Wall clock time and date at job start Tue Mar 31 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99922 * 2 1 4 4 H 1.48501 * 109.47387 * 270.00189 * 3 2 1 5 5 H 1.48503 * 109.47130 * 29.99852 * 3 2 1 6 6 H 1.48497 * 109.47012 * 149.99945 * 3 2 1 7 7 C 1.38946 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00442 * 0.02562 * 7 2 1 9 9 N 1.37109 * 119.99656 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99645 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00279 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99979 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.47502 * 180.02562 * 12 10 9 14 14 C 1.34228 * 117.00583 * 180.02562 * 13 12 10 15 15 O 1.20836 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00633 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.47082 * 305.00485 * 16 14 13 18 18 O 1.42895 * 109.47402 * 184.99783 * 16 14 13 19 19 C 1.50707 * 109.46572 * 64.99942 * 16 14 13 20 20 C 1.38237 * 120.00392 * 95.23700 * 19 16 14 21 21 C 1.38219 * 120.01452 * 180.25422 * 20 19 16 22 22 C 1.38267 * 120.02305 * 359.74114 * 21 20 19 23 23 C 1.38195 * 120.01443 * 0.02562 * 22 21 20 24 24 C 1.38325 * 120.00626 * 274.99773 * 19 16 14 25 25 Cl 1.73599 * 120.01741 * 0.03066 * 24 19 16 26 26 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00276 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.47010 * 59.99955 * 12 10 9 29 29 H 1.09002 * 109.47349 * 300.00396 * 12 10 9 30 30 H 0.96696 * 114.00341 * 300.00464 * 18 16 14 31 31 H 1.08000 * 119.99782 * 359.97136 * 20 19 16 32 32 H 1.08001 * 119.99260 * 179.72556 * 21 20 19 33 33 H 1.08003 * 119.99358 * 180.02562 * 22 21 20 34 34 H 1.08001 * 120.00765 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5607 -2.3704 0.0000 13 8 6.0448 -3.7393 -0.0006 14 6 7.3755 -3.9152 -0.0002 15 8 8.1116 -2.9569 0.0012 16 6 7.9516 -5.3077 -0.0002 17 1 7.5455 -5.8690 0.8414 18 8 9.3738 -5.2349 0.1177 19 6 7.5892 -6.0012 -1.2882 20 6 8.4750 -5.9955 -2.3494 21 6 8.1407 -6.6269 -3.5326 22 6 6.9222 -7.2692 -3.6537 23 6 6.0378 -7.2797 -2.5918 24 6 6.3721 -6.6477 -1.4070 25 17 5.2613 -6.6600 -0.0730 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3632 0.0004 28 1 5.9241 -1.8565 0.8900 29 1 5.9241 -1.8565 -0.8900 30 1 9.8035 -4.7483 -0.5990 31 1 9.4268 -5.4936 -2.2556 32 1 8.8312 -6.6184 -4.3629 33 1 6.6616 -7.7628 -4.5783 34 1 5.0859 -7.7811 -2.6867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768598815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:18 Heat of formation + Delta-G solvation = -162.387606 kcal Electronic energy + Delta-G solvation = -23321.593799 eV Core-core repulsion = 19438.156342 eV Total energy + Delta-G solvation = -3883.437457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07381 -40.59106 -40.02751 -38.27903 -37.37180 -37.16673 -36.04377 -33.84445 -32.93432 -31.75556 -30.44955 -28.37739 -26.33050 -23.71102 -23.53310 -22.11882 -21.51227 -20.52680 -19.50359 -19.07600 -18.24372 -17.77619 -17.49149 -16.99948 -16.87145 -16.65133 -15.85637 -15.68180 -15.37130 -14.98660 -14.82926 -14.77671 -14.46594 -14.25128 -14.02409 -13.86081 -13.36075 -13.00236 -12.93780 -12.52045 -12.45689 -12.41156 -12.29083 -12.01179 -11.90973 -11.82268 -11.56550 -11.39191 -10.54420 -10.31816 -10.00097 -9.69785 -8.45070 -6.07375 -0.00647 0.20064 0.86656 1.20055 1.24868 1.30296 1.32895 1.43542 1.78602 2.19968 2.52668 2.77095 3.04668 3.09249 3.23514 3.55003 3.69168 3.87953 3.93734 4.07471 4.10440 4.14287 4.34830 4.42825 4.56672 4.83081 5.13237 5.16967 5.25715 5.39294 5.48337 5.78324 5.86881 6.22285 6.44478 6.54416 6.79355 7.27749 7.80261 8.71711 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.003761 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.914488 B = 7442.461545 C = 8037.133186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.329 4.329 8 H 0.061 0.939 9 N -0.580 5.580 10 C 0.450 3.550 11 O -0.592 6.592 12 C 0.063 3.937 13 O -0.325 6.325 14 C 0.438 3.562 15 O -0.515 6.515 16 C 0.175 3.825 17 H 0.148 0.852 18 O -0.520 6.520 19 C -0.138 4.138 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.094 4.094 23 C -0.126 4.126 24 C -0.032 4.032 25 Cl -0.064 7.064 26 H 0.281 0.719 27 H 0.391 0.609 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.397 0.603 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.940 -10.248 -7.104 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.458 4.458 8 H 0.079 0.921 9 N -0.223 5.223 10 C 0.236 3.764 11 O -0.475 6.475 12 C -0.015 4.015 13 O -0.240 6.240 14 C 0.281 3.719 15 O -0.405 6.405 16 C 0.113 3.887 17 H 0.165 0.835 18 O -0.329 6.329 19 C -0.140 4.140 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.145 4.145 24 C -0.059 4.059 25 Cl -0.035 7.035 26 H 0.091 0.909 27 H 0.227 0.773 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.250 0.750 31 H 0.177 0.823 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.318 -10.885 -6.446 24.789 hybrid contribution -0.520 1.436 -0.044 1.528 sum 20.797 -9.449 -6.490 23.747 Atomic orbital electron populations 1.69781 1.08044 1.29435 1.49485 1.26043 0.96410 1.02513 0.95770 0.85443 0.79527 0.76993 0.80108 1.17943 1.19768 1.15674 1.18983 0.80706 0.95269 1.50799 0.92064 1.41816 1.06075 1.06958 1.67407 1.20086 0.89109 0.84193 0.82973 1.90609 1.70603 1.32144 1.54140 1.22656 0.91242 0.81576 1.05980 1.86658 1.23921 1.30708 1.82684 1.25024 0.80873 0.93976 0.72045 1.90655 1.60645 1.42900 1.46269 1.20139 0.82725 0.87304 0.98499 0.83521 1.86701 1.14414 1.77734 1.54001 1.19942 0.95140 1.02049 0.96847 1.21243 0.99454 0.98921 0.91726 1.21632 0.97261 0.96127 0.97931 1.21627 0.93213 0.97753 0.98638 1.21369 1.01583 0.99888 0.91620 1.21072 0.91629 1.01584 0.91628 1.98448 1.61711 1.97183 1.46134 0.90916 0.77314 0.86880 0.86809 0.75033 0.82315 0.81548 0.81941 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.96 21.66 0.30 -54.72 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 3 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 7 C -0.33 -19.00 10.16 84.04 0.85 -18.14 16 8 H 0.06 4.20 7.39 -2.92 -0.02 4.18 16 9 N -0.58 -27.26 5.09 -306.99 -1.56 -28.83 16 10 C 0.45 20.65 7.86 87.66 0.69 21.34 16 11 O -0.59 -32.77 16.08 15.71 0.25 -32.52 16 12 C 0.06 2.13 5.94 71.23 0.42 2.55 16 13 O -0.33 -11.21 8.49 -45.05 -0.38 -11.60 16 14 C 0.44 12.65 7.26 71.23 0.52 13.17 16 15 O -0.52 -15.63 16.07 28.35 0.46 -15.17 16 16 C 0.17 4.07 3.25 29.10 0.09 4.16 16 17 H 0.15 3.48 7.13 -2.39 -0.02 3.46 16 18 O -0.52 -10.14 12.64 -129.95 -1.64 -11.78 16 19 C -0.14 -3.03 5.04 -19.84 -0.10 -3.13 16 20 C -0.10 -1.47 9.30 22.26 0.21 -1.26 16 21 C -0.11 -1.39 10.05 22.27 0.22 -1.17 16 22 C -0.09 -1.37 10.05 22.27 0.22 -1.15 16 23 C -0.13 -2.62 9.83 22.29 0.22 -2.40 16 24 C -0.03 -0.81 6.31 22.32 0.14 -0.67 16 25 Cl -0.06 -1.96 26.16 -2.72 -0.07 -2.03 16 26 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.39 15.21 5.76 -92.71 -0.53 14.68 16 28 H 0.11 3.30 8.13 -2.38 -0.02 3.28 16 29 H 0.11 3.27 8.13 -2.39 -0.02 3.25 16 30 H 0.40 5.09 7.07 -74.06 -0.52 4.57 16 31 H 0.16 1.45 6.40 -2.91 -0.02 1.43 16 32 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -78.48 320.02 3.28 -75.20 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.07 Total: 28.01 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 3.96 Total: 13.35 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.26 Total: -83.54 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -1.32 Total: -71.07 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.03 kcal Total: -78.48 3.28 -75.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768598815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.185 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds