14 C 0.44 6.62 7.26 36.00 0.26 6.88 16 15 O -0.50 -8.28 16.07 -25.47 -0.41 -8.69 16 16 C 0.16 2.01 3.25 -29.03 -0.09 1.92 16 17 H 0.15 1.77 7.13 -51.93 -0.37 1.40 16 18 O -0.52 -5.67 12.64 -55.14 -0.70 -6.36 16 19 C -0.12 -1.43 5.04 -104.59 -0.53 -1.96 16 20 C -0.09 -0.87 9.30 -39.59 -0.37 -1.24 16 21 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.10 -0.85 10.05 -39.59 -0.40 -1.24 16 23 C -0.11 -1.16 9.83 -39.54 -0.39 -1.55 16 24 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 25 Cl -0.03 -0.43 26.16 -51.86 -1.36 -1.79 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 27 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 28 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 29 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 30 H 0.38 3.06 7.07 45.56 0.32 3.38 16 31 H 0.13 0.87 6.40 -52.49 -0.34 0.54 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -33.91 320.02 -6.82 -40.74 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.29 Total: 10.79 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.28 Total: 4.86 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.72 Total: -38.19 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.72 Total: -35.61 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.36 Total: -1.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.91 -6.82 -40.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768598815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.892 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds